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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959334
Clone id TST39A01NGRL0004_G13
Library
Length 671
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_G13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATCATAGGCCACTTCTTATTAGGTGCCCTCTTCCTCTCCATCTCCCCGCCATAGCCTGCC
CTTCGTCCTTCCGCCGAAGCCTGCACTTTGGAGGTGTTTGCAGAGAGTGAGCATCTCGCA
TTTCTGGCCTTCGCAACAATTCTTCACCAGAATTTCCTCTCTGTCGGGTTTTCCTTCTTC
GTGCCAGCCACTTGCTCTTTGCTCTTTGCTTCAGACAGCTCTTTTCTCCCTGGAGGATGA
GTACCTGTCGCGAAATCAACTTATGGTTTCTCTATTCAGATATTCTTTGACACATTAGAA
CTTGGTATTACAAGGACGCCCAGTCTCTTTTCCCATGCTGCAGAAGTAGATTCATAAGCA
GTTTTTCCTCTCAGCTTGTTTTGCAAAGCTATATGGGAGGCCAAGGATTCAGTTTCCTGC
TGATGCACGGAATGGAAGTTTCTGCATCACCTTGCTCATCCACCTTCATTCCTTTGAAGG
GATTCCCTGTTACTCTGAAAATTGTGCCTGTGGCCTCGTACGCCCTCTTTAGAGGTGCTA
CGTTCTCCATACCTATTATCAGGTCCACAATCAAATTTTGGTCTGACGGGGAAGCCTAGA
GTTTGTGCAAGAAGAGGAATTCTGATCATCGTCAAGTATCCCTTCACTTTCATTTCAGGG
CGTTGCCCTTC
■■Homology search results ■■ -
sp_hit_id O33520
Definition sp|O33520|FMT_RICCK Methionyl-tRNA formyltransferase OS=Rickettsia canadensis (strain McKiel)
Align length 61
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959334|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_G13, 5'
         (671 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O33520|FMT_RICCK Methionyl-tRNA formyltransferase OS=Ricketts...    33   1.4  
sp|A0EQL2|SHBG_CROCR Sex hormone-binding globulin OS=Crocuta cro...    32   2.3  
sp|Q7MM14|SYM_VIBVY Methionyl-tRNA synthetase OS=Vibrio vulnific...    32   3.0  
sp|Q8D8F2|SYM_VIBVU Methionyl-tRNA synthetase OS=Vibrio vulnific...    32   3.0  
sp|Q9KT69|SYM_VIBCH Methionyl-tRNA synthetase OS=Vibrio cholerae...    32   3.0  
sp|A5F2P8|SYM_VIBC3 Methionyl-tRNA synthetase OS=Vibrio cholerae...    32   3.0  
sp|Q87N07|SYM_VIBPA Methionyl-tRNA synthetase OS=Vibrio parahaem...    32   4.0  
sp|A7MZT3|SYM_VIBHB Methionyl-tRNA synthetase OS=Vibrio harveyi ...    32   4.0  
sp|Q8R4P4|TMC2_MOUSE Transmembrane channel-like protein 2 OS=Mus...    31   6.8  
sp|Q5E3Z7|SYM_VIBF1 Methionyl-tRNA synthetase OS=Vibrio fischeri...    31   6.8  
sp|Q90YI1|OCX32_CHICK Ovocalyxin-32 OS=Gallus gallus PE=1 SV=1         30   8.8  
sp|Q9R1M5|NALP5_MOUSE NACHT, LRR and PYD domains-containing prot...    30   8.8  
sp|P44763|MNMG_HAEIN tRNA uridine 5-carboxymethylaminomethyl mod...    30   8.8  
sp|A5UHB8|MNMG_HAEIG tRNA uridine 5-carboxymethylaminomethyl mod...    30   8.8  
sp|P25364|HCM1_YEAST Forkhead transcription factor HCM1 OS=Sacch...    30   8.8  

>sp|O33520|FMT_RICCK Methionyl-tRNA formyltransferase OS=Rickettsia
           canadensis (strain McKiel) GN=fmt PE=3 SV=2
          Length = 303

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 16/61 (26%), Positives = 35/61 (57%)
 Frame = -2

Query: 574 LIVDLIIGMENVAPLKRAYEATGTIFRVTGNPFKGMKVDEQGDAETSIPCISRKLNPWPP 395
           L+++ ++ ++N+ P+K++ +      ++T    K   ++ Q D+  SI C  R +NPWP 
Sbjct: 174 LLINTLVNIDNIVPIKQSSDGITYAHKLTKQEGK---INWQ-DSAYSIDCKIRGMNPWPG 229

Query: 394 I 392
           +
Sbjct: 230 V 230


>sp|A0EQL2|SHBG_CROCR Sex hormone-binding globulin OS=Crocuta
           crocuta GN=SHBG PE=2 SV=1
          Length = 393

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 68  LPPKPALWRCLQRVSISHFWPSQQFFTRISSLSGFPSSC----QPLALCSLLQTALFSLE 235
           LP  PAL  C++R S    W   Q  T +S+LSG P SC    QP +       A FSL+
Sbjct: 174 LPLVPALDGCVRRGS----WLDHQAQTSVSALSGSPRSCGVESQPGSFFPPGAHAEFSLQ 229

Query: 236 D 238
           D
Sbjct: 230 D 230


>sp|Q7MM14|SYM_VIBVY Methionyl-tRNA synthetase OS=Vibrio vulnificus
           (strain YJ016) GN=metG PE=3 SV=1
          Length = 690

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 440 NFHSVHQQETESLASHIALQNKLRG 366
           N+HS H  E   LASHI LQ K  G
Sbjct: 99  NYHSTHSDENRELASHIYLQLKKNG 123


>sp|Q8D8F2|SYM_VIBVU Methionyl-tRNA synthetase OS=Vibrio vulnificus
           GN=metG PE=3 SV=2
          Length = 690

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 440 NFHSVHQQETESLASHIALQNKLRG 366
           N+HS H  E   LASHI LQ K  G
Sbjct: 99  NYHSTHSDENRELASHIYLQLKKNG 123


>sp|Q9KT69|SYM_VIBCH Methionyl-tRNA synthetase OS=Vibrio cholerae
           GN=metG PE=3 SV=2
          Length = 683

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 440 NFHSVHQQETESLASHIALQNKLRG 366
           N+HS H  E   LASHI LQ K  G
Sbjct: 94  NYHSTHSDENRELASHIYLQLKKNG 118


>sp|A5F2P8|SYM_VIBC3 Methionyl-tRNA synthetase OS=Vibrio cholerae
           serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
           GN=metG PE=3 SV=2
          Length = 683

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 440 NFHSVHQQETESLASHIALQNKLRG 366
           N+HS H  E   LASHI LQ K  G
Sbjct: 94  NYHSTHSDENRELASHIYLQLKKNG 118


>sp|Q87N07|SYM_VIBPA Methionyl-tRNA synthetase OS=Vibrio
           parahaemolyticus GN=metG PE=3 SV=2
          Length = 688

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 440 NFHSVHQQETESLASHIALQNKLRG 366
           N+HS H +E   LASHI L+ K  G
Sbjct: 99  NYHSTHSEENRELASHIYLELKKNG 123


>sp|A7MZT3|SYM_VIBHB Methionyl-tRNA synthetase OS=Vibrio harveyi
           (strain ATCC BAA-1116 / BB120) GN=metG PE=3 SV=2
          Length = 686

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 440 NFHSVHQQETESLASHIALQNKLRG 366
           N+HS H +E   LASHI L+ K  G
Sbjct: 94  NYHSTHSEENRELASHIYLELKKNG 118


>sp|Q8R4P4|TMC2_MOUSE Transmembrane channel-like protein 2 OS=Mus
           musculus GN=Tmc2 PE=2 SV=1
          Length = 888

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = -1

Query: 230 GRKELSEAKSKEQVAGTKKENPTERKFW*RIVAKARNARCSLSANTSKVQASAEGRRAGY 51
           GRK+      KEQ A  KKE    RK   + + K R+   SL ++ S   + +E   A  
Sbjct: 81  GRKKDRRTSLKEQRASPKKEREALRKEAGKQLRKPRST--SLGSSVSTGDSLSEEELAQI 138

Query: 50  GGEMERKR-----APNKKWPM 3
             ++E K+       NK WPM
Sbjct: 139 LEQVEEKKKLITTVRNKPWPM 159


>sp|Q5E3Z7|SYM_VIBF1 Methionyl-tRNA synthetase OS=Vibrio fischeri
           (strain ATCC 700601 / ES114) GN=metG PE=3 SV=1
          Length = 686

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 440 NFHSVHQQETESLASHIALQNKLRG 366
           N+HS H  E   LASHI L+ K  G
Sbjct: 94  NYHSTHSDENRELASHIYLELKKNG 118
tr_hit_id Q7T3X7
Definition tr|Q7T3X7|Q7T3X7_ONCMY Voltage-gated calcium channel subunit Cav2.2 variant I OS=Oncorhynchus mykiss
Align length 69
Score (bit) 39.3
E-value 0.23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959334|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_G13, 5'
         (671 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7T3X7|Q7T3X7_ONCMY Voltage-gated calcium channel subunit Cav...    39   0.23 
tr|Q7T3X6|Q7T3X6_ONCMY Voltage-gated calcium channel subunit Cav...    39   0.23 
tr|Q7T1M1|Q7T1M1_ONCMY Neuronal-type voltage-gated calcium chann...    39   0.23 
tr|A2EYC8|A2EYC8_TRIVA C2 domain containing protein OS=Trichomon...    36   2.5  
tr|A2ZUJ4|A2ZUJ4_ORYSJ Putative uncharacterized protein OS=Oryza...    35   3.3  
tr|Q7QE17|Q7QE17_ANOGA AGAP010697-PA (Fragment) OS=Anopheles gam...    35   4.3  
tr|A7UTY6|A7UTY6_ANOGA AGAP005940-PA OS=Anopheles gambiae GN=AGA...    35   5.6  
tr|A0C5P0|A0C5P0_PARTE Chromosome undetermined scaffold_150, who...    35   5.6  
tr|B0DPH8|B0DPH8_LACBS Predicted protein OS=Laccaria bicolor (st...    34   7.3  
tr|B1FKQ2|B1FKQ2_9BURK DEAD/DEAH box helicase domain protein OS=...    34   9.5  
tr|Q0DPJ1|Q0DPJ1_ORYSJ Os03g0686400 protein OS=Oryza sativa subs...    34   9.5  
tr|B8AF26|B8AF26_ORYSI Putative uncharacterized protein OS=Oryza...    34   9.5  
tr|B6KQ80|B6KQ80_TOXGO Putative uncharacterized protein OS=Toxop...    34   9.5  
tr|A0DI62|A0DI62_PARTE Chromosome undetermined scaffold_51, whol...    34   9.5  

>tr|Q7T3X7|Q7T3X7_ONCMY Voltage-gated calcium channel subunit Cav2.2
            variant I OS=Oncorhynchus mykiss PE=2 SV=1
          Length = 2378

 Score = 39.3 bits (90), Expect = 0.23
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
 Frame = -1

Query: 566  GPDNRYG--ERSTSKEGVRGHRHNFQSNRESLQRNEGG*AR*CRNFHSVHQQETESLASH 393
            GP ++ G  ER+ S+EG +GHRH+ Q+       N GG  R  R+ HS  +Q   +LA+ 
Sbjct: 911  GPRSKEGKVERNHSREGGQGHRHHHQAESPEEGVNGGGEGREDRHHHS-DRQGNGALATR 969

Query: 392  IALQNKLRG 366
              L+++ RG
Sbjct: 970  DRLESRGRG 978


>tr|Q7T3X6|Q7T3X6_ONCMY Voltage-gated calcium channel subunit Cav2.2
            variant II OS=Oncorhynchus mykiss PE=2 SV=1
          Length = 2367

 Score = 39.3 bits (90), Expect = 0.23
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
 Frame = -1

Query: 566  GPDNRYG--ERSTSKEGVRGHRHNFQSNRESLQRNEGG*AR*CRNFHSVHQQETESLASH 393
            GP ++ G  ER+ S+EG +GHRH+ Q+       N GG  R  R+ HS  +Q   +LA+ 
Sbjct: 900  GPRSKEGKVERNHSREGGQGHRHHHQAESPEEGVNGGGEGREDRHHHS-DRQGNGALATR 958

Query: 392  IALQNKLRG 366
              L+++ RG
Sbjct: 959  DRLESRGRG 967


>tr|Q7T1M1|Q7T1M1_ONCMY Neuronal-type voltage-gated calcium channel
            subunit Cav2.2 OS=Oncorhynchus mykiss PE=2 SV=1
          Length = 2365

 Score = 39.3 bits (90), Expect = 0.23
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
 Frame = -1

Query: 566  GPDNRYG--ERSTSKEGVRGHRHNFQSNRESLQRNEGG*AR*CRNFHSVHQQETESLASH 393
            GP ++ G  ER+ S+EG +GHRH+ Q+       N GG  R  R+ HS  +Q   +LA+ 
Sbjct: 900  GPRSKEGKVERNHSREGGQGHRHHHQAESPEEGVNGGGEGREDRHHHS-DRQGNGALATR 958

Query: 392  IALQNKLRG 366
              L+++ RG
Sbjct: 959  DRLESRGRG 967


>tr|A2EYC8|A2EYC8_TRIVA C2 domain containing protein OS=Trichomonas
            vaginalis G3 GN=TVAG_054530 PE=4 SV=1
          Length = 2028

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = -1

Query: 365  KTAYESTSAAWEKRLGVLVIPSSNVSKNI*IEKP*VDFATGTHPPGRKELSEAKSKEQVA 186
            K    S+S  +EK          N+  +I I K    F +G HPP +K   E K KE   
Sbjct: 1491 KVRIRSSSENYEKTSSFSSSDDENIGNSI-IGKMTGLFKSGEHPPEKKPEVEEKKKEATK 1549

Query: 185  GTKKENPTERK 153
            G KKE   ++K
Sbjct: 1550 GKKKEESKKKK 1560


>tr|A2ZUJ4|A2ZUJ4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002216 PE=4 SV=1
          Length = 431

 Score = 35.4 bits (80), Expect = 3.3
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = -1

Query: 188 AGTKK---ENPTERKFW*RIVAKARNARCSLS--ANTSKVQASAEGRRAGYGGEMERKRA 24
           AGTKK   E  +ERK    I A A      +S  AN +++ A+ EGRR+G+  +  R++ 
Sbjct: 247 AGTKKQKYEKISERKIATSIEAAAAGQSSGMSPIANNNRLSATEEGRRSGWSDDPTRRQV 306

Query: 23  P 21
           P
Sbjct: 307 P 307


>tr|Q7QE17|Q7QE17_ANOGA AGAP010697-PA (Fragment) OS=Anopheles gambiae
            GN=AGAP010697 PE=4 SV=4
          Length = 2062

 Score = 35.0 bits (79), Expect = 4.3
 Identities = 25/74 (33%), Positives = 31/74 (41%)
 Frame = -1

Query: 251  ATGTHPPGRKELSEAKSKEQVAGTKKENPTERKFW*RIVAKARNARCSLSANTSKVQASA 72
            A G  P G K  + AK KEQ+A  KK            V K    R     +T K  +  
Sbjct: 904  ADGAGPSGSKGAASAKRKEQLAAFKK------------VTKKGRERNYREKDTKKRSSRE 951

Query: 71   EGRRAGYGGEMERK 30
             GRR   GGE +R+
Sbjct: 952  RGRRGDDGGEPDRR 965


>tr|A7UTY6|A7UTY6_ANOGA AGAP005940-PA OS=Anopheles gambiae
           GN=AGAP005940 PE=4 SV=1
          Length = 879

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 2/177 (1%)
 Frame = -1

Query: 545 ERSTSKEGVRGHRHNFQSNRESLQRNEGG*AR*CRNFHSVHQQETESLASHIALQN-KLR 369
           E     E  +G R N ++ +      +GG         +  +++  +  + +A Q  K +
Sbjct: 169 EEEDDDEEEQGRRSNKRTKKTKASSAKGG---------AAGKKKVVAKKAAVAKQPPKKK 219

Query: 368 GKTAYESTSAAWEKRLGVLVIPSSNVSKNI*IEKP*VDFATGTHPPGRKELSEAK-SKEQ 192
            KTA  +T  A EK+ G          K    EK     ATG    G+K   + K  KE 
Sbjct: 220 AKTAATTTPTAAEKKEGA--------EKPTAAEKKKKKAATGASQDGKKSAGKKKEDKES 271

Query: 191 VAGTKKENPTERKFW*RIVAKARNARCSLSANTSKVQASAEGRRAGYGGEMERKRAP 21
            AG     P E++          N   + S+++S   +S+    +   G   R R+P
Sbjct: 272 AAGGASNGPEEKEDAANNSTNNANDTSTSSSSSSSSSSSSSEAGSKKDGRKSRSRSP 328


>tr|A0C5P0|A0C5P0_PARTE Chromosome undetermined scaffold_150, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00035236001 PE=4 SV=1
          Length = 469

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 289 QRISE*RNHKLISRQVLILQGEKSCLKQR--AKSKWLARRRKTRQRGNSGEELLRRPEMR 116
           QRI++ R  K++  Q L++QG +   KQR   K K L   +K  +     E +L   ++R
Sbjct: 222 QRIAKQRKDKVLENQQLLIQGNEVLKKQRELEKQKQLEEEKKIEEHAKKKERVLEIRKIR 281

Query: 115 D 113
           D
Sbjct: 282 D 282


>tr|B0DPH8|B0DPH8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_331444 PE=4 SV=1
          Length = 697

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +1

Query: 64  RPSAEACTLEVFAESE---HLAFLAFATILHQNFLSVGFSFFVPATCSLLFASDSSFLP 231
           R S +AC+ E   + +   H   LAF+    ++ L+V  SFF+  TC ++F+     LP
Sbjct: 137 RGSVQACSTEARGQQQELNHACHLAFSRRCLRSHLTVAPSFFLAPTCKIMFSVTLFLLP 195


>tr|B1FKQ2|B1FKQ2_9BURK DEAD/DEAH box helicase domain protein
           OS=Burkholderia ambifaria IOP40-10
           GN=BamIOP4010DRAFT_4613 PE=3 SV=1
          Length = 571

 Score = 33.9 bits (76), Expect = 9.5
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 629 MIRIPLLAQTLGF--PVRPKFDCGPDNRYGERSTSKEGVRGHRHNFQSNRESLQRNEGG 459
           +I+ PL  QTL    P R + D     R GERS  + G RG R     +R +  R  GG
Sbjct: 449 LIKRPLEVQTLALDKPSRHRHDERGGERAGERSGERAGERGGRRERDEHRGASARRSGG 507