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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959371
Clone id TST39A01NGRL0004_I04
Library
Length 677
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_I04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAAGCTGTAGTCTCTCCCCCCCTCCCCCTGACTAGCACTTCGGCGGCTTGGACAGCTGAA
GCTTGTCACCTGCAGCAGATATGGCGCGCCTGTCCGTTGCGCTGCTTCTGCTCTTCGCAA
TGTGTGCCTTCATTGCTAGCCCTGCCCTTGCGCGCAGGTCTACTAGGAGGCTCAACAGCG
GCTACCCTAAGAAGGGCTCGTCTGACTCGTCGCCTTCCACAAGCTCTCCATACCCATCGG
GCGGGTCGCCCTCTTCTGGAAGCTCGCCCTCATCTGGAAGCTCTCCTTCTGGTAGCTCTC
CGTCATCATCCACACCATCCATCACTGTTCCGCCAGTGATCTCATCTCCTTCCCCAGTAA
CCATTCCCCCGGTGACGTCGACTCCTTCTGGTGGTTATGGAGGATATGGGTCTCGAAGCG
GCATGGGAACGTCAGGGTTCTTTGGACGCAACCCTGCCAGGATTCCAAAGATTCTGTCGC
TGGTGTCGACGATTGCAAAGCTGTTTGGCCCTCGGCTACTGAAGTTTTTTGCAGGGAGGA
AGCCACCTAGCATTCTGGGAGCTTTGAAGGATCAGAGCCCTATGCCGCTGTCGTCTTTGG
CACGGGAGGCGACGGCGTCACTCATCAATTCGTATGCGCACAAGGACTTTCCGCTCTCCA
CATCCCAAGTGGTCTCG
■■Homology search results ■■ -
sp_hit_id Q2SB47
Definition sp|Q2SB47|HMUV_HAHCH Hemin import ATP-binding protein hmuV OS=Hahella chejuensis (strain KCTC 2396)
Align length 54
Score (bit) 32.7
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959371|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_I04, 5'
         (677 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2SB47|HMUV_HAHCH Hemin import ATP-binding protein hmuV OS=Ha...    33   1.8  
sp|Q80W71|PKHA8_MOUSE Pleckstrin homology domain-containing fami...    32   4.0  
sp|Q96JA3|PKHA8_HUMAN Pleckstrin homology domain-containing fami...    32   4.0  
sp|Q5TG08|YV009_HUMAN Putative uncharacterized protein LOC388900...    30   9.0  

>sp|Q2SB47|HMUV_HAHCH Hemin import ATP-binding protein hmuV
           OS=Hahella chejuensis (strain KCTC 2396) GN=hmuV PE=3
           SV=1
          Length = 256

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 516 LLKFFAGRKPPSILGALKDQSPMPLSSLAR-EATASLINSYAHKDFPLSTSQVV 674
           LLK  AG  PPS    L D  P+   SL++     ++++   H DFP S  +VV
Sbjct: 43  LLKTLAGDLPPSHGHVLLDDEPISQFSLSQLSRRRAVLSQSVHLDFPFSAMEVV 96


>sp|Q80W71|PKHA8_MOUSE Pleckstrin homology domain-containing family
           A member 8 OS=Mus musculus GN=Plekha8 PE=2 SV=2
          Length = 519

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 465 ESWQGCVQRTLTFPCRFETHILHNHQKESTSPGEWLLGKEMRSLAE-Q*WMV 313
           ++W+GC        C  + H + N + +   PGE     + RS+AE Q W+V
Sbjct: 35  DAWKGCKGSIQMAVCEIQVHSVDNTRMDLIIPGEQYFYLKARSVAERQRWLV 86


>sp|Q96JA3|PKHA8_HUMAN Pleckstrin homology domain-containing family
           A member 8 OS=Homo sapiens GN=PLEKHA8 PE=1 SV=2
          Length = 519

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 465 ESWQGCVQRTLTFPCRFETHILHNHQKESTSPGEWLLGKEMRSLAE-Q*WMV 313
           ++W+GC        C  + H + N + +   PGE     + RS+AE Q W+V
Sbjct: 35  DAWKGCKGSIQMAVCEIQVHSVDNTRMDLIIPGEQYFYLKARSVAERQRWLV 86


>sp|Q5TG08|YV009_HUMAN Putative uncharacterized protein LOC388900
           OS=Homo sapiens PE=1 SV=2
          Length = 646

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 320 HHCSASDLISFPSNHSPGDV--DSFWWLW 400
           H CS  +L  F S+ SP  +  DSFWW++
Sbjct: 168 HFCSGRELEKFLSSSSPRAIWLDSFWWIF 196
tr_hit_id A7Q1T6
Definition tr|A7Q1T6|A7Q1T6_VITVI Chromosome chr7 scaffold_44, whole genome shotgun sequence OS=Vitis vinifera
Align length 80
Score (bit) 41.6
E-value 0.047
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959371|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_I04, 5'
         (677 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q1T6|A7Q1T6_VITVI Chromosome chr7 scaffold_44, whole genome...    42   0.047
tr|Q87QC3|Q87QC3_VIBPA Putative uncharacterized protein VP1226 O...    39   0.39 
tr|A6B4Q8|A6B4Q8_VIBPA ABC-type antimicrobial peptide transport ...    39   0.39 
tr|B6T5X0|B6T5X0_MAIZE Meiosis 5 OS=Zea mays PE=2 SV=1                 38   0.52 
tr|Q0JBQ6|Q0JBQ6_ORYSJ Os04g0517000 protein OS=Oryza sativa subs...    36   2.6  
tr|Q01J54|Q01J54_ORYSA OSIGBa0145M07.3 protein OS=Oryza sativa G...    36   2.6  
tr|A3AVK8|A3AVK8_ORYSJ Putative uncharacterized protein OS=Oryza...    36   2.6  
tr|A2XVJ3|A2XVJ3_ORYSI Putative uncharacterized protein OS=Oryza...    36   2.6  
tr|Q9S728|Q9S728_ARATH En/Spm-like transposon protein (At2g42840...    35   4.4  
tr|A2X2P5|A2X2P5_ORYSI Putative uncharacterized protein OS=Oryza...    35   5.7  
tr|A8T1W8|A8T1W8_9VIBR Putative uncharacterized protein OS=Vibri...    34   7.4  
tr|Q0JJP4|Q0JJP4_ORYSJ Os01g0726700 protein OS=Oryza sativa subs...    34   7.4  
tr|B8A8Z5|B8A8Z5_ORYSI Putative uncharacterized protein OS=Oryza...    34   7.4  
tr|A2ZXF5|A2ZXF5_ORYSJ Putative uncharacterized protein OS=Oryza...    34   7.4  

>tr|A7Q1T6|A7Q1T6_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028591001
           PE=4 SV=1
          Length = 153

 Score = 41.6 bits (96), Expect = 0.047
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +3

Query: 438 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQSPMP--LSSLAREA 611
           ++G      P+++   ST+AK+FG R  + F  R   ++L A      +      L ++ 
Sbjct: 47  YWGSRKEAWPRMVPQTSTVAKVFGSRASERF--RSDMTLLEATAQDESVENVFHGLLKQT 104

Query: 612 TASLINSYAHKDFPLSTSQV 671
           +A+LINSYA K FP S  +V
Sbjct: 105 SAALINSYARKGFPYSAWEV 124


>tr|Q87QC3|Q87QC3_VIBPA Putative uncharacterized protein VP1226
           OS=Vibrio parahaemolyticus GN=VP1226 PE=4 SV=1
          Length = 836

 Score = 38.5 bits (88), Expect = 0.39
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
 Frame = +2

Query: 332 ASDLISFPSNHSPG----------DVDSFWWLWRIWVSKRHGNVRVLWTQPCQDSKDSV 478
           A+D+  +P+N+S G          +V+S WW W   V   HG ++V+ T P +   DS+
Sbjct: 517 AADIYIYPTNNSAGRMSAWLQDQPEVESVWWRWEKDVPTEHGALQVVSTGPSEGELDSL 575


>tr|A6B4Q8|A6B4Q8_VIBPA ABC-type antimicrobial peptide transport
           system, permease component OS=Vibrio parahaemolyticus
           AQ3810 GN=A79_1929 PE=4 SV=1
          Length = 817

 Score = 38.5 bits (88), Expect = 0.39
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
 Frame = +2

Query: 332 ASDLISFPSNHSPG----------DVDSFWWLWRIWVSKRHGNVRVLWTQPCQDSKDSV 478
           A+D+  +P+N+S G          +V+S WW W   V   HG ++V+ T P +   DS+
Sbjct: 498 AADIYIYPTNNSAGRMSAWLQDQPEVESVWWRWEKDVPTEHGALQVVSTGPSEGELDSL 556


>tr|B6T5X0|B6T5X0_MAIZE Meiosis 5 OS=Zea mays PE=2 SV=1
          Length = 201

 Score = 38.1 bits (87), Expect = 0.52
 Identities = 22/78 (28%), Positives = 39/78 (50%)
 Frame = +3

Query: 438 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQSPMPLSSLAREATA 617
           ++  +P  I  ++  +  I K FG        G+K  ++  AL +     + +L RE +A
Sbjct: 96  YWKSHPDMIIAVVGSLGNIGKTFGAAC-SLLVGKKLENLHEALSNTRTDGVGALLREGSA 154

Query: 618 SLINSYAHKDFPLSTSQV 671
           + +NS  +K FP +T QV
Sbjct: 155 AFLNSIVNKKFPFTTQQV 172


>tr|Q0JBQ6|Q0JBQ6_ORYSJ Os04g0517000 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0517000 PE=4 SV=1
          Length = 156

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 438 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREA 611
           F+     + P I+   + ++K+FG R +  +  R          D   S    + L ++ 
Sbjct: 48  FWSSGAEQWPNIIPQEAAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQG 107

Query: 612 TASLINSYAHKDFPLSTSQV 671
           +A+L+N+YA K FPL + +V
Sbjct: 108 SAALLNAYARKGFPLDSWEV 127


>tr|Q01J54|Q01J54_ORYSA OSIGBa0145M07.3 protein OS=Oryza sativa
           GN=OSIGBa0145M07.3 PE=4 SV=1
          Length = 179

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 438 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREA 611
           F+     + P I+   + ++K+FG R +  +  R          D   S    + L ++ 
Sbjct: 71  FWSSGAEQWPNIIPQEAAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQG 130

Query: 612 TASLINSYAHKDFPLSTSQV 671
           +A+L+N+YA K FPL + +V
Sbjct: 131 SAALLNAYARKGFPLDSWEV 150


>tr|A3AVK8|A3AVK8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014830 PE=4 SV=1
          Length = 179

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 438 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREA 611
           F+     + P I+   + ++K+FG R +  +  R          D   S    + L ++ 
Sbjct: 71  FWSSGAEQWPNIIPQEAAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQG 130

Query: 612 TASLINSYAHKDFPLSTSQV 671
           +A+L+N+YA K FPL + +V
Sbjct: 131 SAALLNAYARKGFPLDSWEV 150


>tr|A2XVJ3|A2XVJ3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16649 PE=4 SV=1
          Length = 179

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 438 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREA 611
           F+     + P I+   + ++K+FG R +  +  R          D   S    + L ++ 
Sbjct: 71  FWSSGAEQWPNIIPQEAAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQG 130

Query: 612 TASLINSYAHKDFPLSTSQV 671
           +A+L+N+YA K FPL + +V
Sbjct: 131 SAALLNAYARKGFPLDSWEV 150


>tr|Q9S728|Q9S728_ARATH En/Spm-like transposon protein (At2g42840)
           (Protodermal factor 1) OS=Arabidopsis thaliana GN=PDF1
           PE=2 SV=1
          Length = 306

 Score = 35.0 bits (79), Expect = 4.4
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 438 FFGRNPARIPKILSLVSTIAKLFGP-RLLKFFAGRKPP-SILGALKDQSPMPLSSLAREA 611
           ++  +P  I  +L    T+   FG   +     G  P  ++L AL +    P+ +L RE 
Sbjct: 194 YWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTRSDPIGALYREG 253

Query: 612 TASLINSYAHKDFPLSTSQV 671
           TAS +NS  +  FP +T QV
Sbjct: 254 TASWLNSMVNHKFPFTTPQV 273


>tr|A2X2P5|A2X2P5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06457 PE=4 SV=1
          Length = 219

 Score = 34.7 bits (78), Expect = 5.7
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +3

Query: 438 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQSPMPLSSLAREATA 617
           ++  +P  I   +  +  I K  G        G+K  ++  AL +       +L RE  A
Sbjct: 114 YWKNHPDVIISAIGSLGDIGKTLGTAC-SLITGKKLENLHDALSNTGTDGTGALLREGAA 172

Query: 618 SLINSYAHKDFPLSTSQV 671
           + +NS  +K FP ST QV
Sbjct: 173 AYLNSIVNKKFPFSTQQV 190