DK959267
Clone id TST39A01NGRL0004_D15
Library
Length 695
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_D15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCATACATATCTTATCTCTCTCATTTTTTGTGTGTACAGCTCGTAACCTTATCTTCTCCG
TCTCTTCTCTACACTTCTCCATCCCCCTGAAGCCATGAGCATCCGTGACTCTGTCCGCTT
CCGTGTCGACTCCACAAATGGTATCAGAGCACTAGCTTTGTCTTGGGTAAAAAGCTCCTG
GAAGGAAGAGTTTGAGCAGACAGGAAACAAAGGGGGAGGCTCTGAGAGAGTTGGAAGAAC
AACCTTGTTGATCTCACTCTCTGCGGGGTTGTCTTATTTCAGCTCCGACGGCTGTTGGTG
GCACTACCACAACAATGCCCATGTAAGGGCGGTTCAACCATCAATGCAGTGCCTAAGAGG
GCAGCACTACCGACAAACAAGAGAAGGCCGGCTAGGCTCAGGAGGCTGTCAGGGGCTCTG
GGAGTAGACCAAGGGCACGATTGCAGGAGAAGGCTCGTTCATGTAGGAGAAGGCAACAAC
AACACACAAGGAGTGGGGGTTTTGAGAGCACTGCAGAGGGGCGCCAGGCCTTGCACATGG
CAGCTACATAAGCCTCAAGGGATCTCTACAGTAAGCTTGCATGACGTCATAAGGTAGTAC
ATGAGACAGGGGTCCATGCCTAGACCACGGATCAAGCTCGAGCCATGGTGCTGACAGAGT
CGGCAGCGTGGTAGAGTGACGAGTCCATGTCATCA
■■Homology search results ■■ -
sp_hit_id Q5FVJ4
Definition sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus
Align length 104
Score (bit) 32.3
E-value 2.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959267|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_D15, 5'
(695 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus GN=... 32 2.5
sp|Q924N4|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus m... 32 4.2
sp|Q8NC24|RELL2_HUMAN RELT-like protein 2 OS=Homo sapiens GN=REL... 32 4.2
sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis glossi... 31 7.2
sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=... 30 9.5
sp|Q8BRJ3|RELL2_MOUSE RELT-like protein 2 OS=Mus musculus GN=Rel... 30 9.5
sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment) OS=C... 30 9.5

>sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus
GN=Rell2 PE=2 SV=1
Length = 302

Score = 32.3 bits (72), Expect = 2.5
Identities = 32/104 (30%), Positives = 45/104 (43%)
Frame = +2

Query: 215 GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREGRL 394
G SE G T L S+ A S DG H+H H+ + P + C R + R+GR
Sbjct: 94 GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCIHCSRSKRPPLVRQGRS 149

Query: 395 GSGGCQGLWE*TKGTIAGEGSFM*EKATTTHKEWGF*EHCRGAP 526
G +G + T+ G F + T K +G EH G+P
Sbjct: 150 KEG--KGRPRPGETTVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|Q924N4|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus
musculus GN=Slc12a6 PE=1 SV=1
Length = 1150

Score = 31.6 bits (70), Expect = 4.2
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Frame = +2

Query: 77 LHPPEAMSIRDSVRFRV------------DSTNGIRALALSWVKSSWKEEFEQTGNKGGG 220
+HPPEA + SVRF V D++ + + + S V+ S +E +T
Sbjct: 1 MHPPEATTKMSSVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVRFSSRESVPETSRSEPM 60

Query: 221 SERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREG 388
SE G TT L +++ SSD +N PS + G+H + +G
Sbjct: 61 SELSGATTSLATVALDP---SSDRT-----SNPQDVTEDPSQNSITGEHSQLLDDG 108


>sp|Q8NC24|RELL2_HUMAN RELT-like protein 2 OS=Homo sapiens GN=RELL2
PE=1 SV=1
Length = 303

Score = 31.6 bits (70), Expect = 4.2
Identities = 32/104 (30%), Positives = 44/104 (42%)
Frame = +2

Query: 215 GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREGRL 394
G SE G T L S+ A S DG H+H H+ + P + C R + R+GR
Sbjct: 94 GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCLHCSRSKRPPLVRQGRS 149

Query: 395 GSGGCQGLWE*TKGTIAGEGSFM*EKATTTHKEWGF*EHCRGAP 526
G + T T+ G F + T K +G EH G+P
Sbjct: 150 KEGKSRPRTGET--TVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis
glossinidius (strain morsitans) GN=rplR PE=3 SV=1
Length = 117

Score = 30.8 bits (68), Expect = 7.2
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2

Query: 122 RVDSTNGIRAL-ALSWVKSSWKEEFEQTGNKGGGSERVGRTTLLISLSAGLSYFSSDGCW 298
+V + NG L A S V+ + E+ + TGNK + VG+T + +L G+ S D
Sbjct: 38 QVIAPNGSEVLVAASTVEKAIAEQLKGTGNKDAAAA-VGKTIAVRALEKGIKDVSFDRSG 96

Query: 299 WHYHNNAHVRA 331
+ YH A
Sbjct: 97 FQYHGRVQALA 107


>sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=Mus
musculus GN=Ssh1 PE=1 SV=1
Length = 1042

Score = 30.4 bits (67), Expect = 9.5
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Frame = +1

Query: 181 EGRV*ADRKQRGRL*ESWKNNLVDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKR 360
EG + A +++ +L W+ D T+ F L AL Q PC +T +P R
Sbjct: 444 EGILDASKQRHNKL---WRQQPTDDTIAEPSEFLPETLDGALDAQLPCLDDTTHPGLP-R 499

Query: 361 AALPTNKRRPARLRRLSGALGVDQGHDCRRRLVHVGE-------GNNNTQGVGVLRAL-- 513
+ P P RRLS L + HD LVH+ + +Q V V + +
Sbjct: 500 SLAPGGPALPCCFRRLSDPLLLPH-HDETGGLVHLEDLEKDALLEEEESQPVEVHKLVQH 558

Query: 514 -QRGARPC 534
Q GAR C
Sbjct: 559 PQEGARLC 566


>sp|Q8BRJ3|RELL2_MOUSE RELT-like protein 2 OS=Mus musculus GN=Rell2
PE=2 SV=1
Length = 303

Score = 30.4 bits (67), Expect = 9.5
Identities = 31/104 (29%), Positives = 44/104 (42%)
Frame = +2

Query: 215 GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREGRL 394
G SE G T L S+ A S DG H+H H+ + P + C R + R+GR
Sbjct: 94 GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCIHCSRSKRPPLVRQGRS 149

Query: 395 GSGGCQGLWE*TKGTIAGEGSFM*EKATTTHKEWGF*EHCRGAP 526
G + + T+ G F + T K +G EH G+P
Sbjct: 150 KEGKSRP--RPGETTVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment)
OS=Canis familiaris GN=CUX1 PE=2 SV=1
Length = 975

Score = 30.4 bits (67), Expect = 9.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3

Query: 405 AVRGSGSRPRARLQEKARSCRRRQQQHTRSGG 500
A RG RP AR + + R RRR+++H R GG
Sbjct: 857 AARGPSRRPGARAKPRRR--RRRRRRHARGGG 886


tr_hit_id B3K5R8
Definition tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR OS=Geobacillus sp. Y412MC10
Align length 112
Score (bit) 38.1
E-value 0.54
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959267|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_D15, 5'
(695 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR O... 38 0.54
tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira pseudo... 37 0.92
tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein OS=Botry... 34 7.8

>tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR
OS=Geobacillus sp. Y412MC10 GN=GYMC10DRAFT_1005 PE=4
SV=1
Length = 260

Score = 38.1 bits (87), Expect = 0.54
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = +1

Query: 226 ESWKNNLVDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKRAALPTNKRRPARLRR 405
ESW ++L DL L G + F A+P GG+ IN A P P+ + R
Sbjct: 107 ESWASDL-DLKLFGAIRFSR----AAVPHLRNSGGGAIINVTTSWAKTPPASSMPSSVSR 161

Query: 406 LSG-ALGVDQGHDCRRRLVHVGEGNNNTQGVGVLRALQRGARPCTWQLHKPQ 558
+G A+ HD + + V NT +G +R+ Q AR W+ P+
Sbjct: 162 AAGQAMTKAMSHDLAKDHIRV-----NTVCIGTIRSAQLEAR---WKRESPE 205


>tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira
pseudonana CCMP1335 GN=THAPS_10869 PE=4 SV=1
Length = 414

Score = 37.4 bits (85), Expect = 0.92
Identities = 25/65 (38%), Positives = 32/65 (49%)
Frame = +2

Query: 68 STLLHPPEAMSIRDSVRFRVDSTNGIRALALSWVKSSWKEEFEQTGNKGGGSERVGRTTL 247
ST HPP + S+R+R++S + A K WK +FE NK GGS G T L
Sbjct: 2 STKSHPPSVSLGKPSLRYRLESYYSLIAPDAIADKEDWKRKFEIIYNKFGGSVE-GETRL 60

Query: 248 LISLS 262
LS
Sbjct: 61 ANKLS 65


>tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein
OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_15625
PE=4 SV=1
Length = 371

Score = 34.3 bits (77), Expect = 7.8
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Frame = -3

Query: 267 PAESEINKVVLPT----LSEPPP---LFPVCSNSSFQELFTQDKASALIPFVESTRK 118
P + NK V+P L EPPP LFP ++SSF + ++ +AL P + TR+
Sbjct: 148 PKKQRSNKQVVPPIIIGLHEPPPQAALFPPIASSSFHDSHGRNTLNALAPKITETRE 204