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DK959283
Clone id TST39A01NGRL0004_E07
Library
Length 393
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_E07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCGGGCTTTTGCTCGCGGGCCCTTTTGACAGCGCATGGAGGAAGGAGAGTTCTCAGAGGC
ACGTGAAGATCTTGCCGCTTTGGAAAAGGACTATGAGGAGGTTGGAGCTGACTCCGCTGA
TGGTGATGATGTGGATCCTGAAGAGTATTGATGATGAAAGCTGCTTGCAATCATTATCTA
ACCTACGGATTATTAGTAGCTCAGGAGCCAGGGCAGTTATCTTTTTTTCTCTTTAAAATT
TCAAAGAAGGCCTCGCCGGGGCTTCTGTTTAAGCGGGGAGGGTATCAGTGTGCTTGGGTT
TGATGTATCTTTCTTAATTATAATCATACGGATTTGTGCTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P52273
Definition sp|P52273|TBA_BOMMO Tubulin alpha chain OS=Bombyx mori
Align length 49
Score (bit) 45.8
E-value 7.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959283|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_E07, 5'
         (342 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52273|TBA_BOMMO Tubulin alpha chain OS=Bombyx mori PE=2 SV=1       46   7e-05
sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain OS=Gossypium hirsutum...    46   7e-05
sp|P22275|TBA3_MAIZE Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 ...    46   7e-05
sp|P06605|TBA3_DROME Tubulin alpha-3 chain OS=Drosophila melanog...    46   7e-05
sp|P06603|TBA1_DROME Tubulin alpha-1 chain OS=Drosophila melanog...    46   7e-05
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific OS=Onc...    45   9e-05
sp|P49742|TBAB_SCHCO Tubulin alpha-1B chain OS=Schizophyllum com...    45   9e-05
sp|P29511|TBA6_ARATH Tubulin alpha-6 chain OS=Arabidopsis thalia...    45   9e-05
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain OS=Rattus norvegicus GN...    45   9e-05
sp|P05214|TBA3_MOUSE Tubulin alpha-3 chain OS=Mus musculus GN=Tu...    45   9e-05
sp|Q32KN8|TBA3_BOVIN Tubulin alpha-3 chain OS=Bos taurus GN=TUBA...    45   9e-05
sp|Q13748|TBA3C_HUMAN Tubulin alpha-3C/D chain OS=Homo sapiens G...    45   9e-05
sp|P29510|TBA2_ARATH Tubulin alpha-2/alpha-4 chain OS=Arabidopsi...    45   9e-05
sp|Q9ZRB7|TBA_WHEAT Tubulin alpha chain OS=Triticum aestivum GN=...    45   1e-04
sp|Q27352|TBA_TRYCR Tubulin alpha chain OS=Trypanosoma cruzi PE=...    45   1e-04
sp|P04106|TBA_TRYBR Tubulin alpha chain OS=Trypanosoma brucei rh...    45   1e-04
sp|P10873|TBA_TOXGO Tubulin alpha chain OS=Toxoplasma gondii PE=...    45   1e-04
sp|P41351|TBA_TETTH Tubulin alpha chain OS=Tetrahymena thermophi...    45   1e-04
sp|P10872|TBA_TETPY Tubulin alpha chain OS=Tetrahymena pyriformi...    45   1e-04
sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA...    45   1e-04
sp|P12543|TBA_PLAYO Tubulin alpha chain OS=Plasmodium yoelii yoe...    45   1e-04
sp|P14642|TBA_PLAFK Tubulin alpha chain OS=Plasmodium falciparum...    45   1e-04
sp|P28287|TBA_OXYGR Tubulin alpha chain OS=Oxytricha granulifera...    45   1e-04
sp|P24635|TBA_OCTVU Tubulin alpha chain (Fragment) OS=Octopus vu...    45   1e-04
sp|Q06331|TBA_OCTDO Tubulin alpha chain OS=Octopus dofleini PE=2...    45   1e-04
sp|Q71G51|TBA_NEOCA Tubulin alpha chain OS=Neospora caninum GN=T...    45   1e-04
sp|P02553|TBA_LYTPI Tubulin alpha chain (Fragment) OS=Lytechinus...    45   1e-04
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain OS=Lepidoglyphus destruc...    45   1e-04
sp|P50719|TBA_HAECO Tubulin alpha chain OS=Haemonchus contortus ...    45   1e-04
sp|Q9C413|TBA_GLOLA Tubulin alpha chain OS=Glomerella lagenarium...    45   1e-04

>sp|P52273|TBA_BOMMO Tubulin alpha chain OS=Bombyx mori PE=2 SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSAEGEGEGAEEY 450


>sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain OS=Gossypium hirsutum
           PE=2 SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGDEGDEEEY 450


>sp|P22275|TBA3_MAIZE Tubulin alpha-3 chain OS=Zea mays GN=TUBA3
           PE=2 SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVAAEGGSDDGDEEEEY 450


>sp|P06605|TBA3_DROME Tubulin alpha-3 chain OS=Drosophila
           melanogaster GN=alphaTub84D PE=1 SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEEY 450


>sp|P06603|TBA1_DROME Tubulin alpha-1 chain OS=Drosophila
           melanogaster GN=alphaTub84B PE=2 SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEEY 450


>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
           OS=Oncorhynchus mykiss PE=2 SV=1
          Length = 450

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEGEAEEGEEY 450


>sp|P49742|TBAB_SCHCO Tubulin alpha-1B chain OS=Schizophyllum
           commune GN=TUB-1B PE=3 SV=1
          Length = 446

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 23/31 (74%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDY 94
           RAF      + MEEGEFSEAREDLAALEKDY
Sbjct: 400 RAFVHWYVGEAMEEGEFSEAREDLAALEKDY 430


>sp|P29511|TBA6_ARATH Tubulin alpha-6 chain OS=Arabidopsis thaliana
           GN=TUBA6 PE=2 SV=1
          Length = 450

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450


>sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain OS=Rattus norvegicus
           GN=Tuba3a PE=2 SV=1
          Length = 450

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEAEAEEGEEY 450


>sp|P05214|TBA3_MOUSE Tubulin alpha-3 chain OS=Mus musculus
           GN=Tuba3a PE=1 SV=1
          Length = 450

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEAEAEEGEEY 450
tr_hit_id O01943
Definition tr|O01943|O01943_GECLA Alpha-3-tubulin (Fragment) OS=Gecarcinus lateralis
Align length 49
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959283|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_E07, 5'
         (342 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O01943|O01943_GECLA Alpha-3-tubulin (Fragment) OS=Gecarcinus ...    47   5e-04
tr|A1C2D1|A1C2D1_9EUKA Alpha-tubulin (Fragment) OS=Oxymonadida e...    47   6e-04
tr|Q9SQ72|Q9SQ72_GOSHI Alpha-tubulin (Fragment) OS=Gossypium hir...    46   0.001
tr|Q65C79|Q65C79_SETVI Alpha tubulin OS=Setaria viridis GN=tua1 ...    46   0.001
tr|Q38JI1|Q38JI1_SOLTU Putative uncharacterized protein OS=Solan...    46   0.001
tr|B8A052|B8A052_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.001
tr|A9PL19|A9PL19_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU...    46   0.001
tr|Q964U9|Q964U9_CHITE Alpha tubulin OS=Chironomus tentans PE=2 ...    46   0.001
tr|Q7YZZ4|Q7YZZ4_OIKDI Putative alpha-tubulin OS=Oikopleura dioi...    46   0.001
tr|Q7YZZ3|Q7YZZ3_OIKDI Putative alpha-tubulin OS=Oikopleura dioi...    46   0.001
tr|Q7YZZ1|Q7YZZ1_OIKDI Putative alpha-tubulin OS=Oikopleura dioi...    46   0.001
tr|Q7PSI5|Q7PSI5_ANOGA AGAP010971-PA (Fragment) OS=Anopheles gam...    46   0.001
tr|Q6QA77|Q6QA77_9HEMI Alpha 2-tubulin OS=Laodelphax striatellus...    46   0.001
tr|Q294S5|Q294S5_DROPS GA15128 OS=Drosophila pseudoobscura pseud...    46   0.001
tr|Q1HR53|Q1HR53_AEDAE Alpha tubulin (Tubulin alpha chain) OS=Ae...    46   0.001
tr|Q16JS3|Q16JS3_AEDAE Tubulin alpha chain OS=Aedes aegypti GN=A...    46   0.001
tr|B4QZP1|B4QZP1_DROSI GD19940 OS=Drosophila simulans GN=GD19940...    46   0.001
tr|B4QYZ8|B4QYZ8_DROSI GD19909 OS=Drosophila simulans GN=GD19909...    46   0.001
tr|B4PS19|B4PS19_DROYA AlphaTub84B OS=Drosophila yakuba GN=Dyak\...    46   0.001
tr|B4PRG7|B4PRG7_DROYA GE24934 OS=Drosophila yakuba GN=GE24934 P...    46   0.001
tr|B4NKL9|B4NKL9_DROWI GK12743 OS=Drosophila willistoni GN=GK127...    46   0.001
tr|B4LZC9|B4LZC9_DROVI GJ24568 OS=Drosophila virilis GN=GJ24568 ...    46   0.001
tr|B4KDS3|B4KDS3_DROMO GI23057 OS=Drosophila mojavensis GN=GI230...    46   0.001
tr|B4JHW4|B4JHW4_DROGR GH19001 OS=Drosophila grimshawi GN=GH1900...    46   0.001
tr|B4I4V3|B4I4V3_DROSE GM10965 OS=Drosophila sechellia GN=GM1096...    46   0.001
tr|B4I4N6|B4I4N6_DROSE GM10931 OS=Drosophila sechellia GN=GM1093...    46   0.001
tr|B4GMN3|B4GMN3_DROPE GL12416 OS=Drosophila persimilis GN=GL124...    46   0.001
tr|B3P2S7|B3P2S7_DROER GG13808 OS=Drosophila erecta GN=GG13808 P...    46   0.001
tr|B3NYP4|B3NYP4_DROER GG14119 OS=Drosophila erecta GN=GG14119 P...    46   0.001
tr|B3LYC5|B3LYC5_DROAN GF17649 OS=Drosophila ananassae GN=GF1764...    46   0.001

>tr|O01943|O01943_GECLA Alpha-3-tubulin (Fragment) OS=Gecarcinus
           lateralis PE=2 SV=1
          Length = 443

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 26/49 (53%), Positives = 28/49 (57%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY              PEE+
Sbjct: 395 RAFVHWYVGEVMEEGEFSEAREDLAALEKDYEEVGLDSTDEAEEEPEEF 443


>tr|A1C2D1|A1C2D1_9EUKA Alpha-tubulin (Fragment) OS=Oxymonadida
           environmental sample GN=Atub PE=2 SV=1
          Length = 314

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDY 94
           RAFA     + MEEGEFSEAREDLAALEKDY
Sbjct: 265 RAFAHWYVGEGMEEGEFSEAREDLAALEKDY 295


>tr|Q9SQ72|Q9SQ72_GOSHI Alpha-tubulin (Fragment) OS=Gossypium
           hirsutum GN=TubA4 PE=2 SV=1
          Length = 127

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 79  RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGDEGDEEEY 127


>tr|Q65C79|Q65C79_SETVI Alpha tubulin OS=Setaria viridis GN=tua1
           PE=3 SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGGDDDEEDEEY 450


>tr|Q38JI1|Q38JI1_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGNEGEGEDDEEY 450


>tr|B8A052|B8A052_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 183

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 135 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVAAEGGSDDGDEEEEY 183


>tr|A9PL19|A9PL19_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TUA10
           PE=2 SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGDEGDEEEY 450


>tr|Q964U9|Q964U9_CHITE Alpha tubulin OS=Chironomus tentans PE=2
           SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGEGEGEGAEEY 450


>tr|Q7YZZ4|Q7YZZ4_OIKDI Putative alpha-tubulin OS=Oikopleura dioica
           GN=TUBAC PE=3 SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSIEAEDGEEEEY 450


>tr|Q7YZZ3|Q7YZZ3_OIKDI Putative alpha-tubulin OS=Oikopleura dioica
           GN=TUBAD PE=3 SV=1
          Length = 450

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   RAFARGPF*QRMEEGEFSEAREDLAALEKDYXXXXXXXXXXXXXXPEEY 148
           RAF      + MEEGEFSEAREDLAALEKDY               EEY
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSIEAEDGEEEEY 450