DK959154 |
Clone id |
TST39A01NGRL0003_O17 |
Library |
TST39 |
Length |
323 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_O17. 5' end sequence. |
Accession |
DK959154 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
ATTGGGTGTATGTGTCCGTGTGTGAGTATGAGCCAGATGCAGAGAAAAAAAAAGAAAATC ACCAGAGATGACCAAACATGATACGCTTCTTCTCTCTGGAGCTGGAGGCAGAGGAACTTG GGGAGAACGTGAGGGCTCTCTTGGAAGCGGAAACCGGCTTCTCCCTGGCCTTGCTGCGCC TGGTCTACAACAGCCGCTATCTGCCCAACTCCTCCACTCTACGATCTGCTGGTGATTGTA TAAGGTGACCTTCTCATATTGGATACGGTTGCGCCGTCCCCCGCCCCTGCCCCCACTCCT CCCGGTGACTCTTTGTCTCTTGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6ZRV2 |
Definition |
sp|Q6ZRV2|FA83H_HUMAN Protein FAM83H OS=Homo sapiens |
Align length |
42 |
Score (bit) |
35.8 |
E-value |
0.067 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959154|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_O17, 5' (323 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6ZRV2|FA83H_HUMAN Protein FAM83H OS=Homo sapiens GN=FAM83H P... 36 0.067 sp|Q7T6X1|YR610_MIMIV Uncharacterized protein R610 OS=Acanthamoe... 33 0.33 sp|Q9CWP9|U572_MOUSE UPF0572 protein OS=Mus musculus PE=2 SV=1 33 0.57 sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1 33 0.57 sp|Q80ZC9|PS1C2_MOUSE Psoriasis susceptibility 1 candidate gene ... 32 0.74 sp|Q6DRA6|H2B2D_HUMAN Putative histone H2B type 2-D OS=Homo sapi... 32 1.3 sp|Q6DN03|H2B2C_HUMAN Putative histone H2B type 2-C OS=Homo sapi... 32 1.3 sp|Q5DU25|IQEC2_MOUSE IQ motif and SEC7 domain-containing protei... 31 1.7 sp|Q5JU85|IQEC2_HUMAN IQ motif and SEC7 domain-containing protei... 31 1.7 sp|P24328|PERT_BORPA Pertactin OS=Bordetella parapertussis GN=pr... 31 2.2 sp|Q497D6|DDI2_XENTR Protein DDI1 homolog 2 OS=Xenopus tropicali... 31 2.2 sp|Q32P12|CQ053_MOUSE Uncharacterized protein C17orf53 homolog O... 31 2.2 sp|Q2K3Y7|ARAG_RHIEC Arabinose import ATP-binding protein araG O... 28 2.5 sp|A2VDR9|ZN750_BOVIN Protein ZNF750 OS=Bos taurus GN=ZNF750 PE=... 30 2.8 sp|Q8BKZ9|ODPX_MOUSE Pyruvate dehydrogenase protein X component,... 30 2.8 sp|Q96PZ2|F111A_HUMAN Protein FAM111A OS=Homo sapiens GN=FAM111A... 30 2.8 sp|Q69ZW3|EHBP1_MOUSE EH domain-binding protein 1 OS=Mus musculu... 30 3.7 sp|A2ADY9|DDI2_MOUSE Protein DDI1 homolog 2 OS=Mus musculus GN=D... 30 3.7 sp|Q5TDH0|DDI2_HUMAN Protein DDI1 homolog 2 OS=Homo sapiens GN=D... 30 3.7 sp|Q5T230|UTF1_HUMAN Undifferentiated embryonic cell transcripti... 30 4.8 sp|O95072|REC8_HUMAN Meiotic recombination protein REC8 homolog ... 30 4.8 sp|Q7ZYA7|DDI2_XENLA Protein DDI1 homolog 2 OS=Xenopus laevis GN... 30 4.8 sp|P27658|CO8A1_HUMAN Collagen alpha-1(VIII) chain OS=Homo sapie... 30 4.8 sp|P40603|APG_BRANA Anther-specific proline-rich protein APG (Fr... 30 4.8 sp|P55196|AFAD_HUMAN Afadin OS=Homo sapiens GN=MLLT4 PE=1 SV=2 30 4.8 sp|Q9C0B9|ZCHC2_HUMAN Zinc finger CCHC domain-containing protein... 29 6.3 sp|Q6ZRN7|YP029_HUMAN Putative uncharacterized protein FLJ46214 ... 29 6.3 sp|Q9BEA8|TNFL6_PIG Tumor necrosis factor ligand superfamily mem... 29 6.3 sp|P03186|TEGU_EBV Large tegument protein OS=Epstein-Barr virus ... 29 6.3 sp|Q5T5P2|SKT_HUMAN Sickle tail protein homolog OS=Homo sapiens ... 29 6.3
>sp|Q6ZRV2|FA83H_HUMAN Protein FAM83H OS=Homo sapiens GN=FAM83H PE=1 SV=2 Length = 1179
Score = 35.8 bits (81), Expect = 0.067 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = -3
Query: 183 PGAARPGRSRFPLPREPSRSPQVPLPPAPERRSVSCLVISGD 58 P +A P R P+P P R P+PP PERR L ISG+ Sbjct: 904 PTSAYPERRGSPVPPVPERRSS-PVPPVPERRGSLTLTISGE 944
>sp|Q7T6X1|YR610_MIMIV Uncharacterized protein R610 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R610 PE=1 SV=2 Length = 332
Score = 33.5 bits (75), Expect = 0.33 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -3
Query: 186 RPGAARPGRSRFPLPREPSRSPQVPLPPAPERR 88 RP + RP R P PR PS P P PP+P R Sbjct: 201 RPPSPRPPSPRPPHPRPPSPRPPHPRPPSPRPR 233
>sp|Q9CWP9|U572_MOUSE UPF0572 protein OS=Mus musculus PE=2 SV=1 Length = 254
Score = 32.7 bits (73), Expect = 0.57 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = -3
Query: 168 PGRSRFPLPREPSRSPQVPLPPAP 97 PG PLP PSR+PQ LPP P Sbjct: 214 PGSPLQPLPPSPSRNPQEQLPPCP 237
>sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1 Length = 1829
Score = 32.7 bits (73), Expect = 0.57 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 6/46 (13%) Frame = -3
Query: 168 PGRSRFPLPRE---PSRSPQVPLPPAPERRSVSCL---VISGDFLF 49 PG SR PLP++ PS+S PP P +R+ S L V+S D LF Sbjct: 1686 PGLSRPPLPQDYEPPSQSSAPSAPPPPPQRNASYLKTQVLSPDSLF 1731
>sp|Q80ZC9|PS1C2_MOUSE Psoriasis susceptibility 1 candidate gene 2 protein homolog OS=Mus musculus GN=Psors1c2 PE=2 SV=1 Length = 134
Score = 32.3 bits (72), Expect = 0.74 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Frame = -3
Query: 216 WRSWADSGCCRPGAARPGRSRFPLPREP----SRSPQVPLPPAPE 94 WR DSG P + PLP +P ++ P+ P PPAPE Sbjct: 71 WRDLPDSGAWPPKPPSTDPPKPPLPDDPWPAGTQPPENPWPPAPE 115
>sp|Q6DRA6|H2B2D_HUMAN Putative histone H2B type 2-D OS=Homo sapiens GN=HIST2H2BD PE=5 SV=3 Length = 164
Score = 31.6 bits (70), Expect = 1.3 Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 14/76 (18%) Frame = -3
Query: 240 YNHQQ-IVEWRSWADSGCCRPGAARPGRSRFPLPREPSRSPQVP-------------LPP 103 YN + I RS CC P A+ P P PR P RSP P LPP Sbjct: 84 YNKRSTITSRRSRRPCACCCP-ASWPST---PCPRAPRRSPSTPAPSESLPGPGARSLPP 139
Query: 102 APERRSVSCLVISGDF 55 + R C V G F Sbjct: 140 SLPPRVAGCFVSKGSF 155
>sp|Q6DN03|H2B2C_HUMAN Putative histone H2B type 2-C OS=Homo sapiens GN=HIST2H2BC PE=5 SV=3 Length = 193
Score = 31.6 bits (70), Expect = 1.3 Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 14/76 (18%) Frame = -3
Query: 240 YNHQQ-IVEWRSWADSGCCRPGAARPGRSRFPLPREPSRSPQVP-------------LPP 103 YN + I RS CC P A+ P P PR P RSP P LPP Sbjct: 84 YNKRSTITSRRSRRPCACCCP-ASWPST---PCPRAPRRSPSTPAPSESLPGPGARSLPP 139
Query: 102 APERRSVSCLVISGDF 55 + R C V G F Sbjct: 140 SLPPRVAGCFVSKGSF 155
>sp|Q5DU25|IQEC2_MOUSE IQ motif and SEC7 domain-containing protein 2 OS=Mus musculus GN=Iqsec2 PE=1 SV=2 Length = 1478
Score = 31.2 bits (69), Expect = 1.7 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%) Frame = -3
Query: 234 HQQIVEWRSWADSGCCRPGAAR----PGRS-----RFPLPREPSRSPQVPLPPAP 97 H+Q+V + GC G + PGR+ +P P P+ +P PLPPAP Sbjct: 606 HRQLV----YEADGCSPHGTLKHKGPPGRAPIPHRHYPAPEGPAPAPPGPLPPAP 656
>sp|Q5JU85|IQEC2_HUMAN IQ motif and SEC7 domain-containing protein 2 OS=Homo sapiens GN=IQSEC2 PE=2 SV=1 Length = 1478
Score = 31.2 bits (69), Expect = 1.7 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%) Frame = -3
Query: 234 HQQIVEWRSWADSGCCRPGAAR----PGRS-----RFPLPREPSRSPQVPLPPAP 97 H+Q+V + GC G + PGR+ +P P P+ +P PLPPAP Sbjct: 606 HRQLV----YEADGCSPHGTLKHKGPPGRAPIPHRHYPAPEGPAPAPPGPLPPAP 656
>sp|P24328|PERT_BORPA Pertactin OS=Bordetella parapertussis GN=prn PE=4 SV=1 Length = 922
Score = 30.8 bits (68), Expect = 2.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -3
Query: 177 AARPGRSRFPLPREPSRSPQVPLPPAPERR 88 A +PG P P +P + PQ P PP P +R Sbjct: 574 APQPGPQPGPQPPQPPQPPQPPQPPQPPQR 603
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LRR9 |
Definition |
tr|B8LRR9|B8LRR9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
50 |
Score (bit) |
47.0 |
E-value |
0.0005 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959154|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_O17, 5' (323 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LRR9|B8LRR9_PICSI Putative uncharacterized protein OS=Picea... 47 5e-04 tr|A9PEP6|A9PEP6_POPTR Putative uncharacterized protein OS=Popul... 40 0.058 tr|Q9LTU5|Q9LTU5_ARATH DNA-damage inducible protein DDI1-like OS... 37 0.37 tr|Q8LF25|Q8LF25_ARATH DNA-damage inducible protein DDI1-like OS... 37 0.37 tr|Q1EBV4|Q1EBV4_ARATH At3g13235 (Putative uncharacterized prote... 37 0.37 tr|A9P3B5|A9P3B5_BRARC Anther-specific proline rich protein OS=B... 37 0.64 tr|A7Q9H3|A7Q9H3_VITVI Chromosome chr19 scaffold_66, whole genom... 37 0.64 tr|Q5B434|Q5B434_EMENI Putative uncharacterized protein OS=Emeri... 37 0.64 tr|B5MDI6|B5MDI6_HUMAN Putative uncharacterized protein FAM83H O... 36 1.1 tr|Q1B0T4|Q1B0T4_MYCSS Integral membrane protein MviN OS=Mycobac... 35 1.9 tr|B4UJY9|B4UJY9_ANASK Patatin OS=Anaeromyxobacter sp. (strain K... 35 2.4 tr|B4WMK3|B4WMK3_9SYNE RND transporter, HAE1/HME family, permeas... 35 2.4 tr|Q6H734|Q6H734_ORYSJ Os02g0198600 protein OS=Oryza sativa subs... 35 2.4 tr|B7ZZ86|B7ZZ86_MAIZE Putative uncharacterized protein OS=Zea m... 35 2.4 tr|A2X229|A2X229_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.4 tr|A8NZ25|A8NZ25_COPC7 Putative uncharacterized protein OS=Copri... 35 2.4 tr|Q67P18|Q67P18_SYMTH NADH dehydrogenase I subunit E OS=Symbiob... 34 3.2 tr|Q2HGL8|Q2HGL8_CHAGB Putative uncharacterized protein OS=Chaet... 34 3.2 tr|Q65029|Q65029_ARMV Polyprotein P2' 119kDa OS=Arabis mosaic vi... 34 4.1 tr|Q4STD2|Q4STD2_TETNG Chromosome undetermined SCAF14243, whole ... 33 5.4 tr|A8LXH2|A8LXH2_SALAI Glycosyl transferase family 51 OS=Salinis... 33 5.4 tr|B8J551|B8J551_9DELT Patatin OS=Anaeromyxobacter dehalogenans ... 33 7.0 tr|Q8W158|Q8W158_BRAOL Anther-specific proline-rich protein OS=B... 33 7.0 tr|Q58NA5|Q58NA5_CHLIN Plus agglutinin (Fragment) OS=Chlamydomon... 33 7.0 tr|A9P3C0|A9P3C0_BRACM Anther-specific proline rich protein OS=B... 33 7.0 tr|A9P3B9|A9P3B9_BRARP Anther-specific proline rich protein OS=B... 33 7.0 tr|A9P3B8|A9P3B8_BRARC Anther-specific proline rich protein OS=B... 33 7.0 tr|A9P3B7|A9P3B7_BRARC Anther-specific proline rich protein OS=B... 33 7.0 tr|A9P3B6|A9P3B6_BRAJU Anther-specific proline rich protein OS=B... 33 7.0 tr|A9P3B4|A9P3B4_BRARA Anther-specific proline rich protein OS=B... 33 7.0
>tr|B8LRR9|B8LRR9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 407
Score = 47.0 bits (110), Expect = 5e-04 Identities = 24/50 (48%), Positives = 34/50 (68%) Frame = +3
Query: 84 RFFSLELEAEELGENVRALLEAETGFSLALLRLVYNSRYLPNSSTLRSAG 233 RF +LE++ +EL ENV+ALLE ET SL +L+Y+ R + N+ L S G Sbjct: 11 RFITLEVDPQELVENVKALLEVETQVSLQQQQLLYHGREIRNTDRLSSIG 60
>tr|A9PEP6|A9PEP6_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 410
Score = 40.0 bits (92), Expect = 0.058 Identities = 21/50 (42%), Positives = 30/50 (60%) Frame = +3
Query: 84 RFFSLELEAEELGENVRALLEAETGFSLALLRLVYNSRYLPNSSTLRSAG 233 + SLE++ E ENV+ALLE ET L +L+YN R + N+ L + G Sbjct: 11 QIISLEVDPHESVENVKALLEVETQVPLQQQQLLYNGREMRNNEKLSALG 60
>tr|Q9LTU5|Q9LTU5_ARATH DNA-damage inducible protein DDI1-like OS=Arabidopsis thaliana PE=4 SV=1 Length = 395
Score = 37.4 bits (85), Expect = 0.37 Identities = 17/50 (34%), Positives = 31/50 (62%) Frame = +3
Query: 84 RFFSLELEAEELGENVRALLEAETGFSLALLRLVYNSRYLPNSSTLRSAG 233 + +L+++++E ENV+ALLE E+ + +L+YN + NS L + G Sbjct: 11 QIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALG 60
>tr|Q8LF25|Q8LF25_ARATH DNA-damage inducible protein DDI1-like OS=Arabidopsis thaliana PE=2 SV=1 Length = 414
Score = 37.4 bits (85), Expect = 0.37 Identities = 17/50 (34%), Positives = 31/50 (62%) Frame = +3
Query: 84 RFFSLELEAEELGENVRALLEAETGFSLALLRLVYNSRYLPNSSTLRSAG 233 + +L+++++E ENV+ALLE E+ + +L+YN + NS L + G Sbjct: 11 QIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALG 60
>tr|Q1EBV4|Q1EBV4_ARATH At3g13235 (Putative uncharacterized protein At3g13235) OS=Arabidopsis thaliana GN=At3g13235 PE=2 SV=1 Length = 414
Score = 37.4 bits (85), Expect = 0.37 Identities = 17/50 (34%), Positives = 31/50 (62%) Frame = +3
Query: 84 RFFSLELEAEELGENVRALLEAETGFSLALLRLVYNSRYLPNSSTLRSAG 233 + +L+++++E ENV+ALLE E+ + +L+YN + NS L + G Sbjct: 11 QIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALG 60
>tr|A9P3B5|A9P3B5_BRARC Anther-specific proline rich protein OS=Brassica rapa var. purpuraria PE=2 SV=1 Length = 517
Score = 36.6 bits (83), Expect = 0.64 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Frame = -3
Query: 183 PGAARPGRSRFPLPREPSR----SPQVPLPPAPERRSVSCLVISGDFLF 49 P A P S P P PS SP PLPP PE +++ + GD +F Sbjct: 155 PSACPPAPSPKPSPPAPSPKPKPSPPAPLPPKPENKTIPAVFFFGDSIF 203
>tr|A7Q9H3|A7Q9H3_VITVI Chromosome chr19 scaffold_66, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033475001 PE=4 SV=1 Length = 410
Score = 36.6 bits (83), Expect = 0.64 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +3
Query: 84 RFFSLELEAEELGENVRALLEAETGFSLALLRLVYNSRYLPNSSTLRSAG 233 + SL+++ +E ENV+ALLE ET L +L++N + + N+ L + G Sbjct: 11 QIISLDVDRDESVENVKALLEVETRVPLQQQQLLFNGQEMRNNEKLSALG 60
>tr|Q5B434|Q5B434_EMENI Putative uncharacterized protein OS=Emericella nidulans GN=AN4696.2 PE=4 SV=1 Length = 1305
Score = 36.6 bits (83), Expect = 0.64 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Frame = -3
Query: 210 SWADSGCCRPGAARPGRSRFPLPREPSRSP---QVPLPPAPERRSVS 79 SW + PG++RP R + + R PSRSP V PAP+R S + Sbjct: 281 SWNEEPNTPPGSSRPARQQHAIDRSPSRSPASLDVKPRPAPKRTSAT 327
>tr|B5MDI6|B5MDI6_HUMAN Putative uncharacterized protein FAM83H OS=Homo sapiens GN=FAM83H PE=4 SV=1 Length = 886
Score = 35.8 bits (81), Expect = 1.1 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = -3
Query: 183 PGAARPGRSRFPLPREPSRSPQVPLPPAPERRSVSCLVISGD 58 P +A P R P+P P R P+PP PERR L ISG+ Sbjct: 611 PTSAYPERRGSPVPPVPERRSS-PVPPVPERRGSLTLTISGE 651
>tr|Q1B0T4|Q1B0T4_MYCSS Integral membrane protein MviN OS=Mycobacterium sp. (strain MCS) GN=Mmcs_5400 PE=4 SV=1 Length = 1263
Score = 35.0 bits (79), Expect = 1.9 Identities = 18/33 (54%), Positives = 21/33 (63%) Frame = -3
Query: 183 PGAARPGRSRFPLPREPSRSPQVPLPPAPERRS 85 PGAARPG R P P P + +VP PAP RR+ Sbjct: 33 PGAARPGPGRRPPPAPPRQ--RVPRGPAPRRRA 63
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