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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959194
Clone id TST39A01NGRL0004_A12
Library
Length 696
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_A12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGTCTCTCTCTCTCTCTCTCACACACACACAAAACACGCACGCGCGCGCGTACTCTTTC
TCCGTCGCTCTGCCTGTCAGCTTAACTCAGATCCCTACAGCTCCCTCATCGGCAGCGACG
TGCCTCTCCCTCGCAAAGGCCCGCAGCAGTTTGCCTTGCGGCATTTATAATTTGCCCCTT
TTCCTCGCAGGAATATTTGATCCTTACAGTAAGTAAAGGGCGGCTCGAAGCTTGCCATGG
CGTCCTTCACAGCCTCTAGCATATGCTTCACATTTCAAGCGGCGGAAGTCAGCCATGGCA
GGTCCTTTGTCAGCAAGCCTTCTTGCAGTGAAGTTATTACAACTGGACTCAGAAGTAGCG
TCTCCAAGCAGGACGTGAAGCTCTGTGAGCAAGCACAGAGAAGAGGGATTCAGTGCATGG
CACAACAGACTGTCTCTCCACTGCTAGAATATTCAGAGAGAGCTGATAGTAGCTTCGCAT
TGCCAACACTGGCTTCATCACCATCATCCCTGGTAGAATCAGGTCAGTATTGGAGTAGCC
CTGCCGATGTGCAACCTGCTAGTTCTGGTTCATCCTCAAGTCAAGCTGACGCTCTCGGAG
GTGTGTCTGTTGCCTCCCTCATGGAACCTGTTGCTGAAGATCTACAGATCTTGAACAGAA
ATCTCCATACTGTCGTTGGCTCTGAGAATCCCTTGC
■■Homology search results ■■ -
sp_hit_id Q9FH76
Definition sp|Q9FH76|ABAH3_ARATH Abscisic acid 8'-hydroxylase 3 OS=Arabidopsis thaliana
Align length 55
Score (bit) 30.8
E-value 7.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959194|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_A12, 5'
         (696 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FH76|ABAH3_ARATH Abscisic acid 8'-hydroxylase 3 OS=Arabidop...    31   7.3  

>sp|Q9FH76|ABAH3_ARATH Abscisic acid 8'-hydroxylase 3 OS=Arabidopsis
           thaliana GN=CYP707A3 PE=1 SV=1
          Length = 463

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -1

Query: 543 QGYSNTDLILPGMMVMKPVLAMRSYYQLSLNILAVERQSVVPCTESLFSVLAHRA 379
           +GY++  + LPG +  K + A +   Q+  NIL+  RQ+    T+ L S +  +A
Sbjct: 204 KGYNSMPINLPGTLFHKAMKARKELAQILANILSKRRQNPSSHTDLLGSFMEDKA 258
tr_hit_id A7P2A9
Definition tr|A7P2A9|A7P2A9_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera
Align length 36
Score (bit) 44.7
E-value 0.006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959194|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_A12, 5'
         (696 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P2A9|A7P2A9_VITVI Chromosome chr19 scaffold_4, whole genome...    45   0.006
tr|A5AYD7|A5AYD7_VITVI Putative uncharacterized protein OS=Vitis...    44   0.010
tr|Q1W5D1|Q1W5D1_HEVBR Solanesyl diphosphate synthase OS=Hevea b...    40   0.11 
tr|Q09IV6|Q09IV6_SOLLC Solanesyl diphosphate synthase OS=Solanum...    40   0.11 
tr|Q0INZ4|Q0INZ4_ORYSJ Os12g0271700 protein (Fragment) OS=Oryza ...    40   0.19 
tr|B4FUE4|B4FUE4_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.24 
tr|A9TB35|A9TB35_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.24 
tr|A9S7J9|A9S7J9_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.24 
tr|Q75HZ9|Q75HZ9_ORYSJ Os05g0582300 protein OS=Oryza sativa subs...    39   0.41 
tr|B8AZL8|B8AZL8_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.41 
tr|Q9SHG4|Q9SHG4_ARATH Very similar to prenyl transferase OS=Ara...    38   0.70 
tr|Q76FS5|Q76FS5_ARATH Solanesyl diphosphate synthase (At1g17050...    38   0.70 
tr|Q9SYN0|Q9SYN0_ARATH T30F21.15 protein OS=Arabidopsis thaliana...    37   1.2  
tr|Q8S948|Q8S948_ARATH Solanesyl diphosphate synthase (At1g78510...    37   1.2  
tr|Q0WMS5|Q0WMS5_ARATH Polyprenyl diphosphate synthase OS=Arabid...    37   1.2  
tr|A8MQY5|A8MQY5_ARATH Uncharacterized protein At1g78510.2 OS=Ar...    37   1.2  
tr|B6TAR5|B6TAR5_MAIZE Prenyl transferase OS=Zea mays PE=2 SV=1        37   1.6  
tr|Q84LG1|Q84LG1_ARATH Putative geranyl diphosphate synthase (GP...    35   4.6  
tr|Q917Y2|Q917Y2_9CALI Minor structural protein OS=Norwalk-like ...    35   4.6  
tr|A2R9V2|A2R9V2_ASPNC Similarity: similarity corresponds to fun...    34   7.9  

>tr|A7P2A9|A7P2A9_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027948001
           PE=3 SV=1
          Length = 420

 Score = 44.7 bits (104), Expect = 0.006
 Identities = 19/36 (52%), Positives = 29/36 (80%)
 Frame = +3

Query: 588 DALGGVSVASLMEPVAEDLQILNRNLHTVVGSENPL 695
           ++   +S+AS  E VA+DLQILN+NL ++VG+ENP+
Sbjct: 91  ESSSSISLASFFEVVADDLQILNQNLQSIVGAENPV 126


>tr|A5AYD7|A5AYD7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004505 PE=3 SV=1
          Length = 421

 Score = 43.9 bits (102), Expect = 0.010
 Identities = 19/36 (52%), Positives = 29/36 (80%)
 Frame = +3

Query: 588 DALGGVSVASLMEPVAEDLQILNRNLHTVVGSENPL 695
           ++   +S+AS  E VA+DLQILN+NL ++VG+ENP+
Sbjct: 92  ESSSSMSLASFFEVVADDLQILNQNLQSIVGAENPV 127


>tr|Q1W5D1|Q1W5D1_HEVBR Solanesyl diphosphate synthase OS=Hevea
           brasiliensis PE=2 SV=1
          Length = 418

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 17/36 (47%), Positives = 28/36 (77%)
 Frame = +3

Query: 588 DALGGVSVASLMEPVAEDLQILNRNLHTVVGSENPL 695
           ++ G +S+ ++ E VA DLQ LN+NL ++VG+ENP+
Sbjct: 89  ESRGPISLINVFEAVAGDLQTLNQNLRSIVGAENPV 124


>tr|Q09IV6|Q09IV6_SOLLC Solanesyl diphosphate synthase OS=Solanum
           lycopersicum GN=SppS PE=3 SV=1
          Length = 398

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = +3

Query: 603 VSVASLMEPVAEDLQILNRNLHTVVGSENPL 695
           +S+ ++ E VA+DL  LN+NLH +VG+ENP+
Sbjct: 74  ISLTNVFEVVADDLLTLNKNLHNIVGAENPV 104


>tr|Q0INZ4|Q0INZ4_ORYSJ Os12g0271700 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os12g0271700 PE=3 SV=1
          Length = 372

 Score = 39.7 bits (91), Expect = 0.19
 Identities = 18/31 (58%), Positives = 26/31 (83%)
 Frame = +3

Query: 603 VSVASLMEPVAEDLQILNRNLHTVVGSENPL 695
           +SV+SL+E VA+DL  LN NL ++VG+ENP+
Sbjct: 48  ISVSSLLEVVADDLLKLNNNLKSLVGAENPV 78


>tr|B4FUE4|B4FUE4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 424

 Score = 39.3 bits (90), Expect = 0.24
 Identities = 25/61 (40%), Positives = 33/61 (54%)
 Frame = +3

Query: 513 VESGQYWSSPADVQPAXXXXXXXQADALGGVSVASLMEPVAEDLQILNRNLHTVVGSENP 692
           V S Q   +  DV PA               SV+SL+E V+EDL  LN NL ++VG+ENP
Sbjct: 71  VSSSQPGLAAIDV-PAATIPDATTTSVTERTSVSSLLEVVSEDLLSLNNNLKSLVGAENP 129

Query: 693 L 695
           +
Sbjct: 130 V 130


>tr|A9TB35|A9TB35_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_142892 PE=3 SV=1
          Length = 344

 Score = 39.3 bits (90), Expect = 0.24
 Identities = 15/38 (39%), Positives = 29/38 (76%)
 Frame = +3

Query: 582 QADALGGVSVASLMEPVAEDLQILNRNLHTVVGSENPL 695
           +A+    +++A L+ PV++DL++LN NL  +VG++NP+
Sbjct: 13  KAEGKSKLTLADLVNPVSDDLRLLNDNLQKIVGADNPM 50


>tr|A9S7J9|A9S7J9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_125303 PE=3 SV=1
          Length = 356

 Score = 39.3 bits (90), Expect = 0.24
 Identities = 15/31 (48%), Positives = 26/31 (83%)
 Frame = +3

Query: 603 VSVASLMEPVAEDLQILNRNLHTVVGSENPL 695
           +++A L+ PV++DLQ+LN NL  +VG++NP+
Sbjct: 32  LTLADLVAPVSDDLQLLNDNLQKIVGADNPM 62


>tr|Q75HZ9|Q75HZ9_ORYSJ Os05g0582300 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0035N21.17 PE=2 SV=2
          Length = 403

 Score = 38.5 bits (88), Expect = 0.41
 Identities = 17/31 (54%), Positives = 26/31 (83%)
 Frame = +3

Query: 603 VSVASLMEPVAEDLQILNRNLHTVVGSENPL 695
           +SV+SL+E V++DL  LN NL ++VG+ENP+
Sbjct: 79  ISVSSLLEVVSDDLLKLNNNLKSLVGAENPV 109


>tr|B8AZL8|B8AZL8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19015 PE=4 SV=1
          Length = 414

 Score = 38.5 bits (88), Expect = 0.41
 Identities = 18/30 (60%), Positives = 25/30 (83%)
 Frame = +3

Query: 606 SVASLMEPVAEDLQILNRNLHTVVGSENPL 695
           SV+SL+E VA+DL  LN NL ++VG+ENP+
Sbjct: 91  SVSSLLEVVADDLLKLNNNLKSLVGAENPV 120