DK959151 |
Clone id |
TST39A01NGRL0003_O14 |
Library |
TST39 |
Length |
662 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_O14. 5' end sequence. |
Accession |
DK959151 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL51Contig1 |
Sequence |
GCACCTACTGCCTTCGCAAGTAGGTTTAGGGTTTCTGCAGTAGAGCAGCTATGGTGTCCG CCTGCTTCTCTTCAGTTAATGGTTCGCTTGCAGCAGCAGCTGCCTCCACCACTAGGCCAG AGGGGCGTTTAACCCTGTTGCAGGCTCCCCGCTCCTTGCGGACCTTGCGACCGTTCGAGC TTCGCATGCTCTCGCTGTCTGTCCCTCGCAAAGGTCTACACAGACATGGATATGGTGTGG TTGGGCAAGCTCATGCAGAGCTTTCTGTGGAAGAAGTTCAAGCCCTCGATGCCTCCTCAG ACGAAGATGAGCGCGAAGAAGGTGACTCTCTTGATAACGGACCTTCTTTTCGGGACAACG GCCCGCCCTTTGGTGAGTCTGTGGCCAAGCTGTATGTTGGGAACCTGCCATGGAGCTGCA ACAGCGAAGAACTTGCTGGCGTTTTTCAGAAAGTGGGCAGCGTAGACATGGTTGAGGTTA TTTATGACAAAGAGTCTGGCAGGAGTCGTGGTTTTGGGTTTGTCACTATGAGCTCTGTAG AGGACTGTAATACTGCCATTGAGAAGCTAGACGGGGCTGATTATGCTGGAAGGACATTGC GAGTGAATTTTCCCAACCGTAACAGAGGAGATGCTCCTACCCCTCGTGCTCCAAGAATGG AC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ZUU4 |
Definition |
sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana |
Align length |
108 |
Score (bit) |
95.9 |
E-value |
2.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959151|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_O14, 5' (662 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chlor... 96 2e-19 sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic O... 94 5e-19 sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=... 94 6e-19 sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=... 94 8e-19 sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=... 91 7e-18 sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic O... 91 7e-18 sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=S... 90 1e-17 sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=... 90 1e-17 sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=... 88 5e-17 sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=... 87 8e-17 sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=... 87 1e-16 sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=... 85 3e-16 sp|Q44554|RBPB_ANASP Putative RNA-binding protein rbpB OS=Anabae... 75 4e-13 sp|Q9WX37|RBPE_ANASP Putative RNA-binding protein rbpE OS=Anabae... 73 1e-12 sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein rbpA OS=Synech... 72 3e-12 sp|Q9WX39|RBPF_ANASP Putative RNA-binding protein rbpF OS=Anabae... 71 4e-12 sp|Q44560|RBPA_ANASP Putative RNA-binding protein rbpA OS=Anabae... 71 4e-12 sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor 64 kDa subunit... 70 8e-12 sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor 64 kDa subunit... 70 8e-12 sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sa... 69 3e-11 sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=... 68 4e-11 sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=... 68 4e-11 sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=... 68 4e-11 sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorgh... 68 4e-11 sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor 64 kDa subunit... 68 4e-11 sp|P33240|CSTF2_HUMAN Cleavage stimulation factor 64 kDa subunit... 68 4e-11 sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor 64 kDa subunit... 68 4e-11 sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pong... 68 4e-11 sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo... 68 4e-11 sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabi... 68 5e-11
>sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1 Length = 289
Score = 95.9 bits (237), Expect = 2e-19 Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 7/108 (6%) Frame = +3
Query: 348 FRDNGPPFGESVA---KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFG 518 F D PP +S + KL+VGNLP++ +S +LA +F+ G+V+MVEVIYDK +GRSRGFG Sbjct: 76 FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFG 135
Query: 519 FVTMSSVEDCNTAIEKLDGADYAGRTLRVNF----PNRNRGDAPTPRA 650 FVTMSSV + A ++ +G + GR LRVN P R G + PR+ Sbjct: 136 FVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRS 183
Score = 78.2 bits (191), Expect = 4e-14 Identities = 39/91 (42%), Positives = 54/91 (59%) Frame = +3
Query: 336 NGPSFRDNGPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGF 515 +G + G S ++YVGNL W + L +F + G V VIYD++SGRS+GF Sbjct: 188 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247
Query: 516 GFVTMSSVEDCNTAIEKLDGADYAGRTLRVN 608 GFVT S ++ AI+ LDGAD GR +RV+ Sbjct: 248 GFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 Length = 291
Score = 94.4 bits (233), Expect = 5e-19 Identities = 50/95 (52%), Positives = 67/95 (70%) Frame = +3
Query: 363 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 542 P F E + KL+VGNLP+S +S LAG+F++ G+V+MVEVIYDK +GRSRGFGFVTMS+ E Sbjct: 81 PRFSEDL-KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKE 139
Query: 543 DCNTAIEKLDGADYAGRTLRVNFPNRNRGDAPTPR 647 + A ++ +G + GR +RV N G AP R Sbjct: 140 EVEAAEQQFNGYEIDGRAIRV-----NAGPAPAKR 169
Score = 79.3 bits (194), Expect = 2e-14 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 8/94 (8%) Frame = +3
Query: 351 RDNGPPFG--------ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRS 506 RD FG +S ++YVGNL W + L +F + G+V +V+YD++SGRS Sbjct: 188 RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRS 247
Query: 507 RGFGFVTMSSVEDCNTAIEKLDGADYAGRTLRVN 608 RGFGFVT SS ++ N AI+ L+G D GR++RV+ Sbjct: 248 RGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVS 281
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 Length = 292
Score = 94.0 bits (232), Expect = 6e-19 Identities = 50/95 (52%), Positives = 67/95 (70%) Frame = +3
Query: 363 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 542 P F E + KL+VGNLP+S +S LAG+F++ G+V++VEVIYDK SGRSRGFGFVTMS+ E Sbjct: 82 PRFSEDL-KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKE 140
Query: 543 DCNTAIEKLDGADYAGRTLRVNFPNRNRGDAPTPR 647 + A ++ +G + GR +RV N G AP R Sbjct: 141 EVEAAEQQFNGYEIDGRAIRV-----NAGPAPAKR 170
Score = 79.7 bits (195), Expect = 1e-14 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 8/94 (8%) Frame = +3
Query: 351 RDNGPPFG--------ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRS 506 RD FG +S ++YVGNL W + L +F + G+V +V+YD++SGRS Sbjct: 189 RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRS 248
Query: 507 RGFGFVTMSSVEDCNTAIEKLDGADYAGRTLRVN 608 RGFGFVT SS ++ N AI+ L+G D GR++RV+ Sbjct: 249 RGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVS 282
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 233
Score = 93.6 bits (231), Expect = 8e-19 Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Frame = +3
Query: 354 DNGPPFGE--SVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVT 527 + G F E AKL+VGNLP+ +SE+LAG+F G V++ EVIY++E+ RSRGFGFVT Sbjct: 43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 102
Query: 528 MSSVEDCNTAIEKLDGADYAGRTLRVNFPNRNRGDAPTPRAPRMD 662 MS+VE+ A+E L+G D GR L V N+ RAPR D Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQLTV---NKAAPRGSPERAPRGD 144
Score = 80.1 bits (196), Expect = 1e-14 Identities = 39/78 (50%), Positives = 50/78 (64%) Frame = +3
Query: 375 ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNT 554 E ++YVGNLPW ++ L +F + G V V+ D+E+GRSRGFGFVTMSS + N Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205
Query: 555 AIEKLDGADYAGRTLRVN 608 AI LDG GR +RVN Sbjct: 206 AIAALDGQTLDGRAVRVN 223
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 Length = 324
Score = 90.5 bits (223), Expect = 7e-18 Identities = 42/81 (51%), Positives = 57/81 (70%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 +LYVGNLP+S S +L+ +F + G+V VE++YD+ + RSRGF FVTM SVE+ AI Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 567 LDGADYAGRTLRVNFPNRNRG 629 DG+ GRT++VNFP RG Sbjct: 175 FDGSQVGGRTVKVNFPEVPRG 195
Score = 72.8 bits (177), Expect = 2e-12 Identities = 36/80 (45%), Positives = 49/80 (61%) Frame = +3
Query: 369 FGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDC 548 F +S KLYV NL W+ S+ L F +VIYD+ SGRSRGFGF+T SS E Sbjct: 212 FVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAM 271
Query: 549 NTAIEKLDGADYAGRTLRVN 608 N+A++ ++ + GR LR+N Sbjct: 272 NSALDTMNEVELEGRPLRLN 291
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 Length = 273
Score = 90.5 bits (223), Expect = 7e-18 Identities = 43/74 (58%), Positives = 58/74 (78%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 K++VGNLP+S +S LA +F++ G+V+MVEVIYDK +GRSRGFGFVTMSS E+ A ++ Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 567 LDGADYAGRTLRVN 608 +G + GR LRVN Sbjct: 148 FNGYELDGRALRVN 161
Score = 85.5 bits (210), Expect = 2e-16 Identities = 40/78 (51%), Positives = 54/78 (69%) Frame = +3
Query: 375 ESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNT 554 +S ++YVGNL W + + L +F + G V +V+YD++SGRSRGFGFVT SS E+ N Sbjct: 185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 244
Query: 555 AIEKLDGADYAGRTLRVN 608 AIE LDG D GR +RV+ Sbjct: 245 AIESLDGVDLNGRAIRVS 262
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1 Length = 260
Score = 89.7 bits (221), Expect = 1e-17 Identities = 40/83 (48%), Positives = 59/83 (71%) Frame = +3
Query: 372 GESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCN 551 GE +LYVGN+P + N++EL + ++ G++++ EV+YDK SGRSR FGFVTM +VED N Sbjct: 80 GEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDAN 139
Query: 552 TAIEKLDGADYAGRTLRVNFPNR 620 IEKL+ + GR ++VN + Sbjct: 140 AVIEKLNDTEIGGRKIKVNITEK 162
Score = 52.8 bits (125), Expect = 2e-06 Identities = 30/80 (37%), Positives = 45/80 (56%) Frame = +3
Query: 369 FGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDC 548 F ES K+Y+GNL + +E L F + G V +V + +S GFGFV+ SS E+ Sbjct: 179 FVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEV 238
Query: 549 NTAIEKLDGADYAGRTLRVN 608 AI+ L+ + G+ +RVN Sbjct: 239 EAAIQALNNSVLEGQKIRVN 258
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1 Length = 329
Score = 89.7 bits (221), Expect = 1e-17 Identities = 48/92 (52%), Positives = 66/92 (71%) Frame = +3
Query: 384 AKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIE 563 AKL+VGNL + NS+ LA +F++ G+V++ EVIY++E+ +SRGFGFVTMSSV++ TA+E Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 564 KLDGADYAGRTLRVNFPNRNRGDAPTPRAPRM 659 K + D GR L VN RG P RAPR+ Sbjct: 210 KFNRYDLNGRLLTVN-KAAPRGSRP-ERAPRV 239
Score = 87.0 bits (214), Expect = 8e-17 Identities = 41/85 (48%), Positives = 55/85 (64%) Frame = +3
Query: 354 DNGPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMS 533 + P E ++YVGNLPW ++ L +F + G V V+YD+E+GRSRGFGFVTMS Sbjct: 234 ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMS 293
Query: 534 SVEDCNTAIEKLDGADYAGRTLRVN 608 V++ N AI LDG + GR +RVN Sbjct: 294 DVDELNEAISALDGQNLEGRAIRVN 318
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 Length = 276
Score = 87.8 bits (216), Expect = 5e-17 Identities = 49/91 (53%), Positives = 63/91 (69%) Frame = +3
Query: 384 AKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIE 563 AKL+VGNLP+ +SE LA +FQ+ G V++ EVIY++E+ RSRGFGFVTMS+VE+ + A+E Sbjct: 97 AKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVE 156
Query: 564 KLDGADYAGRTLRVNFPNRNRGDAPTPRAPR 656 D GR L VN RG P RAPR Sbjct: 157 LYSQYDLNGRLLTVN-KAAPRGSRP-ERAPR 185
Score = 83.6 bits (205), Expect = 9e-16 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 4/94 (4%) Frame = +3
Query: 354 DNGPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMS 533 + P + ++YVGN+PW + L VF + G V V++D+ESGRSRGFGFVTMS Sbjct: 181 ERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMS 240
Query: 534 SVEDCNTAIEKLDGADYAGRTLRVNF----PNRN 623 S + + AI LDG GRT+RVN P RN Sbjct: 241 SEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRN 274
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2 Length = 342
Score = 87.0 bits (214), Expect = 8e-17 Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 4/92 (4%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 KL+VGNL ++ +S +LA +F+ G+V+MVEVIYDK +GRSRGFGFVTMS+ + A ++ Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 567 LDGADYAGRTLRVNF----PNRNRGDAPTPRA 650 +G ++ GR LRVN P R + PR+ Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPRS 191
Score = 78.2 bits (191), Expect = 4e-14 Identities = 37/74 (50%), Positives = 50/74 (67%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 +LYVGNL W + L +F + G V VIYD++SGRS+GFGFVT+SS ++ AI Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 567 LDGADYAGRTLRVN 608 L+GAD GR +RV+ Sbjct: 318 LNGADLDGRQIRVS 331
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5BDH4 |
Definition |
tr|A5BDH4|A5BDH4_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
89 |
Score (bit) |
119.0 |
E-value |
1.0e-25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959151|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_O14, 5' (662 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5BDH4|A5BDH4_VITVI Putative uncharacterized protein OS=Vitis... 119 1e-25 tr|A7NXI6|A7NXI6_VITVI Chromosome chr5 scaffold_2, whole genome ... 118 3e-25 tr|A9SLJ0|A9SLJ0_PHYPA Predicted protein (Fragment) OS=Physcomit... 112 3e-23 tr|Q41124|Q41124_PHAVU Chloroplast RNA binding protein OS=Phaseo... 111 3e-23 tr|A9PFU9|A9PFU9_POPTR Putative uncharacterized protein OS=Popul... 109 2e-22 tr|B6U471|B6U471_MAIZE Ribonucleoprotein A OS=Zea mays PE=2 SV=1 108 2e-22 tr|B4FLX0|B4FLX0_MAIZE Putative uncharacterized protein OS=Zea m... 108 4e-22 tr|B7FKI6|B7FKI6_MEDTR Putative uncharacterized protein OS=Medic... 107 5e-22 tr|Q6K6C4|Q6K6C4_ORYSJ Os02g0815200 protein OS=Oryza sativa subs... 106 1e-21 tr|A2XAZ0|A2XAZ0_ORYSI Putative uncharacterized protein OS=Oryza... 106 1e-21 tr|B6T531|B6T531_MAIZE Ribonucleoprotein A OS=Zea mays PE=2 SV=1 105 2e-21 tr|A9TLQ5|A9TLQ5_PHYPA Predicted protein (Fragment) OS=Physcomit... 103 7e-21 tr|A9SSU3|A9SSU3_PHYPA Predicted protein OS=Physcomitrella paten... 102 2e-20 tr|A6N1F5|A6N1F5_ORYSI Chloroplast 29 kDa ribonucleoprotein (Fra... 102 2e-20 tr|Q8LHN4|Q8LHN4_ORYSJ Os07g0631900 protein OS=Oryza sativa subs... 102 2e-20 tr|A9TLQ3|A9TLQ3_PHYPA Predicted protein OS=Physcomitrella paten... 102 2e-20 tr|A2YNZ1|A2YNZ1_ORYSI Putative uncharacterized protein OS=Oryza... 102 2e-20 tr|O04240|O04240_VICFA RNA- or ssDNA-binding protein (Fragment) ... 101 4e-20 tr|A9P1T0|A9P1T0_PICSI Putative uncharacterized protein OS=Picea... 100 8e-20 tr|A9NNN9|A9NNN9_PICSI Putative uncharacterized protein OS=Picea... 100 8e-20 tr|Q8S7G2|Q8S7G2_ORYSA Putative ribonucleoprotein OS=Oryza sativ... 100 1e-19 tr|Q10KP0|Q10KP0_ORYSJ Os03g0376600 protein OS=Oryza sativa subs... 100 1e-19 tr|A2XHA8|A2XHA8_ORYSI Putative uncharacterized protein OS=Oryza... 100 1e-19 tr|A9NTU4|A9NTU4_PICSI Putative uncharacterized protein OS=Picea... 98 5e-19 tr|B6SS58|B6SS58_MAIZE Ribonucleoprotein OS=Zea mays PE=2 SV=1 97 7e-19 tr|B4FMY7|B4FMY7_MAIZE Putative uncharacterized protein OS=Zea m... 97 7e-19 tr|A7PT43|A7PT43_VITVI Chromosome chr8 scaffold_29, whole genome... 96 2e-18 tr|Q8L941|Q8L941_ARATH Putative RNA-binding protein OS=Arabidops... 96 2e-18 tr|Q7GA50|Q7GA50_ARATH Putative RNA-binding protein OS=Arabidops... 96 2e-18 tr|O81989|O81989_HORVU Cp33Hv OS=Hordeum vulgare PE=2 SV=1 94 6e-18
>tr|A5BDH4|A5BDH4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026573 PE=4 SV=1 Length = 355
Score = 119 bits (299), Expect = 1e-25 Identities = 56/89 (62%), Positives = 68/89 (76%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 KLY GNLP+SC+S LAG+ Q GS ++VEV+YD+++GRSRGF FVTMSSVEDCN IE Sbjct: 67 KLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVEDCNAVIEN 126
Query: 567 LDGADYAGRTLRVNFPNRNRGDAPTPRAP 653 LDG++Y GRTLRVNF D P P+ P Sbjct: 127 LDGSEYGGRTLRVNF-----SDKPKPKLP 150
Score = 47.0 bits (110), Expect = 0.001 Identities = 23/46 (50%), Positives = 30/46 (65%) Frame = +3
Query: 363 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESG 500 P + E+ KL+VGNL WS SE L VFQ+ G+V V+YD E+G Sbjct: 150 PLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETG 195
>tr|A7NXI6|A7NXI6_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020349001 PE=4 SV=1 Length = 283
Score = 118 bits (296), Expect = 3e-25 Identities = 55/89 (61%), Positives = 69/89 (77%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 KLY GNLP+SC+S +LAG+ Q GS ++VEV+Y++++GRSRGF FVTMSSVEDCN IE Sbjct: 112 KLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIEN 171
Query: 567 LDGADYAGRTLRVNFPNRNRGDAPTPRAP 653 LDG++Y GRTLRVNF D P P+ P Sbjct: 172 LDGSEYGGRTLRVNF-----SDKPKPKLP 195
Score = 82.4 bits (202), Expect = 2e-14 Identities = 40/88 (45%), Positives = 57/88 (64%) Frame = +3
Query: 363 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 542 P + E+ KL+VGNL WS SE L VFQ+ G+V V+YD E+GRSRG+GFV S+ Sbjct: 195 PLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKA 254
Query: 543 DCNTAIEKLDGADYAGRTLRVNFPNRNR 626 + +TA+E L+G + GR +R++ R Sbjct: 255 EMDTALESLNGVELEGRAIRISLAQGRR 282
>tr|A9SLJ0|A9SLJ0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_47163 PE=4 SV=1 Length = 192
Score = 112 bits (279), Expect = 3e-23 Identities = 51/87 (58%), Positives = 65/87 (74%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 KLY+GNLPW C+S +LAG+ Q+ GSV++VEVIYD+ESGRSRGF FVTM++ ED IE+ Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 567 LDGADYAGRTLRVNFPNRNRGDAPTPR 647 LDG D GR L+V+FP + PR Sbjct: 61 LDGHDVGGRPLKVSFPQSKQNRPSFPR 87
Score = 82.4 bits (202), Expect = 2e-14 Identities = 39/74 (52%), Positives = 51/74 (68%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 K++VGNL W ++ L +F G V V+YD+ESGRSRGFGFVT S V + + AI+ Sbjct: 108 KVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDS 167
Query: 567 LDGADYAGRTLRVN 608 LDGA++ GR LRVN Sbjct: 168 LDGAEFDGRELRVN 181
>tr|Q41124|Q41124_PHAVU Chloroplast RNA binding protein OS=Phaseolus vulgaris GN=RNP1 PE=2 SV=1 Length = 287
Score = 111 bits (278), Expect = 3e-23 Identities = 49/84 (58%), Positives = 65/84 (77%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 KLY GNLP+S +S +LAG+ Q GS +++EV+YD+++G+SRGF FVTMS +EDCN IE Sbjct: 114 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 173
Query: 567 LDGADYAGRTLRVNFPNRNRGDAP 638 LDG +Y GRTLRVNF N+ + P Sbjct: 174 LDGKEYLGRTLRVNFSNKPKAKEP 197
Score = 74.3 bits (181), Expect = 6e-12 Identities = 37/88 (42%), Positives = 53/88 (60%) Frame = +3
Query: 363 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 542 P + E+ KL+VGNL WS +E L FQ+ G+V V+YD E+GRSRG+GFV S+ E Sbjct: 197 PLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKE 256
Query: 543 DCNTAIEKLDGADYAGRTLRVNFPNRNR 626 + A+ L+ + GR +RV+ R Sbjct: 257 EMEAALGALNDVELEGRAMRVSLAEGKR 284
>tr|A9PFU9|A9PFU9_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 279
Score = 109 bits (272), Expect = 2e-22 Identities = 52/89 (58%), Positives = 66/89 (74%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 KLY GNLP++ +S +LAG+ Q+ G+ +MVEV+Y +E+GRSRGF FVTMSS+EDC T IE Sbjct: 108 KLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFVTMSSIEDCETVIEN 167
Query: 567 LDGADYAGRTLRVNFPNRNRGDAPTPRAP 653 LDG+ Y GR LRVNF D P P+ P Sbjct: 168 LDGSQYMGRILRVNF-----ADKPKPKEP 191
Score = 81.3 bits (199), Expect = 5e-14 Identities = 38/82 (46%), Positives = 55/82 (67%) Frame = +3
Query: 363 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 542 P + E+ KL++GNL WS SE L FQ+ G+V V+YD E+G+SRG+GFV S+ E Sbjct: 191 PLYPETEYKLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKE 250
Query: 543 DCNTAIEKLDGADYAGRTLRVN 608 + TA++ L+G + GR LRV+ Sbjct: 251 ELETALQSLNGVELEGRALRVS 272
>tr|B6U471|B6U471_MAIZE Ribonucleoprotein A OS=Zea mays PE=2 SV=1 Length = 268
Score = 108 bits (271), Expect = 2e-22 Identities = 55/101 (54%), Positives = 72/101 (71%) Frame = +3
Query: 354 DNGPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMS 533 D F E + KL+VGNLP+S +S +LAG+F++ GSV+MVEV+YD+ +GRSRGFGFVTMS Sbjct: 70 DGSEEFSEDL-KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMS 128
Query: 534 SVEDCNTAIEKLDGADYAGRTLRVNFPNRNRGDAPTPRAPR 656 S E+ A+E+ +G + GR LRVN D TPRAPR Sbjct: 129 SAEEAEAAVEQFNGYAFQGRQLRVNCGPPPPRDESTPRAPR 169
Score = 84.0 bits (206), Expect = 8e-15 Identities = 41/82 (50%), Positives = 53/82 (64%) Frame = +3
Query: 360 GPPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSV 539 G F +S K+YVGNL W ++ L +F + G V +VIYD++SGRSRGFGFVT S Sbjct: 176 GGGFVDSANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSA 235
Query: 540 EDCNTAIEKLDGADYAGRTLRV 605 ++ N AI LDG D GR +RV Sbjct: 236 QEVNNAISNLDGIDLDGRQIRV 257
>tr|B4FLX0|B4FLX0_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 287
Score = 108 bits (269), Expect = 4e-22 Identities = 51/96 (53%), Positives = 70/96 (72%), Gaps = 2/96 (2%) Frame = +3
Query: 339 GPSFRDNGPPFGESVA--KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRG 512 G S D+GP S KLY GNLP++C+S +LAG+ Q+ S +MVEV+YD+ +GRSRG Sbjct: 99 GASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRG 158
Query: 513 FGFVTMSSVEDCNTAIEKLDGADYAGRTLRVNFPNR 620 F FVTM++V+DC I+ LDG+ Y GRT++VNF +R Sbjct: 159 FAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFADR 194
Score = 74.7 bits (182), Expect = 5e-12 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 4/92 (4%) Frame = +3
Query: 345 SFRDNGPP----FGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRG 512 +F D P + E+ KL+VGNL W+ SE L F + G+V V+YD E+GRSRG Sbjct: 190 NFADRPKPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRG 249
Query: 513 FGFVTMSSVEDCNTAIEKLDGADYAGRTLRVN 608 +GFV S+ E+ + A+ L+G + GR +RVN Sbjct: 250 YGFVCYSTREEMDEALSSLNGMEMEGREMRVN 281
>tr|B7FKI6|B7FKI6_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 285
Score = 107 bits (268), Expect = 5e-22 Identities = 53/100 (53%), Positives = 71/100 (71%), Gaps = 6/100 (6%) Frame = +3
Query: 372 GESVA------KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMS 533 GE+VA KLY GNLP+S +S LAG+ ++ GS +++EV+YD+++G+SRGF FVTMS Sbjct: 103 GETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMS 162
Query: 534 SVEDCNTAIEKLDGADYAGRTLRVNFPNRNRGDAPTPRAP 653 VEDCN I+ LDG ++ GRTLRVNF D P P+ P Sbjct: 163 CVEDCNAVIQNLDGKEFMGRTLRVNF-----SDKPKPKEP 197
Score = 75.5 bits (184), Expect = 3e-12 Identities = 36/88 (40%), Positives = 56/88 (63%) Frame = +3
Query: 363 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 542 P + E+ KL+VGNL W+ SE L FQ+ G+V V++D E+G+SRG+GFV+ ++ Sbjct: 197 PLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKS 256
Query: 543 DCNTAIEKLDGADYAGRTLRVNFPNRNR 626 + +TA+ +D + GRTLRV+ R Sbjct: 257 EMDTALAIMDNVELEGRTLRVSLAQGKR 284
>tr|Q6K6C4|Q6K6C4_ORYSJ Os02g0815200 protein OS=Oryza sativa subsp. japonica GN=P0643F09.1 PE=2 SV=1 Length = 316
Score = 106 bits (265), Expect = 1e-21 Identities = 49/89 (55%), Positives = 66/89 (74%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 KLY GNLP++C+S +LAG+ Q + +MVEV+YD+ +GRSRGF FVTMS++EDC I+ Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 205
Query: 567 LDGADYAGRTLRVNFPNRNRGDAPTPRAP 653 LDG+ Y+GRT+RVNF D P P+ P Sbjct: 206 LDGSLYSGRTMRVNF-----ADKPKPKLP 229
Score = 80.9 bits (198), Expect = 7e-14 Identities = 39/82 (47%), Positives = 55/82 (67%) Frame = +3
Query: 363 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 542 P + E+ KL+VGNL W+ SE L +FQK G+V V+YD E+GRSRG+GFV S+ E Sbjct: 229 PLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKE 288
Query: 543 DCNTAIEKLDGADYAGRTLRVN 608 + + A+ L+G + GR +RVN Sbjct: 289 EMDEALSSLNGTELEGREIRVN 310
>tr|A2XAZ0|A2XAZ0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_09422 PE=4 SV=1 Length = 318
Score = 106 bits (265), Expect = 1e-21 Identities = 49/89 (55%), Positives = 66/89 (74%) Frame = +3
Query: 387 KLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVEDCNTAIEK 566 KLY GNLP++C+S +LAG+ Q + +MVEV+YD+ +GRSRGF FVTMS++EDC I+ Sbjct: 148 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 207
Query: 567 LDGADYAGRTLRVNFPNRNRGDAPTPRAP 653 LDG+ Y+GRT+RVNF D P P+ P Sbjct: 208 LDGSLYSGRTMRVNF-----ADKPKPKLP 231
Score = 80.9 bits (198), Expect = 7e-14 Identities = 39/82 (47%), Positives = 55/82 (67%) Frame = +3
Query: 363 PPFGESVAKLYVGNLPWSCNSEELAGVFQKVGSVDMVEVIYDKESGRSRGFGFVTMSSVE 542 P + E+ KL+VGNL W+ SE L +FQK G+V V+YD E+GRSRG+GFV S+ E Sbjct: 231 PLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKE 290
Query: 543 DCNTAIEKLDGADYAGRTLRVN 608 + + A+ L+G + GR +RVN Sbjct: 291 EMDEALSSLNGTELEGREIRVN 312
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