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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959359
Clone id TST39A01NGRL0004_H15
Library
Length 584
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_H15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGACTCTTTTCGTCCTGTTCTGCATCACTATGATGGACCAAAATTTCGTTTGCAGCTTTC
AGTTCCAGAGACTTTGGCTCTTCTGGACCTTTTCACGGAGGCTGGTATGGTGTGAGCTAG
CTGTATGTACAATGTTGGTGGTTTTGGAGCTAGAGAGCTTCCTGTTCGACTTCTTACCTG
GCCCATGCGGTGCGGTGCGGCAGATCGGATAATGTAATGCATTTGGAAAATCATGCTTGA
CCAGTGGTGATAAATATTGTGTTGTCGGTACTCCATACATGGGATGTTGTGTGCTTTCGA
ATGGGCCCAAATAAGTAGGACCCCTTGCCAAGCCTTCATAAGGAAAGCTTGTCCTGTTTT
GTGTAGGAGTAAAGTTTTCGGCTTGTTACGATAAGAATGTAATAAGCCCTGTATGCAAGC
GTGTGAAACAGAGGCTTGTCCTTAAAGGGCTGCCTTTGTTGGTGATTAAAGGATACTATG
GTTCTAGGTTTTCCCATGTACATCCCTCGAGGATCTGGCTGAAGGGAGTTTAAAGCCCCC
TTCATATAATTACATAAAAAGTTTGCTTAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P37707
Definition sp|P37707|B2_DAUCA B2 protein OS=Daucus carota
Align length 33
Score (bit) 61.6
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959359|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_H15, 5'
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P37707|B2_DAUCA B2 protein OS=Daucus carota PE=2 SV=1               62   3e-09
sp|Q7P1I1|UNG_CHRVO Uracil-DNA glycosylase OS=Chromobacterium vi...    33   1.3  
sp|Q90WM5|DMRT3_FUGRU Doublesex- and mab-3-related transcription...    32   2.2  
sp|O94242|SYDM_SCHPO Aspartyl-tRNA synthetase, mitochondrial OS=...    32   2.9  
sp|Q6XBJ3|ONEC2_MOUSE One cut domain family member 2 OS=Mus musc...    32   2.9  
sp|Q5AG31|MED14_CANAL Mediator of RNA polymerase II transcriptio...    31   3.8  
sp|Q5DU25|IQEC2_MOUSE IQ motif and SEC7 domain-containing protei...    31   4.9  
sp|Q5JU85|IQEC2_HUMAN IQ motif and SEC7 domain-containing protei...    31   4.9  
sp|Q8K9V2|ENGD_BUCAP GTP-dependent nucleic acid-binding protein ...    30   6.4  
sp|Q9WVR3|SHIP2_RAT Phosphatidylinositol-3,4,5-trisphosphate 5-p...    26   6.8  
sp|Q1KKX7|HXB3A_FUGRU Homeobox protein Hox-B3a OS=Fugu rubripes ...    30   8.4  
sp|P57288|ENGD_BUCAI GTP-dependent nucleic acid-binding protein ...    30   8.4  

>sp|P37707|B2_DAUCA B2 protein OS=Daucus carota PE=2 SV=1
          Length = 207

 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 24/33 (72%), Positives = 31/33 (93%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTE 100
           DSFRP+LHHYDGPKFRL+L++PE ++LLD+F E
Sbjct: 172 DSFRPILHHYDGPKFRLELNIPEAISLLDIFEE 204


>sp|Q7P1I1|UNG_CHRVO Uracil-DNA glycosylase OS=Chromobacterium
           violaceum GN=ung PE=3 SV=1
          Length = 238

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -2

Query: 255 IYHHWSSMIFQMHYIIRSAAPHRMGQVRSRTGSSLAPKPPTLYIQLAHTIPASVK 91
           I+  W +++ Q     R A   R+  ++ + G +L P PP ++  LA   PA VK
Sbjct: 11  IHPDWEAVLDQAAVAARLAEIDRLLVLQQQDGKTLFPPPPQVFNALAFAAPADVK 65


>sp|Q90WM5|DMRT3_FUGRU Doublesex- and mab-3-related transcription
           factor 3 OS=Fugu rubripes GN=dmrt3 PE=2 SV=2
          Length = 468

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
 Frame = -2

Query: 261 HNIYHHWSSMIFQMHYIIRSAA-------PHRMGQVRSRTGSSLAPKPP 136
           HN    W++M  Q  Y +RSAA       P R G    R+   L+P+PP
Sbjct: 377 HNDVTLWNTMALQQQYQLRSAAQYVSPFSPARSGGTVFRSSPILSPRPP 425


>sp|O94242|SYDM_SCHPO Aspartyl-tRNA synthetase, mitochondrial
           OS=Schizosaccharomyces pombe GN=msd1 PE=2 SV=1
          Length = 611

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 22/129 (17%)
 Frame = -1

Query: 328 ARGPTYLGPFE--STQHPM--YG---------VPTTQYLSPLVKHDFPNALHYPICRTAP 188
           A+G T   PF+  + QH +  YG         +P     S L K D   +    +     
Sbjct: 281 AKGITLAKPFQHITYQHAIDKYGSDKPDIRFELPLKNITSLLPKQDPLISTEILVYNDLS 340

Query: 187 HGPGKKSNRKLSSSKTTNIVHTASSHHTSLREKVQKSQSL---------WN*KLQTKFWS 35
           H      +RKL  +   N+V T+   H+ L+  V+K   L          N KLQ    S
Sbjct: 341 HSLSNAESRKLCEAVGENVVVTSIREHSQLQTWVKKLPQLRQLPIVAEELNQKLQIGINS 400

Query: 34  IIVMQNRTK 8
           I+ M NR K
Sbjct: 401 IVFMTNRPK 409


>sp|Q6XBJ3|ONEC2_MOUSE One cut domain family member 2 OS=Mus
           musculus GN=Onecut2 PE=2 SV=1
          Length = 486

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 213 IIRSAAPHRMGQVRSRTGSSLAPKPPTLYIQLAHTIPASVKRSRRAKVSGTES 55
           ++ S +PH  G  R   GS   P PPT + +L     A+   SR A V+   S
Sbjct: 42  LLASPSPHHAG--RGAAGSLRGPPPPTAHQELGTAAAAAAAASRSAMVTSMAS 92


>sp|Q5AG31|MED14_CANAL Mediator of RNA polymerase II transcription
           subunit 14 OS=Candida albicans GN=RGR1 PE=3 SV=2
          Length = 1270

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 405 LLHSYRNKPKTLLLHKTGQAFLMKA-WQGVLLIWAHSKAHNIPCMEYRQHNIYHHWSSMI 229
           LLH Y N  K  LL K  Q  L+ + W+G   I   +    I    + QH +  +W S I
Sbjct: 294 LLHKYSNSFKIYLLAKQFQTLLINSRWRGNFQINYQTNKSLIVINYWSQHYLSRNWKSFI 353


>sp|Q5DU25|IQEC2_MOUSE IQ motif and SEC7 domain-containing protein 2
            OS=Mus musculus GN=Iqsec2 PE=1 SV=2
          Length = 1478

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
 Frame = -1

Query: 379  ENFTPTQNRTSFPYEGLARGPTYLGPFESTQHPMYGVPTTQYLSPLVKHDF--------P 224
            ++F  + +    P  G A GP    P  S  HP +        SP+  H          P
Sbjct: 1376 KHFIFSHHPQMMPAAGAAGGPGSRPPGGSYSHPHHPQSPLSPHSPIPPHPSYPPLPPPSP 1435

Query: 223  NALHYPICRTAPHGP 179
            +  H P+  T+PHGP
Sbjct: 1436 HTPHSPLPPTSPHGP 1450


>sp|Q5JU85|IQEC2_HUMAN IQ motif and SEC7 domain-containing protein 2
            OS=Homo sapiens GN=IQSEC2 PE=2 SV=1
          Length = 1478

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
 Frame = -1

Query: 379  ENFTPTQNRTSFPYEGLARGPTYLGPFESTQHPMYGVPTTQYLSPLVKHDF--------P 224
            ++F  + +    P  G A GP    P  S  HP +        SP+  H          P
Sbjct: 1376 KHFIFSHHPQMMPAAGAAGGPGSRPPGGSYSHPHHPQSPLSPHSPIPPHPSYPPLPPPSP 1435

Query: 223  NALHYPICRTAPHGP 179
            +  H P+  T+PHGP
Sbjct: 1436 HTPHSPLPPTSPHGP 1450


>sp|Q8K9V2|ENGD_BUCAP GTP-dependent nucleic acid-binding protein
           engD OS=Buchnera aphidicola subsp. Schizaphis graminum
           GN=engD PE=3 SV=3
          Length = 362

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 169 TSYLAHAVRCGRSDNVMHLENHA*PVV-INIVLSVL 273
           T  +AH VRC + DNV H+ N   P + ++I+ S L
Sbjct: 97  THAIAHVVRCFKDDNVSHIYNQLQPKIDVDIINSEL 132


>sp|Q9WVR3|SHIP2_RAT Phosphatidylinositol-3,4,5-trisphosphate
            5-phosphatase 2 OS=Rattus norvegicus GN=Inppl1 PE=1 SV=1
          Length = 1257

 Score = 26.2 bits (56), Expect(2) = 6.8
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 216  YIIRSAAPHRMGQVRSRTGSSLAPKPPTLYIQLAHTIPA-SVKRSRRAKVSGTESCKRNF 40
            Y +    PH++  +   T  + AP PPT   ++A T+PA  + R R  +V    S   + 
Sbjct: 987  YYVLEGVPHQLLPLEP-TSFARAPIPPTTKNKVAITVPAPQLGRHRTPRVGEGSSSDEDS 1045

Query: 39   G 37
            G
Sbjct: 1046 G 1046



 Score = 21.6 bits (44), Expect(2) = 6.8
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = -1

Query: 367  PTQNRTSFPYEGLARGPTYLGPFESTQHPMYGVPTTQYLSPLVKHD 230
            PT    S P   L   P    P      P   VP  + L+P +K +
Sbjct: 920  PTSTEASCPLSKLFEEPEKPPPTGRPPAPPRAVPREESLNPRLKSE 965
tr_hit_id A9NP04
Definition tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 33
Score (bit) 67.8
E-value 4.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959359|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_H15, 5'
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea...    68   4e-10
tr|B8LQZ7|B8LQZ7_PICSI Putative uncharacterized protein OS=Picea...    66   1e-09
tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medic...    66   2e-09
tr|A9T5I7|A9T5I7_PHYPA Predicted protein OS=Physcomitrella paten...    66   2e-09
tr|Q9LSC7|Q9LSC7_ARATH Similarity to unknown protein (AT3g27090/...    65   2e-09
tr|Q8LBT1|Q8LBT1_ARATH Gda-1, putative OS=Arabidopsis thaliana P...    65   2e-09
tr|Q8L6E9|Q8L6E9_PEA GDA2 protein OS=Pisum sativum GN=gda2 PE=2 ...    65   3e-09
tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solan...    64   4e-09
tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citru...    64   8e-09
tr|A7QU74|A7QU74_VITVI Chromosome chr2 scaffold_176, whole genom...    64   8e-09
tr|A7Q7R8|A7Q7R8_VITVI Chromosome chr18 scaffold_61, whole genom...    64   8e-09
tr|A5AK97|A5AK97_VITVI Putative uncharacterized protein OS=Vitis...    64   8e-09
tr|Q9FHX9|Q9FHX9_ARATH Arabidopsis thaliana genomic DNA, chromos...    63   1e-08
tr|Q9AYM6|Q9AYM6_VIGUN CPRD48 protein (Fragment) OS=Vigna unguic...    63   1e-08
tr|Q8RXN8|Q8RXN8_ARATH Putative uncharacterized protein At5g4205...    63   1e-08
tr|A9PHN9|A9PHN9_POPTR Putative uncharacterized protein OS=Popul...    63   1e-08
tr|Q5JZR1|Q5JZR1_SOYBN N-rich protein OS=Glycine max GN=nrp PE=2...    62   2e-08
tr|B6TDG4|B6TDG4_MAIZE Gda-1 OS=Zea mays PE=2 SV=1                     61   4e-08
tr|B4FUR5|B4FUR5_MAIZE Putative uncharacterized protein OS=Zea m...    61   4e-08
tr|B8A073|B8A073_MAIZE Putative uncharacterized protein OS=Zea m...    61   5e-08
tr|B6T8N2|B6T8N2_MAIZE Gda-1 OS=Zea mays PE=2 SV=1                     61   5e-08
tr|Q6L4U7|Q6L4U7_ORYSJ Os05g0498700 protein OS=Oryza sativa subs...    60   8e-08
tr|B8AZL0|B8AZL0_ORYSI Putative uncharacterized protein OS=Oryza...    60   8e-08
tr|B7ZYQ7|B7ZYQ7_MAIZE Putative uncharacterized protein OS=Zea m...    60   8e-08
tr|B6TMX1|B6TMX1_MAIZE N-rich protein OS=Zea mays PE=2 SV=1            60   8e-08
tr|B4F858|B4F858_MAIZE Putative uncharacterized protein OS=Zea m...    60   8e-08
tr|Q5TKG4|Q5TKG4_ORYSJ Os05g0594100 protein OS=Oryza sativa subs...    59   1e-07
tr|A6N0R0|A6N0R0_ORYSI N-rich protein (Fragment) OS=Oryza sativa...    59   1e-07
tr|A3B7F0|A3B7F0_ORYSJ Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|A2Y853|A2Y853_ORYSI Putative uncharacterized protein OS=Oryza...    59   1e-07

>tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 273

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTE 100
           D+FRP+LHHYDGPKFRLQLSVPETLALLDLF E
Sbjct: 238 DAFRPILHHYDGPKFRLQLSVPETLALLDLFEE 270


>tr|B8LQZ7|B8LQZ7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 282

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTEAGM 109
           D+FRPVLHHYDGPKFRLQLS+PETLAL+DL T+  M
Sbjct: 247 DAFRPVLHHYDGPKFRLQLSIPETLALMDLCTQNSM 282


>tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 302

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 30/37 (81%), Positives = 33/37 (89%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTEAGMV 112
           DSFRPVLHHYDGPKFRL+LSVPETL L+DL  +AG V
Sbjct: 265 DSFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSV 301


>tr|A9T5I7|A9T5I7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_191832 PE=4 SV=1
          Length = 177

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 30/35 (85%), Positives = 31/35 (88%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTEAG 106
           DSFRPVLHHYDGPKFRLQLSVPE + LLDLF E G
Sbjct: 141 DSFRPVLHHYDGPKFRLQLSVPEAVELLDLFEENG 175


>tr|Q9LSC7|Q9LSC7_ARATH Similarity to unknown protein
           (AT3g27090/MOJ10_18) OS=Arabidopsis thaliana
           GN=At3g27090 PE=2 SV=1
          Length = 296

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTEAG 106
           DSFRPVLHHYDGPKFRL+LSVPETL LLDL  +AG
Sbjct: 260 DSFRPVLHHYDGPKFRLELSVPETLDLLDLCEQAG 294


>tr|Q8LBT1|Q8LBT1_ARATH Gda-1, putative OS=Arabidopsis thaliana PE=2
           SV=1
          Length = 296

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTEAG 106
           DSFRPVLHHYDGPKFRL+LSVPETL LLDL  +AG
Sbjct: 260 DSFRPVLHHYDGPKFRLELSVPETLDLLDLCEQAG 294


>tr|Q8L6E9|Q8L6E9_PEA GDA2 protein OS=Pisum sativum GN=gda2 PE=2
           SV=1
          Length = 213

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 29/35 (82%), Positives = 32/35 (91%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTEAG 106
           DSFRPVLHHYDGPKFRL+LSVPETL L+DL  +AG
Sbjct: 176 DSFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAG 210


>tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 298

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTEAGM 109
           D+FRPVLHHYDGPKFRL+LSVPETL LLDL  +AG+
Sbjct: 263 DAFRPVLHHYDGPKFRLELSVPETLDLLDLCEKAGV 298


>tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citrus
           paradisi PE=2 SV=1
          Length = 305

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 28/35 (80%), Positives = 32/35 (91%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTEAG 106
           D+FRPVLHHYDGPKFRL+LSVPETL L+DL  +AG
Sbjct: 268 DAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAG 302


>tr|A7QU74|A7QU74_VITVI Chromosome chr2 scaffold_176, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006725001
           PE=4 SV=1
          Length = 94

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = +2

Query: 2   DSFRPVLHHYDGPKFRLQLSVPETLALLDLFTE 100
           DSFRPVLHHYDGPKFRL+L+VPE L+LLD+F E
Sbjct: 59  DSFRPVLHHYDGPKFRLELNVPEALSLLDIFNE 91