DK959393 |
Clone id |
TST39A01NGRL0004_J03 |
Library |
TST39 |
Length |
654 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_J03. 5' end sequence. |
Accession |
DK959393 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL703Contig1 |
Sequence |
AGTCCTTCTGTCCTGCCGATCGCCATGGCGAAGGTGTTTCTTTCGATCGGATGGTGTCTG AAGGCGTCCAGATGTGTCCTTTTCTCAGGAATATTGGCGTCTCAACCAATTTCTCCTTCT CGTCTCTCTCGAGATTTCCTGCACCGGTGAGAGGAAATCATGGTCCCATATTTGAGGATG GCCCTAACTTTGATCTGGCTTTCAAGCTATTTCATGGCCAAAATGGGGTGGTTCCCTTGT CGCAGCACTCTCAATTGGGAGGTAAAAATGTTGAGGAACAAGCCTCTAGTATAAAATTCC ATCCTTTAGCAGCTTCTGCAGCAGCCATAAGCTTATCAGCACTAGGAGCATCCGGTCCAT TTGGCTTTGATGCGTTTATGTCAAAGAGATTACAGGCAAAGAAGAACAATAAACCTCAGA AAAAGGAGAAACAGTATGAGGAGGAGAAGAAACGACCAGCTTCTTCGGAGCATGAAGCTT GGAGTAATGACTGGCTGCAGACAGGAAATTGCCCAATTGCCAAATCTTTCAGAGCTGTAA GTGGTGTGCTTCCGCTGGTTGCCAAGGTTCTACAGCCGCCTCCTGGTTTAAAGGTGCGGT GCCCGCCTGCCATTGTTGCTGCTCGTGCAGCTCTTGCTCGAACAGCAGCTGTGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P01134 |
Definition |
sp|P01134|TGFA_RAT Protransforming growth factor alpha OS=Rattus norvegicus |
Align length |
32 |
Score (bit) |
32.3 |
E-value |
2.2 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PI77 |
Definition |
tr|A7PI77|A7PI77_VITVI Chromosome chr13 scaffold_17, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
183 |
Score (bit) |
176.0 |
E-value |
1.0e-42 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959393|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0004_J03, 5' (654 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PI77|A7PI77_VITVI Chromosome chr13 scaffold_17, whole genom... 176 1e-42 tr|A5BGJ2|A5BGJ2_VITVI Putative uncharacterized protein OS=Vitis... 176 1e-42 tr|A7QQ42|A7QQ42_VITVI Chromosome chr2 scaffold_140, whole genom... 169 2e-40 tr|Q9SW23|Q9SW23_ARATH Putative uncharacterized protein F13M23.1... 163 7e-39 tr|B7FIB6|B7FIB6_MEDTR Putative uncharacterized protein OS=Medic... 161 3e-38 tr|A5AQN7|A5AQN7_VITVI Putative uncharacterized protein OS=Vitis... 161 3e-38 tr|A9TXN3|A9TXN3_PHYPA Predicted protein (Fragment) OS=Physcomit... 158 2e-37 tr|A9RHT9|A9RHT9_PHYPA Predicted protein (Fragment) OS=Physcomit... 154 5e-36 tr|Q9FRM3|Q9FRM3_ORYSA Putative uncharacterized protein OSJNBa00... 153 8e-36 tr|Q7XBR1|Q7XBR1_ORYSJ Os10g0580900 protein OS=Oryza sativa subs... 153 8e-36 tr|A9RHU0|A9RHU0_PHYPA Predicted protein (Fragment) OS=Physcomit... 153 8e-36 tr|Q9FHJ5|Q9FHJ5_ARATH Genomic DNA, chromosome 5, P1 clone:MFC19... 153 1e-35 tr|Q949T0|Q949T0_ARATH Putative uncharacterized protein At5g4541... 153 1e-35 tr|B4FFV1|B4FFV1_MAIZE Putative uncharacterized protein OS=Zea m... 153 1e-35 tr|Q8L9B2|Q8L9B2_ARATH Putative uncharacterized protein OS=Arabi... 149 1e-34 tr|Q5VRL0|Q5VRL0_ORYSJ Putative uncharacterized protein OSJNBa00... 147 4e-34 tr|B8B7E8|B8B7E8_ORYSI Putative uncharacterized protein OS=Oryza... 147 4e-34 tr|B8B1M7|B8B1M7_ORYSI Putative uncharacterized protein OS=Oryza... 147 4e-34 tr|Q7XIM9|Q7XIM9_ORYSJ Os07g0159500 protein OS=Oryza sativa subs... 144 4e-33 tr|A3BGR4|A3BGR4_ORYSJ Putative uncharacterized protein OS=Oryza... 144 4e-33 tr|A3B7S6|A3B7S6_ORYSJ Putative uncharacterized protein OS=Oryza... 142 2e-32 tr|B6TF41|B6TF41_MAIZE Putative uncharacterized protein OS=Zea m... 136 1e-30 tr|B4F7U4|B4F7U4_MAIZE Putative uncharacterized protein OS=Zea m... 136 1e-30 tr|B8AVD3|B8AVD3_ORYSI Putative uncharacterized protein OS=Oryza... 99 2e-19 tr|Q0DF43|Q0DF43_ORYSJ Os06g0115800 protein (Fragment) OS=Oryza ... 82 3e-14 tr|A7Q4Z4|A7Q4Z4_VITVI Chromosome undetermined scaffold_51, whol... 58 4e-07 tr|A7PN65|A7PN65_VITVI Chromosome chr1 scaffold_22, whole genome... 51 5e-05 tr|A8SHV6|A8SHV6_9FIRM Putative uncharacterized protein OS=Faeca... 35 4.0 tr|A8S935|A8S935_9FIRM Putative uncharacterized protein OS=Faeca... 35 4.0 tr|Q5PPZ2|Q5PPZ2_XENLA LOC496037 protein OS=Xenopus laevis GN=tg... 34 6.8
>tr|A7PI77|A7PI77_VITVI Chromosome chr13 scaffold_17, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018226001 PE=4 SV=1 Length = 358
Score = 176 bits (445), Expect = 1e-42 Identities = 88/183 (48%), Positives = 112/183 (61%) Frame = +3
Query: 60 EGVQMCPFLRNIGVSTNFSFSSLSRFPAPVRGNHGPIFEDGPNFDLAFKLFHGQNGVVPL 239 + + CPFLRNI TNFSF+S FP PVRG GPIFEDGPNFD+AF++FHG++GVVPL Sbjct: 22 QDILRCPFLRNINEPTNFSFASPMAFPMPVRGAKGPIFEDGPNFDMAFRVFHGRDGVVPL 81
Query: 240 SQHSQLGGKNVEEQASSIKFHPXXXXXXXXXXXXXXXXXPFGFDAFMSKRLQAXXXXXXX 419 S L +N E + + +F+P PF FD+F +K Sbjct: 82 SGRVFLRSENFEPEQAPPQFNPLAAKAATISLSGFGLGGPFSFDSFSNK-----WKNQKR 136
Query: 420 XXXXXXXXXXXRPASSEHEAWSNDWLQTGNCPIAKSFRAVSGVLPLVAKVLQPPPGLKVR 599 + S+HEA SN+WL+TGNCPIAKS+RAVS V+P+VAK LQPPPG+K + Sbjct: 137 ESKSSKKEPSSQRGDSKHEAMSNEWLETGNCPIAKSYRAVSHVIPIVAKALQPPPGMKFK 196
Query: 600 CPP 608 CPP Sbjct: 197 CPP 199
>tr|A5BGJ2|A5BGJ2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005903 PE=4 SV=1 Length = 584
Score = 176 bits (445), Expect = 1e-42 Identities = 88/183 (48%), Positives = 112/183 (61%) Frame = +3
Query: 60 EGVQMCPFLRNIGVSTNFSFSSLSRFPAPVRGNHGPIFEDGPNFDLAFKLFHGQNGVVPL 239 + + CPFLRNI TNFSF+S FP PVRG GPIFEDGPNFD+AF++FHG++GVVPL Sbjct: 248 QDILRCPFLRNINEPTNFSFASPMAFPMPVRGAKGPIFEDGPNFDMAFRVFHGRDGVVPL 307
Query: 240 SQHSQLGGKNVEEQASSIKFHPXXXXXXXXXXXXXXXXXPFGFDAFMSKRLQAXXXXXXX 419 S L +N E + + +F+P PF FD+F +K Sbjct: 308 SGRVFLRSENFEPEQAPPQFNPLAAKAATISLSGFGLGGPFSFDSFSNK-----WKNQKR 362
Query: 420 XXXXXXXXXXXRPASSEHEAWSNDWLQTGNCPIAKSFRAVSGVLPLVAKVLQPPPGLKVR 599 + S+HEA SN+WL+TGNCPIAKS+RAVS V+P+VAK LQPPPG+K + Sbjct: 363 ESKSSKKEPSSQRGDSKHEAMSNEWLETGNCPIAKSYRAVSHVIPIVAKALQPPPGMKFK 422
Query: 600 CPP 608 CPP Sbjct: 423 CPP 425
>tr|A7QQ42|A7QQ42_VITVI Chromosome chr2 scaffold_140, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00003198001 PE=4 SV=1 Length = 353
Score = 169 bits (427), Expect = 2e-40 Identities = 90/183 (49%), Positives = 110/183 (60%) Frame = +3
Query: 60 EGVQMCPFLRNIGVSTNFSFSSLSRFPAPVRGNHGPIFEDGPNFDLAFKLFHGQNGVVPL 239 + +Q CPFLRNI T+FSF+S S F PVRG GPIFEDGPNFD+AFKLFHG++GVVPL Sbjct: 20 QDIQKCPFLRNINKPTSFSFTS-SNFSIPVRGARGPIFEDGPNFDMAFKLFHGKDGVVPL 78
Query: 240 SQHSQLGGKNVEEQASSIKFHPXXXXXXXXXXXXXXXXXPFGFDAFMSKRLQAXXXXXXX 419 S S +N+ + ++ F+P PF FD F K Sbjct: 79 SGRSSFHNENLVPEPVAL-FNPLAAKAATISLSAFGPGGPFSFDFFSEKWKNQKRKSESS 137
Query: 420 XXXXXXXXXXXRPASSEHEAWSNDWLQTGNCPIAKSFRAVSGVLPLVAKVLQPPPGLKVR 599 SS+HEA N+WL+TGNCPIAKS+RAVS VLPLV K LQPPPG+K++ Sbjct: 138 NKKQSSSKGGD---SSKHEAMGNEWLKTGNCPIAKSYRAVSHVLPLVTKALQPPPGMKLK 194
Query: 600 CPP 608 CPP Sbjct: 195 CPP 197
>tr|Q9SW23|Q9SW23_ARATH Putative uncharacterized protein F13M23.170 (Putative uncharacterized protein At4g25030) (At4g25030) (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=F13M23.170 PE=2 SV=1 Length = 344
Score = 163 bits (413), Expect = 7e-39 Identities = 87/177 (49%), Positives = 99/177 (55%) Frame = +3
Query: 75 CPFLRNIGVSTNFSFSSLSRFPAPVRGNHGPIFEDGPNFDLAFKLFHGQNGVVPLSQHSQ 254 CPFLRNI TN SFSS FP P R GPIFEDGPNFD AF+LFHGQ+GVVPLS ++ Sbjct: 19 CPFLRNINEPTNLSFSSSLPFPIPARAGKGPIFEDGPNFDTAFRLFHGQDGVVPLSDTAR 78
Query: 255 LGGKNVEEQASSIKFHPXXXXXXXXXXXXXXXXXPFGFDAFMSKRLQAXXXXXXXXXXXX 434 E Q FHP PFGFDAF Sbjct: 79 -----TEAQKPVPVFHPLAAKAATISLSSFGSGGPFGFDAFSD-----------MFKNQK 122
Query: 435 XXXXXXRPASSEHEAWSNDWLQTGNCPIAKSFRAVSGVLPLVAKVLQPPPGLKVRCP 605 + HEA ++WL+TGNCPIAKS+RAVSGV PLVAK+LQPPPG+K +CP Sbjct: 123 KKSDSSKNKGGNHEAMGDEWLKTGNCPIAKSYRAVSGVAPLVAKILQPPPGMKFKCP 179
>tr|B7FIB6|B7FIB6_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 355
Score = 161 bits (408), Expect = 3e-38 Identities = 92/192 (47%), Positives = 110/192 (57%), Gaps = 4/192 (2%) Frame = +3
Query: 42 FDRMVSE-GVQMCPFLRNIGVSTNFSFSSLSRFPAPVRGNHGPIFEDGPNFDLAFKLFHG 218 F R ++E + CPFLRNI TNFSF S FP P R GPIFEDGPNFDLAF+LFHG Sbjct: 4 FARDINEDSILRCPFLRNINEPTNFSFVSPLAFPMPARAAKGPIFEDGPNFDLAFRLFHG 63
Query: 219 QNGVVPLSQHSQLGGKNVEEQASSIKFHPXXXXXXXXXXXXXXXXXPFGFDAFMSKRLQA 398 +GVVPLS+ + V +A +F+P PFGFD+F K Sbjct: 64 SDGVVPLSERTFQCFDKVRPEAPKSQFNPLAAKAATISLSSFGFGGPFGFDSFHEK---- 119
Query: 399 XXXXXXXXXXXXXXXXXXRPAS---SEHEAWSNDWLQTGNCPIAKSFRAVSGVLPLVAKV 569 P+S S+HEA NDWLQ GNCPIAKS++AVS VLPLVAKV Sbjct: 120 -----WKNQNKKSKSSKKEPSSKDGSKHEA-GNDWLQNGNCPIAKSYQAVSKVLPLVAKV 173
Query: 570 LQPPPGLKVRCP 605 +QPP G+K +CP Sbjct: 174 IQPPAGMKYKCP 185
>tr|A5AQN7|A5AQN7_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038296 PE=4 SV=1 Length = 381
Score = 161 bits (408), Expect = 3e-38 Identities = 92/208 (44%), Positives = 114/208 (54%), Gaps = 25/208 (12%) Frame = +3
Query: 60 EGVQMCPFLRNIGVSTNFSFSSLSRFPAPVRGNHGPIFEDGPNFDLAFKLFHGQNGVVPL 239 + +Q CPFLRNI T+FSF+S S F PVRG GPIFEDGPNFD+AFKLFHG++GVVPL Sbjct: 20 QDIQKCPFLRNINKPTSFSFTS-SNFSIPVRGARGPIFEDGPNFDMAFKLFHGKDGVVPL 78
Query: 240 SQHSQLGGKNVEEQASSIKFHPXXXXXXXXXXXXXXXXXPFGFDAFMSK----------- 386 S S +N+ + ++ F+P PF FD F K Sbjct: 79 SGRSSFHNENLVPEPVAL-FNPLAAKAATISLSAFGPGGPFSFDFFSEKWKNQKRKSESS 137
Query: 387 -RLQAXXXXXXXXXXXXXXXXXXRPA-------------SSEHEAWSNDWLQTGNCPIAK 524 + Q+ A SS+HEA N+WL+TGNCPIAK Sbjct: 138 NKKQSSSKVMFGFRDINLTHSSQXQAPTYRMFISFQGGDSSKHEAMGNEWLKTGNCPIAK 197
Query: 525 SFRAVSGVLPLVAKVLQPPPGLKVRCPP 608 S+RAVS VLPLV K LQPPPG+K++CPP Sbjct: 198 SYRAVSHVLPLVTKALQPPPGMKLKCPP 225
>tr|A9TXN3|A9TXN3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_5113 PE=4 SV=1 Length = 290
Score = 158 bits (400), Expect = 2e-37 Identities = 90/190 (47%), Positives = 117/190 (61%), Gaps = 9/190 (4%) Frame = +3
Query: 66 VQMCPFLRNIGVSTNFSFSSLS-RFPAPVRGNHGPIFEDGPNFDLAFKLFHGQNGVVPLS 242 V++CPFLRNIGV+T+F+FS+L+ PAP R GPIFEDGP F+ +F+LFHG++GVVPL+ Sbjct: 1 VELCPFLRNIGVTTSFAFSNLNFPVPAPRRAGRGPIFEDGPGFENSFRLFHGKDGVVPLA 60
Query: 243 QHSQLGGKNVEE------QASSIKFHPXXXXXXXXXXXXXXXXXPFGFDAFMSKR-LQAX 401 + S G + E +AS++ FHP PFGFD FM+K+ ++ Sbjct: 61 RAS--GEQQSSEPLVNSTEASNLSFHPLSARAAAISLSPFGPAGPFGFDIFMAKQNVKKP 118
Query: 402 XXXXXXXXXXXXXXXXXRPASSEHEAWSNDWLQTGNCPIAKSFRAVSGVLPLVAKVL-QP 578 S HEA S++WL TG CPIAKSFRAVSGVLPLV+K+L Q Sbjct: 119 SKKQPKKEPQPDKEHKSSLESHMHEAMSSEWLATGQCPIAKSFRAVSGVLPLVSKLLPQL 178
Query: 579 PPGLKVRCPP 608 P G+K RCPP Sbjct: 179 PKGMKYRCPP 188
>tr|A9RHT9|A9RHT9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_51590 PE=4 SV=1 Length = 305
Score = 154 bits (389), Expect = 5e-36 Identities = 86/189 (45%), Positives = 111/189 (58%), Gaps = 8/189 (4%) Frame = +3
Query: 66 VQMCPFLRNIGVSTNFSFSSLS-RFPAPVRGNHGPIFEDGPNFDLAFKLFHGQNGVVPLS 242 V++CPFLRNIGV+T+F+FS+L PAP R GPIFEDGP F+ +F+LFHG++GVVPL Sbjct: 1 VELCPFLRNIGVTTSFAFSNLKFPVPAPTRAGRGPIFEDGPGFENSFRLFHGKDGVVPLK 60
Query: 243 QHSQLGGKNVEE-----QASSIKFHPXXXXXXXXXXXXXXXXXPFGFDAFMSKR-LQAXX 404 + S G +N A + FHP PFGFD FM+++ + Sbjct: 61 RAS--GEQNARSFTETLDAEDLSFHPLSARAATISLSSFGAGGPFGFDGFMARQNAKKPK 118
Query: 405 XXXXXXXXXXXXXXXXRPASSEHEAWSNDWLQTGNCPIAKSFRAVSGVLPLVAKVL-QPP 581 + S HEA ++WL TG CPIAKSFRAVSGVLPLV+K+L + P Sbjct: 119 EKKPKKETEPEKKRRSKLESHMHEAMGSEWLATGQCPIAKSFRAVSGVLPLVSKLLPKLP 178
Query: 582 PGLKVRCPP 608 G+K RCPP Sbjct: 179 QGMKYRCPP 187
>tr|Q9FRM3|Q9FRM3_ORYSA Putative uncharacterized protein OSJNBa0056G17.7 OS=Oryza sativa GN=OSJNBa0056G17.7 PE=4 SV=1 Length = 352
Score = 153 bits (387), Expect = 8e-36 Identities = 83/188 (44%), Positives = 109/188 (57%) Frame = +3
Query: 45 DRMVSEGVQMCPFLRNIGVSTNFSFSSLSRFPAPVRGNHGPIFEDGPNFDLAFKLFHGQN 224 D V G++ CPFLRNI T+FSFSS++ FP P RG+ GPIFEDGPNFD+AF++FHGQ+ Sbjct: 17 DNSVQHGIERCPFLRNINEPTSFSFSSVN-FPVPARGDKGPIFEDGPNFDMAFRVFHGQD 75
Query: 225 GVVPLSQHSQLGGKNVEEQASSIKFHPXXXXXXXXXXXXXXXXXPFGFDAFMSKRLQAXX 404 GVVPLS H + +F+P F F F +KR + Sbjct: 76 GVVPLS-HGSFERFEKPMPKPNPEFNPLAAKAATISLSAFGGF--FSFGDFSNKRNKKNS 132
Query: 405 XXXXXXXXXXXXXXXXRPASSEHEAWSNDWLQTGNCPIAKSFRAVSGVLPLVAKVLQPPP 584 + HEA SN+WL+ G CP+AKS+RA+SGV+PLVAK++ PP Sbjct: 133 NQKKPNNLPQNGG-----QPNNHEALSNEWLEMGQCPLAKSYRALSGVVPLVAKMMTPPA 187
Query: 585 GLKVRCPP 608 G+K+RCPP Sbjct: 188 GMKLRCPP 195
>tr|Q7XBR1|Q7XBR1_ORYSJ Os10g0580900 protein OS=Oryza sativa subsp. japonica GN=Os10g0580900 PE=2 SV=1 Length = 352
Score = 153 bits (387), Expect = 8e-36 Identities = 83/188 (44%), Positives = 109/188 (57%) Frame = +3
Query: 45 DRMVSEGVQMCPFLRNIGVSTNFSFSSLSRFPAPVRGNHGPIFEDGPNFDLAFKLFHGQN 224 D V G++ CPFLRNI T+FSFSS++ FP P RG+ GPIFEDGPNFD+AF++FHGQ+ Sbjct: 17 DNSVQHGIERCPFLRNINEPTSFSFSSVN-FPVPARGDKGPIFEDGPNFDMAFRVFHGQD 75
Query: 225 GVVPLSQHSQLGGKNVEEQASSIKFHPXXXXXXXXXXXXXXXXXPFGFDAFMSKRLQAXX 404 GVVPLS H + +F+P F F F +KR + Sbjct: 76 GVVPLS-HGSFERFEKPMPKPNPEFNPLAAKAATISLSAFGGF--FSFGDFSNKRNKKNS 132
Query: 405 XXXXXXXXXXXXXXXXRPASSEHEAWSNDWLQTGNCPIAKSFRAVSGVLPLVAKVLQPPP 584 + HEA SN+WL+ G CP+AKS+RA+SGV+PLVAK++ PP Sbjct: 133 NQKKPNNLPQNGG-----QPNNHEALSNEWLEMGQCPLAKSYRALSGVVPLVAKMMTPPA 187
Query: 585 GLKVRCPP 608 G+K+RCPP Sbjct: 188 GMKLRCPP 195
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