DK959375 |
Clone id |
TST39A01NGRL0004_I08 |
Library |
TST39 |
Length |
679 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_I08. 5' end sequence. |
Accession |
DK959375 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL94Contig1 |
Sequence |
TGAGGATTCCACATCCCACTATCCCGCTTCGTCTTCCTCCTTTCTCGCTCTCTGAGCTTT TCGGCTATGGCGTCTTGTAGCTTCAGTCACTGCTCTATTTCTACCCTTGAAAATCAGCGT GTGCTTGCAAAGACCCCCTCTTCATCCGTATCTGCTGCTCCCACTTCGACTCGTGGATTA AGTTCTTCTGCCTCTTTCGCGCAGCTAAGCTTTCAGGAAGGAGTCTGCCTTCGAGGTGTT GCTTCTCGCAGAAGTGTGCACCTTCTTGTTCGTGCTGCTCGTGAGAAGTTTGAGCGCAAT AAGCCGCATGTGAACATTGGCACTATTGGCCATGTCGACCACGGGAAAACGACTCTCACT GCTGCCCTCACAATGGCTGCAGCGTCTGAGCTAGGGAGTGCTCCTAAAAGATATGATCAG ATTGATGCTGCCCCAGAGGAAAGAGCAAGAGGTATTACCATCAACACCGCAGTGGTCGAA TATGAGTCTCCCAACAGACACTATGCACACGTGGACTGCCCTGGACATGCTGACTATGTG AAGAACATGATAACTGGTGCAGCGCAAATGGATGGTGCCATCCTTGTCGTCTCTGGAGCA GATGGTGCCATGCCTCAGACGAAAGAGCACATTCTTTTGGCCAAACAGGTCGGTGTCCCT CACATTGTTGTTTTTCTTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46280 |
Definition |
sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max |
Align length |
137 |
Score (bit) |
225.0 |
E-value |
1.0e-58 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959375|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0004_I08, 5' (679 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 225 1e-58 sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nico... 224 3e-58 sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Ni... 224 3e-58 sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Ni... 224 3e-58 sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 222 1e-57 sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arab... 219 8e-57 sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum ... 219 1e-56 sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlo... 217 4e-56 sp|Q0P3M7|EFTU_OSTTA Elongation factor Tu, chloroplastic OS=Ostr... 215 2e-55 sp|Q1KVS9|EFTU_SCEOB Elongation factor Tu, chloroplastic OS=Scen... 214 3e-55 sp|Q9MUP0|EFTU_MESVI Elongation factor Tu, chloroplastic OS=Meso... 213 6e-55 sp|Q1LI13|EFTU_RALME Elongation factor Tu OS=Ralstonia metallidu... 212 1e-54 sp|Q46WC7|EFTU_RALEJ Elongation factor Tu OS=Ralstonia eutropha ... 212 1e-54 sp|Q0K5Z9|EFTU_RALEH Elongation factor Tu OS=Ralstonia eutropha ... 212 1e-54 sp|P42481|EFTU_THICU Elongation factor Tu OS=Thiobacillus cuprin... 211 2e-54 sp|Q8XGZ0|EFTU_RALSO Elongation factor Tu OS=Ralstonia solanacea... 211 3e-54 sp|P17746|EFTU_CHLRE Elongation factor Tu, chloroplastic OS=Chla... 210 5e-54 sp|Q06J54|EFTU_BIGNA Elongation factor Tu, chloroplastic OS=Bige... 210 5e-54 sp|Q20EU5|EFTU_OLTVI Elongation factor Tu, chloroplastic OS=Oltm... 210 6e-54 sp|P56292|EFTU_CHLVU Elongation factor Tu, chloroplastic OS=Chlo... 210 6e-54 sp|A4JAM5|EFTU_BURVG Elongation factor Tu OS=Burkholderia vietna... 210 6e-54 sp|Q2SU25|EFTU_BURTA Elongation factor Tu OS=Burkholderia thaila... 210 6e-54 sp|Q63PZ6|EFTU_BURPS Elongation factor Tu OS=Burkholderia pseudo... 210 6e-54 sp|A3NEI1|EFTU_BURP6 Elongation factor Tu OS=Burkholderia pseudo... 210 6e-54 sp|Q3JMP6|EFTU_BURP1 Elongation factor Tu OS=Burkholderia pseudo... 210 6e-54 sp|A3P0B5|EFTU_BURP0 Elongation factor Tu OS=Burkholderia pseudo... 210 6e-54 sp|A1V8A5|EFTU_BURMS Elongation factor Tu OS=Burkholderia mallei... 210 6e-54 sp|Q62GK3|EFTU_BURMA Elongation factor Tu OS=Burkholderia mallei... 210 6e-54 sp|A2S7F9|EFTU_BURM9 Elongation factor Tu OS=Burkholderia mallei... 210 6e-54 sp|A3MRT8|EFTU_BURM7 Elongation factor Tu OS=Burkholderia mallei... 210 6e-54
>sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1 Length = 479
Score = 225 bits (574), Expect = 1e-58 Identities = 113/137 (82%), Positives = 117/137 (85%) Frame = +1
Query: 268 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 447 VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+IDAAPEERA Sbjct: 69 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERA 128
Query: 448 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKE 627 RGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKE Sbjct: 129 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 188
Query: 628 HILLAKQVGVPHIVVFL 678 HILLAKQVGVP+IVVFL Sbjct: 189 HILLAKQVGVPNIVVFL 205
>sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1 Length = 478
Score = 224 bits (572), Expect = 3e-58 Identities = 113/146 (77%), Positives = 119/146 (81%) Frame = +1
Query: 241 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 420 A+ R VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+ Sbjct: 59 ATHRHRRFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE 118
Query: 421 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 600 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILV SGA Sbjct: 119 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSGA 178
Query: 601 DGAMPQTKEHILLAKQVGVPHIVVFL 678 DG MPQTKEHILLAKQVGVP++VVFL Sbjct: 179 DGPMPQTKEHILLAKQVGVPNMVVFL 204
>sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1 Length = 485
Score = 224 bits (572), Expect = 3e-58 Identities = 112/137 (81%), Positives = 117/137 (85%) Frame = +1
Query: 268 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 447 VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+IDAAPEERA Sbjct: 75 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERA 134
Query: 448 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKE 627 RGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKE Sbjct: 135 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 194
Query: 628 HILLAKQVGVPHIVVFL 678 HILLAKQVGVP++VVFL Sbjct: 195 HILLAKQVGVPNMVVFL 211
>sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2 Length = 478
Score = 224 bits (572), Expect = 3e-58 Identities = 113/146 (77%), Positives = 119/146 (81%) Frame = +1
Query: 241 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 420 A+ R VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+ Sbjct: 59 ATHRHRRFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE 118
Query: 421 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 600 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILV SGA Sbjct: 119 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSGA 178
Query: 601 DGAMPQTKEHILLAKQVGVPHIVVFL 678 DG MPQTKEHILLAKQVGVP++VVFL Sbjct: 179 DGPMPQTKEHILLAKQVGVPNMVVFL 204
>sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1 Length = 479
Score = 222 bits (566), Expect = 1e-57 Identities = 110/137 (80%), Positives = 117/137 (85%) Frame = +1
Query: 268 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 447 VRAAR KFER KPHVNIGTIGHVDHGK + SAPK+YD+IDAAPEERA Sbjct: 69 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERA 128
Query: 448 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKE 627 RGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKE Sbjct: 129 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 188
Query: 628 HILLAKQVGVPHIVVFL 678 HI+LAKQVGVP++VVFL Sbjct: 189 HIILAKQVGVPNMVVFL 205
>sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1 Length = 476
Score = 219 bits (559), Expect = 8e-57 Identities = 113/146 (77%), Positives = 119/146 (81%) Frame = +1
Query: 241 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 420 ++RRS VRAAR KFER KPHVNIGTIGHVDHGK S S K+YD+ Sbjct: 59 STRRS--FTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
Query: 421 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 600 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 601 DGAMPQTKEHILLAKQVGVPHIVVFL 678 DG MPQTKEHILLAKQVGVP +VVFL Sbjct: 177 DGPMPQTKEHILLAKQVGVPDMVVFL 202
>sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum sativum GN=tufA PE=2 SV=1 Length = 488
Score = 219 bits (557), Expect = 1e-56 Identities = 109/137 (79%), Positives = 114/137 (83%) Frame = +1
Query: 268 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 447 VRAAR KFER KPH+NIGTIGHVDHGK SAPK+YD+IDAAPEERA Sbjct: 78 VRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALACLGNSAPKKYDEIDAAPEERA 137
Query: 448 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKE 627 RGITINTA VEYE+ RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKE Sbjct: 138 RGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 197
Query: 628 HILLAKQVGVPHIVVFL 678 HILLAKQVGVP +VVFL Sbjct: 198 HILLAKQVGVPSVVVFL 214
>sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlorokybus atmophyticus GN=tufA PE=3 SV=1 Length = 410
Score = 217 bits (553), Expect = 4e-56 Identities = 107/134 (79%), Positives = 113/134 (84%) Frame = +1
Query: 277 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 456 AREKFER KPHVNIGTIGHVDHGK + G+ KRYD+IDAAPEERARGI Sbjct: 2 AREKFERKKPHVNIGTIGHVDHGKTTLTAAITMALAASTGAKGKRYDEIDAAPEERARGI 61
Query: 457 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKEHIL 636 TINTA VEYE+ RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKEHIL Sbjct: 62 TINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 121
Query: 637 LAKQVGVPHIVVFL 678 LAKQVGVP++VVFL Sbjct: 122 LAKQVGVPNVVVFL 135
>sp|Q0P3M7|EFTU_OSTTA Elongation factor Tu, chloroplastic OS=Ostreococcus tauri GN=tufA PE=3 SV=1 Length = 409
Score = 215 bits (547), Expect = 2e-55 Identities = 106/134 (79%), Positives = 114/134 (85%) Frame = +1
Query: 277 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 456 AREKFER KPHVNIGTIGHVDHGK + GSA K+YD+ID++PEE+ARGI Sbjct: 2 AREKFERTKPHVNIGTIGHVDHGKTTLTAAITMAMAARGGSAGKKYDEIDSSPEEKARGI 61
Query: 457 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKEHIL 636 TINTA VEYE+ RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKEHIL Sbjct: 62 TINTAHVEYETATRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 121
Query: 637 LAKQVGVPHIVVFL 678 LAKQVGVP+IVVFL Sbjct: 122 LAKQVGVPNIVVFL 135
>sp|Q1KVS9|EFTU_SCEOB Elongation factor Tu, chloroplastic OS=Scenedesmus obliquus GN=tufA PE=3 SV=1 Length = 419
Score = 214 bits (546), Expect = 3e-55 Identities = 105/134 (78%), Positives = 115/134 (85%) Frame = +1
Query: 277 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 456 AR KFER+KPHVNIGTIGHVDHGK + G+ K+YD+ID+APEE+ARGI Sbjct: 2 ARAKFERSKPHVNIGTIGHVDHGKTTLTAAITMALAALGGATGKKYDEIDSAPEEKARGI 61
Query: 457 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKEHIL 636 TINTA VEYE+PNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKEHIL Sbjct: 62 TINTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 121
Query: 637 LAKQVGVPHIVVFL 678 LAKQVGVP++VVFL Sbjct: 122 LAKQVGVPNMVVFL 135
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6TFK5 |
Definition |
tr|B6TFK5|B6TFK5_MAIZE Elongation factor Tu OS=Zea mays |
Align length |
146 |
Score (bit) |
229.0 |
E-value |
9.0e-59 |
Report |
|