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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959120
Clone id TST39A01NGRL0003_N06
Library
Length 673
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_N06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTCTGGGAAGAAAGAGGGGTCTGATGGAGGGCGTGCTCGTCTAGAGAGAGACCCTCAGA
CACACACAGACAGAGAGAGAGAGAGAGAGAGAGAGGAAGAGATGGCGATGGAGGGCTGAC
TCACATTTTCACAAGCTAGGCGTTGTTTTCCTTTTGATCAATCCTGTATATGTGCTTTAA
TAAAGGGCAATACTTGTATGTGTAGGTAATGTTAAGAGTCTTGGATCATTGCACAGAGAG
AGAGGAGAGAGAGAGAGAGAGAGGCTCTGGGCTCTAGTCTCTGCACATTTCACTTGAACG
AGGAAGCATTTTTATCTCGCTTTCTTGATTAATCCTTCAGCCTCCATTTTTGACCTTAGC
AAGGCTTTCTTGCAGCAGAAGCTCCTATCGGCAGGCGACTCTGCTTGAAAAGAGCTATTA
TCAAGCTAGAGGCACAGCATAAACAGGCAGGGCCCAGTTCGTGCGTGCTCGTTGAGTGGC
AGGGACAGTGTTTGAAGACCATGCCTTGGTTTCAAAGGGCGCCCACAGACCAAAGTCAGG
TTGCTGTTGCTGCCACTGCAGCTTACTCTCAACCCGCCCAACAGCAAAGCTCGGACTCTG
GAGACACTTCCNAGGCCCCATCCATTGCTGCGATTGCAAAATCTCTCCTTGTAACCAGGC
GCCGACTGCGGCT
■■Homology search results ■■ -
sp_hit_id Q91736
Definition sp|Q91736|EPB1B_XENLA Ephrin type-B receptor 1-B (Fragment) OS=Xenopus laevis
Align length 26
Score (bit) 30.8
E-value 6.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959120|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_N06, 5'
         (673 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91736|EPB1B_XENLA Ephrin type-B receptor 1-B (Fragment) OS=X...    31   6.8  
sp|Q91571|EPB1A_XENLA Ephrin type-B receptor 1-A OS=Xenopus laev...    31   6.8  

>sp|Q91736|EPB1B_XENLA Ephrin type-B receptor 1-B (Fragment)
           OS=Xenopus laevis GN=ephb1-B PE=2 SV=1
          Length = 902

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 511 NQGM-VFKHCPCHSTSTHELGPACLC 437
           NQGM +   CP +S ST E  P C+C
Sbjct: 196 NQGMGICAQCPANSRSTSEASPICIC 221


>sp|Q91571|EPB1A_XENLA Ephrin type-B receptor 1-A OS=Xenopus laevis
           GN=ephb1-A PE=2 SV=1
          Length = 985

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 511 NQGM-VFKHCPCHSTSTHELGPACLC 437
           NQGM +   CP +S ST E  P C+C
Sbjct: 280 NQGMGICAQCPANSRSTSEASPICIC 305
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959120|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_N06, 5'
         (673 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******