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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959270
Clone id TST39A01NGRL0004_D18
Library
Length 674
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_D18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAAAGATAGCTCTGCACACACAGCTGGTTTTCCTTCTCCTCCTCCTCGTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACTGTCA
CCCACCCACCCACTCACCAGACAGTGATAGCGACAAATTGTTAAACCCACATTTCCTTGC
ATGTGTTCGCCGTGTCACACGAGCCGCAAGTAGCTGGGCGAAGGCGATCTTGGAGCCCCA
CAGAGGAAACTTGCGCGTCAGCATCTCTCAGGGAGTGAAAGAGGATTTGTTCTGTCATCC
ATTGTGGTATTTTCCAAATAGCAAGCCATCCTTTGAACCTCAGGATGGCTCTAAATCTGA
CGACATTACACTCACCCTCTTCTCCAAGCGTATCTGCTCCTCAGAAGCTATCAATTCTTG
CCTCTGCCCTTAATGGATGTCAGCCTAACTACAAACCAAGCATAAGGGCCTCACTATATT
ACCCGTTTGAACCTTACTCCATTTCACTAGTGCATCTCGCAACCTTCAGCAAAAGCACAA
GAATTGTTGAAGAGTCATCTCACTCTCAAAGGTTCAGGGTCAGTCAAAGTGCTTCCTCCA
CTTTGTATCCAGCGGAGCTGGCCAGTGGAGGTGAGGGAGGTGGTGATGATGCAAATGGTA
ATGATAATGGCGGT
■■Homology search results ■■ -
sp_hit_id Q9CTG6
Definition sp|Q9CTG6|AT132_MOUSE Probable cation-transporting ATPase 13A2 OS=Mus musculus
Align length 99
Score (bit) 37.7
E-value 0.056
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959270|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_D18, 5'
         (674 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CTG6|AT132_MOUSE Probable cation-transporting ATPase 13A2 O...    38   0.056
sp|Q29485|PLMN_ERIEU Plasminogen OS=Erinaceus europaeus GN=PLG P...    33   1.8  
sp|A5EVQ3|LIPA_DICNV Lipoyl synthase OS=Dichelobacter nodosus (s...    31   5.2  
sp|Q3UHK6|TEN4_MOUSE Teneurin-4 OS=Mus musculus GN=Odz4 PE=2 SV=2      31   6.8  

>sp|Q9CTG6|AT132_MOUSE Probable cation-transporting ATPase 13A2
           OS=Mus musculus GN=Atp13a2 PE=2 SV=2
          Length = 1169

 Score = 37.7 bits (86), Expect = 0.056
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = +3

Query: 216 GRRRSWSPTEETCASASLRE*KRICSVIHCGIFQIASHPLNLRMALNLTTLHSPSSPSVS 395
           G+R  W  T++     SL +  R C  +HC     +S  L+L+      T++ P+  S+ 
Sbjct: 165 GQRYVWMETQQAFCQVSLLDHSRTCDDVHC-----SSSGLSLQDQATRKTIYGPNVISIP 219

Query: 396 APQKLSILA-SALNGCQPNYKPSIRASLYYPFEPYSISL 509
               L +LA  ALN              YY F+ +SI+L
Sbjct: 220 VKSYLQLLADEALNP-------------YYGFQAFSIAL 245


>sp|Q29485|PLMN_ERIEU Plasminogen OS=Erinaceus europaeus GN=PLG PE=2
           SV=1
          Length = 810

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 242 CGAPRSPS-PSYLRLV*HGEHMQGNVGLTICRYHC 141
           C  P  PS P+Y  L+ +GEH QGNV +T+    C
Sbjct: 262 CTTPPPPSGPTYQCLMGNGEHYQGNVAVTVSGLTC 296


>sp|A5EVQ3|LIPA_DICNV Lipoyl synthase OS=Dichelobacter nodosus
           (strain VCS1703A) GN=lipA PE=3 SV=1
          Length = 324

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +2

Query: 170 HFLACVRRVTRAASSWAKAILEPH---RGNLRVSISQGVKEDLFCHPLWYFP 316
           HF AC+R + R +      IL P    R  L V I      D+F H L   P
Sbjct: 152 HFAACIREIRRVSPKMTIEILTPDFRGRAELAVQILSATPPDVFNHNLETIP 203


>sp|Q3UHK6|TEN4_MOUSE Teneurin-4 OS=Mus musculus GN=Odz4 PE=2 SV=2
          Length = 2771

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +3

Query: 375  PSSPSVSAPQKLSILA------SALNGCQPNYKPSIRASLYYPFEPYSISLVHL 518
            P  P + A Q+  ++A      S L+   P YK  +R SL +P  P+++  VHL
Sbjct: 1042 PIVPEIQALQEEIVIAGCKMRLSYLSSRTPGYKSVLRISLTHPTIPFNLMKVHL 1095
tr_hit_id Q8CIJ9
Definition tr|Q8CIJ9|Q8CIJ9_MOUSE Atp13a2 protein OS=Mus musculus
Align length 99
Score (bit) 37.7
E-value 0.67
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959270|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_D18, 5'
         (674 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8CIJ9|Q8CIJ9_MOUSE Atp13a2 protein OS=Mus musculus GN=Atp13a...    38   0.67 
tr|A2AA78|A2AA78_MOUSE ATPase type 13A2 OS=Mus musculus GN=Atp13...    37   1.1  
tr|Q5ZI64|Q5ZI64_CHICK Putative uncharacterized protein OS=Gallu...    35   5.6  
tr|B3PRV4|B3PRV4_RHIE6 Putative metalloprotease protein OS=Rhizo...    34   7.4  
tr|B8CBD2|B8CBD2_THAPS Predicted protein OS=Thalassiosira pseudo...    34   7.4  

>tr|Q8CIJ9|Q8CIJ9_MOUSE Atp13a2 protein OS=Mus musculus GN=Atp13a2
           PE=2 SV=1
          Length = 650

 Score = 37.7 bits (86), Expect = 0.67
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = +3

Query: 216 GRRRSWSPTEETCASASLRE*KRICSVIHCGIFQIASHPLNLRMALNLTTLHSPSSPSVS 395
           G+R  W  T++     SL +  R C  +HC     +S  L+L+      T++ P+  S+ 
Sbjct: 157 GQRYVWMETQQAFCQVSLLDHSRTCDDVHC-----SSSGLSLQDQATRKTIYGPNVISIP 211

Query: 396 APQKLSILA-SALNGCQPNYKPSIRASLYYPFEPYSISL 509
               L +LA  ALN              YY F+ +SI+L
Sbjct: 212 VKSYLQLLADEALNP-------------YYGFQAFSIAL 237


>tr|A2AA78|A2AA78_MOUSE ATPase type 13A2 OS=Mus musculus GN=Atp13a2
           PE=3 SV=1
          Length = 1169

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = +3

Query: 216 GRRRSWSPTEETCASASLRE*KRICSVIHCGIFQIASHPLNLRMALNLTTLHSPSSPSVS 395
           G+R  W  T++     SL +  R C  +HC     +S  L+L+      T++ P+  S+ 
Sbjct: 165 GQRYVWMETQQAFCQVSLLDHGRTCDDVHC-----SSSGLSLQDQATRKTIYGPNVISIP 219

Query: 396 APQKLSILA-SALNGCQPNYKPSIRASLYYPFEPYSISL 509
               L +LA  ALN              YY F+ +SI+L
Sbjct: 220 VKSYLQLLADEALNP-------------YYGFQAFSIAL 245


>tr|Q5ZI64|Q5ZI64_CHICK Putative uncharacterized protein OS=Gallus
           gallus GN=RCJMB04_29p4 PE=2 SV=1
          Length = 716

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +3

Query: 414 ILASALNGCQPNYKPSIRASLYYPFEPYSISLVHLATFSKSTRIVEESSHSQRFRVSQSA 593
           +   AL+GC P Y  SI        E Y ++   +A + ++TR V  S     F VS + 
Sbjct: 451 LFEQALDGCPPKYAKSIFLQYAQLEEHYGMARRAMAVYERATRAVLPSERRAVFEVSIAR 510

Query: 594 SSTLY 608
           ++ LY
Sbjct: 511 AAELY 515


>tr|B3PRV4|B3PRV4_RHIE6 Putative metalloprotease protein
           OS=Rhizobium etli (strain CIAT 652) GN=RHECIAT_CH0004316
           PE=4 SV=1
          Length = 513

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 13/53 (24%)
 Frame = +3

Query: 354 NLTTLHSP--SSPSVSAPQK-------LSILASALNGCQ----PNYKPSIRAS 473
           +LTT  SP  SS ++SAP++       LS +A ALNGCQ     +Y+PSI  S
Sbjct: 8   SLTTWKSPALSSDAISAPRRFARRLMLLSAIAMALNGCQSLIEQSYQPSISPS 60


>tr|B8CBD2|B8CBD2_THAPS Predicted protein OS=Thalassiosira pseudonana
            CCMP1335 GN=THAPSDRAFT_24655 PE=4 SV=1
          Length = 1966

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 23/91 (25%), Positives = 43/91 (47%)
 Frame = +3

Query: 333  LNLRMALNLTTLHSPSSPSVSAPQKLSILASALNGCQPNYKPSIRASLYYPFEPYSISLV 512
            LN++    L +    S   +S  + L +L S +    P YK ++RASLYY    +++   
Sbjct: 1059 LNVQSTAALVSARVESIRQLSLARLLLVLGSPMKNQTPIYKGALRASLYYTALSWAVK-- 1116

Query: 513  HLATFSKSTRIVEESSHSQRFRVSQSASSTL 605
              ++ ++S  +++E    +R R      S L
Sbjct: 1117 QSSSSTRSMTVLDEQLFIERKRTECGLESAL 1147