DK959224 |
Clone id |
TST39A01NGRL0004_B20 |
Library |
TST39 |
Length |
675 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_B20. 5' end sequence. |
Accession |
DK959224 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL539Contig1 |
Sequence |
TTACCTAGCTGGTGTTGTCGCCAGTCCGTGAGCAGCGAAGGCACTCCCGCCTCTACATCT TGACGAGCGACGGCTAGCAGGAGTCTAGAGTCAAAGAATGTATTCTGCGGAGTTTTTTAA CAGATGTAACATAACACTTCCAGATGCTCTTCTTCAAGGAGCTGGTCGTAGTCATGGAGG CAGATTCATACTTGCAAAATCAAGGGATGATGATTCTTATAGACTGCCTTTGTCAAAGAG TATGCATCTGAGGCATTTAAAAGATTCTCCAAGGACCTCTTTAAGGAAAAGTAAAGGTAT AATGAGGTCAGTAGCTAGTGTATCATCTGCTGAGGACTCTGCAAATACGGAATATCTGGA GAACCAGCCCAAAGAAGGTGCCTCGGGGTTGTATTTTGGGCAGCCAACACAAAAGGAGGA GGTGATCGCTATACGTGAAAGTGCTGTACGAGCAAGTCTTATGAAGAAGCTAAGTGACAT CAATCTTTATGGGCGCCATCTGCAAAGACAGTTACGTGAAAAGGAAGATGCCTTATTGAA GTGCAAAAGTGAACTGGAAACCATGGAGTCTGATATCCAGATCCTTGCAAGGTTGGCTCA AGAAATTGCAAAAGATGGTGTAAAGCCAGGCACAAGGCAAATTGATGGAAAGTACATCCA GTCTCACGTCGCTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3V6T2 |
Definition |
sp|Q3V6T2|GRDN_HUMAN Girdin OS=Homo sapiens |
Align length |
58 |
Score (bit) |
38.1 |
E-value |
0.043 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PRC0 |
Definition |
tr|A7PRC0|A7PRC0_VITVI Chromosome chr14 scaffold_26, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
111 |
Score (bit) |
87.8 |
E-value |
6.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959224|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0004_B20, 5' (675 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PRC0|A7PRC0_VITVI Chromosome chr14 scaffold_26, whole genom... 88 6e-16 tr|Q1M2Z4|Q1M2Z4_PLAAC Ampk protein (Fragment) OS=Platanus aceri... 87 7e-16 tr|A9RYN0|A9RYN0_PHYPA Predicted protein OS=Physcomitrella paten... 82 2e-14 tr|Q6Z0Y8|Q6Z0Y8_ORYSJ Os02g0135900 protein OS=Oryza sativa subs... 82 3e-14 tr|B8AHD0|B8AHD0_ORYSI Putative uncharacterized protein OS=Oryza... 82 3e-14 tr|A3A2X1|A3A2X1_ORYSJ Putative uncharacterized protein OS=Oryza... 82 3e-14 tr|A9PE01|A9PE01_POPTR Putative uncharacterized protein OS=Popul... 78 6e-13 tr|B4FI49|B4FI49_MAIZE Putative uncharacterized protein OS=Zea m... 77 1e-12 tr|Q94AX2|Q94AX2_ARATH AT5g39790/MKM21_80 OS=Arabidopsis thalian... 77 1e-12 tr|A9RQ51|A9RQ51_PHYPA Predicted protein (Fragment) OS=Physcomit... 64 9e-09 tr|Q5R4Y8|Q5R4Y8_PONAB Putative uncharacterized protein DKFZp459... 38 0.51 tr|A6QQ99|A6QQ99_BOVIN CCDC88A protein (Fragment) OS=Bos taurus ... 38 0.51 tr|B6PIQ6|B6PIQ6_BRAFL Putative uncharacterized protein (Fragmen... 38 0.51 tr|B6M246|B6M246_BRAFL Putative uncharacterized protein (Fragmen... 38 0.51 tr|Q9UI01|Q9UI01_HUMAN Putative uncharacterized protein OS=Homo ... 38 0.51 tr|Q86YH1|Q86YH1_HUMAN CCDC88A protein (Fragment) OS=Homo sapien... 38 0.51 tr|Q6PAV0|Q6PAV0_HUMAN CCDC88A protein (Fragment) OS=Homo sapien... 38 0.51 tr|Q6DCA5|Q6DCA5_HUMAN CCDC88A protein (Fragment) OS=Homo sapien... 38 0.51 tr|O14997|O14997_HUMAN Putative uncharacterized protein (Fragmen... 38 0.51 tr|B7ZM78|B7ZM78_HUMAN Putative uncharacterized protein OS=Homo ... 38 0.51 tr|Q0ZCE5|Q0ZCE5_POPTR Putative uncharacterized protein OS=Popul... 37 0.87 tr|Q70FJ1|Q70FJ1_MOUSE A-kinase anchor protein 9 OS=Mus musculus... 37 1.1 tr|Q9W6V0|Q9W6V0_CHICK Hyperion protein, 419 kD isoform OS=Gallu... 36 1.9 tr|Q5SV02|Q5SV02_MOUSE RAD50 homolog (S. cerevisiae) OS=Mus musc... 36 2.5 tr|Q3UNL2|Q3UNL2_MOUSE Putative uncharacterized protein OS=Mus m... 36 2.5 tr|Q3ULX6|Q3ULX6_MOUSE Putative uncharacterized protein OS=Mus m... 36 2.5 tr|A8Y5I3|A8Y5I3_MOUSE RAD50 homolog (S. cerevisiae) (Fragment) ... 36 2.5 tr|B5FW66|B5FW66_OTOGA RAD50 homolog isoform 1 (Predicted) OS=Ot... 35 3.3 tr|Q4Q8L7|Q4Q8L7_LEIMA RAD50 DNA repair-like protein OS=Leishman... 35 3.3 tr|Q24F20|Q24F20_TETTH Putative uncharacterized protein OS=Tetra... 35 3.3
>tr|A7PRC0|A7PRC0_VITVI Chromosome chr14 scaffold_26, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022432001 PE=4 SV=1 Length = 317
Score = 87.8 bits (216), Expect = 6e-16 Identities = 50/111 (45%), Positives = 68/111 (61%) Frame = +2
Query: 338 SANTEYLENQPKEGASGLYFGQPTQKEEVIAIRESAVRASLMKKLSDINLYGRHLQRQLR 517 S N E+ P+E QP +E+ + + R L+KKLS+ N R L+RQL Sbjct: 106 SDNENASEDSPEE-----LLDQPLGSDELKTLLVDSERTKLIKKLSEANQQNRILKRQLY 160
Query: 518 EKEDALLKCKSELETMESDIQILARLAQEIAKDGVKPGTRQIDGKYIQSHV 670 KEDAL+ KSEL ME ++Q L LA+EIAK G+ G+R+I+GKYIQSH+ Sbjct: 161 IKEDALVNFKSELAVMELEVQALVSLAEEIAKSGIPKGSRKINGKYIQSHL 211
>tr|Q1M2Z4|Q1M2Z4_PLAAC Ampk protein (Fragment) OS=Platanus acerifolia GN=ampk PE=2 SV=1 Length = 205
Score = 87.4 bits (215), Expect = 7e-16 Identities = 43/100 (43%), Positives = 69/100 (69%) Frame = +2
Query: 371 KEGASGLYFGQPTQKEEVIAIRESAVRASLMKKLSDINLYGRHLQRQLREKEDALLKCKS 550 ++ +S + QP + + ++ + R L++KLS+ N + R L+RQL KEDAL+ KS Sbjct: 99 EKDSSKEFLSQPLDGDGLKSLLADSERTKLIRKLSEANQHNRFLKRQLLIKEDALVNFKS 158
Query: 551 ELETMESDIQILARLAQEIAKDGVKPGTRQIDGKYIQSHV 670 EL +E +IQ L +LA+E+AK G++ G+R+I+GKYIQSH+ Sbjct: 159 ELSVIELEIQALVKLAEEVAKSGIQQGSRKINGKYIQSHL 198
>tr|A9RYN0|A9RYN0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161880 PE=4 SV=1 Length = 312
Score = 82.4 bits (202), Expect = 2e-14 Identities = 37/75 (49%), Positives = 55/75 (73%) Frame = +2
Query: 449 RASLMKKLSDINLYGRHLQRQLREKEDALLKCKSELETMESDIQILARLAQEIAKDGVKP 628 + L+ KLS N Y R LQ LR+KE+AL+K +SEL M+ ++Q+L R+ EI + G+KP Sbjct: 131 KLQLLNKLSVANQYIRQLQHDLRDKEEALVKTRSELSAMQMELQVLVRILHEIGRQGIKP 190
Query: 629 GTRQIDGKYIQSHVA 673 GT++I+G+YI SH+A Sbjct: 191 GTQKINGRYIHSHLA 205
>tr|Q6Z0Y8|Q6Z0Y8_ORYSJ Os02g0135900 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0081C13.12 PE=4 SV=1 Length = 306
Score = 82.0 bits (201), Expect = 3e-14 Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 10/123 (8%) Frame = +2
Query: 332 EDSANTEYLENQPKEGAS--GLYFGQPTQK--------EEVIAIRESAVRASLMKKLSDI 481 ED + + P E S G +G P++ +E+ ++ + R+ L+KKLS+ Sbjct: 78 EDGPASSDSTSSPSEQTSDGGEVYGDPSENLNSRKLKSDELKSLLADSERSKLLKKLSEA 137
Query: 482 NLYGRHLQRQLREKEDALLKCKSELETMESDIQILARLAQEIAKDGVKPGTRQIDGKYIQ 661 N Y R L+RQL+ K++ ++K KSEL ME ++Q L LA+EIA V G+R+I+GKYIQ Sbjct: 138 NQYNRFLKRQLQMKDNDVVKFKSELAVMELELQALVALAEEIANFDVPSGSRKINGKYIQ 197
Query: 662 SHV 670 SH+ Sbjct: 198 SHL 200
>tr|B8AHD0|B8AHD0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05763 PE=4 SV=1 Length = 460
Score = 82.0 bits (201), Expect = 3e-14 Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 10/123 (8%) Frame = +2
Query: 332 EDSANTEYLENQPKEGAS--GLYFGQPTQK--------EEVIAIRESAVRASLMKKLSDI 481 ED + + P E S G +G P++ +E+ ++ + R+ L+KKLS+ Sbjct: 232 EDGPASSDSTSSPSEQTSDGGEVYGDPSENLNSRKLKSDELKSLLADSERSKLLKKLSEA 291
Query: 482 NLYGRHLQRQLREKEDALLKCKSELETMESDIQILARLAQEIAKDGVKPGTRQIDGKYIQ 661 N Y R L+RQL+ K++ ++K KSEL ME ++Q L LA+EIA V G+R+I+GKYIQ Sbjct: 292 NQYNRFLKRQLQMKDNDVVKFKSELAVMELELQALVALAEEIANFDVPSGSRKINGKYIQ 351
Query: 662 SHV 670 SH+ Sbjct: 352 SHL 354
>tr|A3A2X1|A3A2X1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_005143 PE=4 SV=1 Length = 463
Score = 82.0 bits (201), Expect = 3e-14 Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 10/123 (8%) Frame = +2
Query: 332 EDSANTEYLENQPKEGAS--GLYFGQPTQK--------EEVIAIRESAVRASLMKKLSDI 481 ED + + P E S G +G P++ +E+ ++ + R+ L+KKLS+ Sbjct: 235 EDGPASSDSTSSPSEQTSDGGEVYGDPSENLNSRKLKSDELKSLLADSERSKLLKKLSEA 294
Query: 482 NLYGRHLQRQLREKEDALLKCKSELETMESDIQILARLAQEIAKDGVKPGTRQIDGKYIQ 661 N Y R L+RQL+ K++ ++K KSEL ME ++Q L LA+EIA V G+R+I+GKYIQ Sbjct: 295 NQYNRFLKRQLQMKDNDVVKFKSELAVMELELQALVALAEEIANFDVPSGSRKINGKYIQ 354
Query: 662 SHV 670 SH+ Sbjct: 355 SHL 357
>tr|A9PE01|A9PE01_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 299
Score = 77.8 bits (190), Expect = 6e-13 Identities = 44/113 (38%), Positives = 69/113 (61%) Frame = +2
Query: 332 EDSANTEYLENQPKEGASGLYFGQPTQKEEVIAIRESAVRASLMKKLSDINLYGRHLQRQ 511 ++ +++E L +P + Q +E+ A+ + R +L KKLS+ N R L+RQ Sbjct: 89 DEGSSSEDLPEEPLD--------QSLSSDELKALLLDSQRKNLTKKLSEANQQNRFLKRQ 140
Query: 512 LREKEDALLKCKSELETMESDIQILARLAQEIAKDGVKPGTRQIDGKYIQSHV 670 L EDAL+ KSEL ME +IQ L L++EIA+ + G+R+I+GKY+QSH+ Sbjct: 141 LHVMEDALVNFKSELAVMELEIQALVTLSEEIAQYEIPEGSRKINGKYVQSHL 193
>tr|B4FI49|B4FI49_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 305
Score = 77.0 bits (188), Expect = 1e-12 Identities = 38/85 (44%), Positives = 61/85 (71%) Frame = +2
Query: 416 EEVIAIRESAVRASLMKKLSDINLYGRHLQRQLREKEDALLKCKSELETMESDIQILARL 595 +E+ A+ + R+ L+++LS+ N Y R L+RQL+ K+DA++K K EL +E ++Q L L Sbjct: 115 DELKALLADSERSRLLRRLSEANQYNRFLKRQLQIKDDAVVKFKGELAVLELEMQALVGL 174
Query: 596 AQEIAKDGVKPGTRQIDGKYIQSHV 670 A+E+A V G+R+I+GKYIQSH+ Sbjct: 175 AEEVANFDVPLGSRKINGKYIQSHL 199
>tr|Q94AX2|Q94AX2_ARATH AT5g39790/MKM21_80 OS=Arabidopsis thaliana PE=2 SV=1 Length = 277
Score = 76.6 bits (187), Expect = 1e-12 Identities = 38/90 (42%), Positives = 59/90 (65%) Frame = +2
Query: 401 QPTQKEEVIAIRESAVRASLMKKLSDINLYGRHLQRQLREKEDALLKCKSELETMESDIQ 580 +P +E+ ++ R+ L+KKLS+ N R L+RQL+ +E + K+EL ME ++Q Sbjct: 82 RPLTSDELKSLLIDTERSKLVKKLSEANQQNRFLKRQLKTQEHEITNIKTELALMELEVQ 141
Query: 581 ILARLAQEIAKDGVKPGTRQIDGKYIQSHV 670 L +LA+EIA G+ G+R+I GKYIQSH+ Sbjct: 142 ALVKLAEEIANLGIPQGSRKISGKYIQSHL 171
>tr|A9RQ51|A9RQ51_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_45927 PE=4 SV=1 Length = 179
Score = 63.9 bits (154), Expect = 9e-09 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = +2
Query: 449 RASLMKKLSDINLYGRHLQRQLREKEDALLKCKSELETMESDIQILARLAQEIAKDGVKP 628 R+ L+ KLS+ N Y HLQ +L+ KED+L EL ME ++Q+L +AQEI+ +KP Sbjct: 1 RSKLLGKLSEANQYISHLQYELQLKEDSLTDTGKELSAMEMELQVLIDMAQEISGQIIKP 60
Query: 629 GTRQIDGKYIQSHV 670 G+R+I+G + S++ Sbjct: 61 GSRKINGLDLHSYL 74
|