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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959335
Clone id TST39A01NGRL0004_G14
Library
Length 655
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_G14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAAACACGGAAGCGAAGTTTCAGGCAAGCCAGTAATGGTGCACAGATGTCAGGGCGAGT
ACTTTAGACAGCTTCTCAAACCTATTACGTAGATTTGTCTGGGGGCTTTGATACGGTCCT
CAGCTGGTTACTACTACCTCAAATCATCTGCGGACATTTCTTAAAGTGGCGAGTACTTTC
TTTTCTGGGAAACCCCTTGGAGGTTATCATGAGGTGAGGTGCCAGTATCACTTCAGTATA
TCTTGTTCCTTGGCGTCTGCAAGGGCTCCCCCCGTCTGACTCGTTCTCTCGCAGACCTTC
GATCAACTGCATCTACAAACTGTGCTTTGCAGTCTAGTTAGGTCGCGTGTGCTGGGAGCT
CGCTGCTTTTTCTAATATTCTCCAATGAGCTCTCTTTCCAACTTGGAAAAGGGTGCCGTT
TGTGCCGTCAACCCTTTCGCGGGCGGATTGCAGTTTCAATCCTCTCAACCACATCTCAAA
CGGTTTATCATGTTCGACCACAGCAATGGTAAAGGTCGAGTTTTCTTTCATCCTGCTGTT
GCGCAGGACATGTTTGGTTCTGTGCAAAATCGCATTCTGGATAGTAAGGTATTGATTCCG
AACCAGGAAGTGAAAAGTGAGTGCTCAGCTTCTAGTTTTGCAGAATATAAACAGA
■■Homology search results ■■ -
sp_hit_id P44469
Definition sp|P44469|PBP2_HAEIN Penicillin-binding protein 2 OS=Haemophilus influenzae
Align length 60
Score (bit) 33.1
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959335|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_G14, 5'
         (655 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P44469|PBP2_HAEIN Penicillin-binding protein 2 OS=Haemophilus...    33   1.3  
sp|Q1CUH2|NADE_HELPH NH(3)-dependent NAD(+) synthetase OS=Helico...    32   3.8  
sp|Q3U487|HECD3_MOUSE Probable E3 ubiquitin-protein ligase HECTD...    31   6.5  
sp|P55068|PGCB_RAT Brevican core protein OS=Rattus norvegicus GN...    30   8.5  
sp|Q61361|PGCB_MOUSE Brevican core protein OS=Mus musculus GN=Bc...    30   8.5  
sp|O25096|NADE_HELPY NH(3)-dependent NAD(+) synthetase OS=Helico...    30   8.5  
sp|Q47HR4|LEUC_DECAR 3-isopropylmalate dehydratase large subunit...    30   8.5  

>sp|P44469|PBP2_HAEIN Penicillin-binding protein 2 OS=Haemophilus
           influenzae GN=mrdA PE=3 SV=1
          Length = 651

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
 Frame = -2

Query: 312 MQLIEGLRENESDGGSPCRRQGTRYTEVILAPHL--------MITSKGFPRKESTRHFKK 157
           ++ I GL +N+ +     RR+GTRYT ++L P+L         +    +P  E   +FK+
Sbjct: 113 LRYIVGLTDNDIENFKKERRRGTRYTPILLKPNLTEEQISRFAVNGYQYPSLEVRPYFKR 172


>sp|Q1CUH2|NADE_HELPH NH(3)-dependent NAD(+) synthetase
           OS=Helicobacter pylori (strain HPAG1) GN=nadE PE=3 SV=1
          Length = 260

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -2

Query: 324 HSL*MQLIEGLRENESDGGSPCRRQGTRYTEVILAPHLMITSKGFPRKESTRHFKKCPQM 145
           H+L M     + EN++D  S C++    YTE  +AP+  I    F     TR    C ++
Sbjct: 54  HALLMPSSASMPENKTDALSLCKKFSISYTEYSIAPYDAIFGSHFKDASLTRKGNFCARL 113


>sp|Q3U487|HECD3_MOUSE Probable E3 ubiquitin-protein ligase HECTD3
           OS=Mus musculus GN=Hectd3 PE=2 SV=2
          Length = 861

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 507 IAVVE-HDKPFEMWLRGLKLQSARERVDGTNGTLFQVGKRAHWRILE 370
           I +VE  D   ++ LRG+K++S+R+R  G N  LFQ      +  LE
Sbjct: 351 IRIVECRDDGIDVRLRGVKIKSSRQRELGLNADLFQPASLVRYPRLE 397


>sp|P55068|PGCB_RAT Brevican core protein OS=Rattus norvegicus
           GN=Bcan PE=1 SV=2
          Length = 883

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 199 GGYHEVRCQYHFSISCSLASAR-APPV*LVLSQTFDQLHLQTVLCSLVRSR 348
           G + +V C YH S +C +      PP  L L+Q F +  L+  + +++R R
Sbjct: 769 GQWSDVPCNYHLSYTCKMGLVSCGPPPQLPLAQIFGRPRLRYAVDTVLRYR 819


>sp|Q61361|PGCB_MOUSE Brevican core protein OS=Mus musculus GN=Bcan
           PE=1 SV=1
          Length = 883

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 199 GGYHEVRCQYHFSISCSLASAR-APPV*LVLSQTFDQLHLQTVLCSLVRSR 348
           G + +V C YH S +C +      PP  L L+Q F +  L+  + +++R R
Sbjct: 769 GQWSDVPCNYHLSYTCKMGLVSCGPPPQLPLAQIFGRPRLRYAVDTVLRYR 819


>sp|O25096|NADE_HELPY NH(3)-dependent NAD(+) synthetase
           OS=Helicobacter pylori GN=nadE PE=1 SV=1
          Length = 260

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -2

Query: 324 HSL*MQLIEGLRENESDGGSPCRRQGTRYTEVILAPHLMITSKGFPRKESTRHFKKCPQM 145
           H+L M     + EN++D  + C +    YTE  +AP+  I S  F     TR    C ++
Sbjct: 54  HALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARL 113


>sp|Q47HR4|LEUC_DECAR 3-isopropylmalate dehydratase large subunit
           OS=Dechloromonas aromatica (strain RCB) GN=leuC PE=3
           SV=1
          Length = 468

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
 Frame = -2

Query: 507 IAVVEHDKPFEMWLRGLKLQSARERVDGTNGTLFQVGKRAHWRILEKAASSQHTRPN*TA 328
           +A  +H+ P + W  G+K   +R++V+  +  + +VG  A++   ++     H       
Sbjct: 58  VATPDHNTPTDHWEEGIKDPISRQQVETLDANIREVGALAYFPFKDQRMGILHVVGPENG 117

Query: 327 KHSL*MQLIEGLRENESDGGSPCRRQGTRYTEV--ILAPHLMITSK 196
                M ++ G     + G   C   G   +EV  +LA   ++  +
Sbjct: 118 ATLPGMTVVCGDSHTSTHGAFACMAHGIGTSEVEHVLATQCLLQKR 163
tr_hit_id B4G182
Definition tr|B4G182|B4G182_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 39
Score (bit) 40.0
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959335|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_G14, 5'
         (655 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4G182|B4G182_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.13 
tr|Q5ZE55|Q5ZE55_ORYSJ cDNA clone:J023099H13, full insert sequen...    39   0.28 
tr|A2WST9|A2WST9_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.28 
tr|A7QQM0|A7QQM0_VITVI Chromosome undetermined scaffold_143, who...    38   0.62 
tr|A5AUF1|A5AUF1_VITVI Putative uncharacterized protein OS=Vitis...    38   0.62 
tr|B4FJ82|B4FJ82_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.1  
tr|Q7QI32|Q7QI32_ANOGA AGAP000934-PA (Fragment) OS=Anopheles gam...    36   1.8  
tr|Q75H21|Q75H21_ORYSJ Putative uncharacterized protein OSJNBa00...    35   3.1  
tr|Q10HE8|Q10HE8_ORYSJ Os03g0591300 protein OS=Oryza sativa subs...    35   3.1  
tr|A2XJ24|A2XJ24_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.1  
tr|A2XJ23|A2XJ23_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.1  
tr|A3W4D4|A3W4D4_9RHOB Hypothetical permease component of C4 dic...    35   5.3  
tr|B6UAA1|B6UAA1_MAIZE Putative uncharacterized protein OS=Zea m...    35   5.3  

>tr|B4G182|B4G182_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 270

 Score = 40.0 bits (92), Expect = 0.13
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 445 GLQFQSSQPHLKRFIMFDHSNGKGRVFFHPAVAQDMFGS 561
           GL+FQ+S    K +++FDH+  + RV FHP++A +   S
Sbjct: 75  GLEFQASDTCPKNYVIFDHTYDRSRVMFHPSLANNFASS 113


>tr|Q5ZE55|Q5ZE55_ORYSJ cDNA clone:J023099H13, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0688A04.7 PE=2 SV=1
          Length = 245

 Score = 38.9 bits (89), Expect = 0.28
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 442 GGLQFQSSQPHLKRFIMFDHSNGKGRVFFHPAVAQDMFGSVQN 570
           GG +FQ S+   + FI+FD ++ KGR+  HPA+   +  S  N
Sbjct: 59  GGFEFQPSKVCPRNFIIFDQTDDKGRIMCHPALVSKLNPSATN 101


>tr|A2WST9|A2WST9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02932 PE=4 SV=1
          Length = 245

 Score = 38.9 bits (89), Expect = 0.28
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 442 GGLQFQSSQPHLKRFIMFDHSNGKGRVFFHPAVAQDMFGSVQN 570
           GG +FQ S+   + FI+FD ++ KGR+  HPA+   +  S  N
Sbjct: 59  GGFEFQPSKVCPRNFIIFDQTDDKGRIMCHPALVSKLNPSATN 101


>tr|A7QQM0|A7QQM0_VITVI Chromosome undetermined scaffold_143, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00003416001 PE=4 SV=1
          Length = 244

 Score = 37.7 bits (86), Expect = 0.62
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +1

Query: 445 GLQFQSSQPHLKRFIMFDHSNGKGRVFFHPAVAQ 546
           G++FQ S    K FI+FD ++ + ++ FHPA+AQ
Sbjct: 50  GVEFQPSDVCPKNFIIFDQTDHRSQIMFHPAIAQ 83


>tr|A5AUF1|A5AUF1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036406 PE=4 SV=1
          Length = 289

 Score = 37.7 bits (86), Expect = 0.62
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +1

Query: 445 GLQFQSSQPHLKRFIMFDHSNGKGRVFFHPAVAQ 546
           G++FQ S    K FI+FD ++ + ++ FHPA+AQ
Sbjct: 95  GVEFQPSDVCPKNFIIFDQTDHRSQIMFHPAIAQ 128


>tr|B4FJ82|B4FJ82_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 264

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +1

Query: 445 GLQFQSSQPHLKRFIMFDHSNGKGRVFFHPAVAQDMFGS 561
           GL+FQ S    K +++FD +  + RV FHP++A + FGS
Sbjct: 70  GLEFQPSDTCPKNYVIFDQTYDRSRVMFHPSLANN-FGS 107


>tr|Q7QI32|Q7QI32_ANOGA AGAP000934-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP000934 PE=4 SV=4
          Length = 485

 Score = 36.2 bits (82), Expect = 1.8
 Identities = 23/71 (32%), Positives = 36/71 (50%)
 Frame = +1

Query: 229 HFSISCSLASARAPPV*LVLSQTFDQLHLQTVLCSLVRSRVLGARCFF*YSPMSSLSNLE 408
           HF  +C    AR P + + L  TFD+ HL   L   +    +  RCF+  +  ++++ L 
Sbjct: 114 HFGHACLSKVARIPVLYVFLQLTFDEEHLLAALSQELPDCTVALRCFYEVAYANAVARL- 172

Query: 409 KGAVCAVNPFA 441
           KGA+ A  P A
Sbjct: 173 KGALLARYPSA 183


>tr|Q75H21|Q75H21_ORYSJ Putative uncharacterized protein
           OSJNBa0027H16.21 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0027H16.21 PE=4 SV=1
          Length = 384

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 445 GLQFQSSQPHLKRFIMFDHSNGKGRVFFHPAVAQDMFGS 561
           G++FQ S    K +++FD +  + RV FHP++A ++  S
Sbjct: 70  GVEFQPSDTCPKNYVIFDQTYDRSRVMFHPSLANNLGNS 108


>tr|Q10HE8|Q10HE8_ORYSJ Os03g0591300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0591300 PE=2 SV=1
          Length = 263

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 445 GLQFQSSQPHLKRFIMFDHSNGKGRVFFHPAVAQDMFGS 561
           G++FQ S    K +++FD +  + RV FHP++A ++  S
Sbjct: 70  GVEFQPSDTCPKNYVIFDQTYDRSRVMFHPSLANNLGNS 108


>tr|A2XJ24|A2XJ24_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12439 PE=4 SV=1
          Length = 263

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 445 GLQFQSSQPHLKRFIMFDHSNGKGRVFFHPAVAQDMFGS 561
           G++FQ S    K +++FD +  + RV FHP++A ++  S
Sbjct: 70  GVEFQPSDTCPKNYVIFDQTYDRSRVMFHPSLANNLGNS 108