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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959406
Clone id TST39A01NGRL0004_J17
Library
Length 621
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_J17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCCAAGTCCCCCTTGTTCACCATCACCAGACGGTGCAAGCGGATTGGGCTCTCTCAGCCT
CCTAGCTCAACTGGCTTGCAACCTAGGGTTCTGTCAGCTAGTCTTATCTTCTCTTTCGGG
ATAGTCGGGCCTGCTGCTCGTTTGTCCTTTGAGTACTCAGAGGGTCTTAACCTTATCCGA
CATAGCAAACACTACCTTTGGAACGTATTTGGCCCTTCCTCCAATTGCGTAGAACCAAAC
CCTACAGTGCACTTGCAGAGTATCTGTCGACCCACAAAGTCCCCTGACATAACAAAGCGG
TTGTGGAAGGCCAACAAGCCGCCATGGCCTCTGCAGCTTCCATAGGCCTTACACATACAT
TTCAAGCCCTCTCTCTTGAAACAGGAAGCAGAAGAGGGTTGAAGCCTGCATCAGCAAACA
TGCTAACCCGGCTTTCATCATCTTTCTTGGGGGACTCCACACAAACCTTCATGGCTCCTT
GCTCTCTGGGACTTGGACAGCCCTCTCGCTCATTCCATGCAATGTGTGTAAGGATGGATT
CTCGCTTGTATGCGAGAGAGGACGAATGGAAGAGACCCGCAGTTGCACTTGCAGATTATG
CTGTCGCAGAGAGTGACCTTG
■■Homology search results ■■ -
sp_hit_id Q8GDY3
Definition sp|Q8GDY3|UPPS_HELMO Undecaprenyl pyrophosphate synthetase OS=Heliobacillus mobilis
Align length 36
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959406|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_J17, 5'
         (621 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8GDY3|UPPS_HELMO Undecaprenyl pyrophosphate synthetase OS=He...    33   1.2  
sp|Q8FYS6|LIVB1_BRUSU Leu/Ile/Val-binding protein homolog 1 OS=B...    33   1.6  
sp|Q8YJ23|LIVB1_BRUME Leu/Ile/Val-binding protein homolog 1 OS=B...    33   1.6  
sp|Q7G1L2|RAP26_ARATH Ethylene-responsive transcription factor R...    32   2.0  
sp|A8Z5Q4|MNMG_SULMW tRNA uridine 5-carboxymethylaminomethyl mod...    32   3.4  
sp|Q57BA1|LIVB2_BRUAB Leu/Ile/Val-binding protein homolog 2 OS=B...    32   3.5  
sp|Q2YLG0|LIVB2_BRUA2 Leu/Ile/Val-binding protein homolog 2 OS=B...    32   3.5  
sp|P14403|POLG_JAEVN Genome polyprotein (Fragment) OS=Japanese e...    30   7.7  
sp|P32886|POLG_JAEVJ Genome polyprotein OS=Japanese encephalitis...    30   7.7  
sp|P19110|POLG_JAEV5 Genome polyprotein OS=Japanese encephalitis...    30   7.7  
sp|P27395|POLG_JAEV1 Genome polyprotein OS=Japanese encephalitis...    30   7.7  

>sp|Q8GDY3|UPPS_HELMO Undecaprenyl pyrophosphate synthetase
           OS=Heliobacillus mobilis GN=uppS PE=3 SV=1
          Length = 260

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 204 RIWPFLQLRRTKPYSALAEYLSTHKVP*HNKAVVEG 311
           R+WPF Q + +    AL+E +  H++P H   +++G
Sbjct: 4   RLWPFGQTKTSADEQALSEQIDPHRIPKHIAIIMDG 39


>sp|Q8FYS6|LIVB1_BRUSU Leu/Ile/Val-binding protein homolog 1
           OS=Brucella suis GN=BR1785 PE=3 SV=1
          Length = 371

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
 Frame = -3

Query: 523 IAWNEREGCPSPREQGAMKVCVESPKK--DDESRVSMFADAGFNPLLLPVSRERA*NVCV 350
           I  NE      P  +G +      P+   D+   V  F DAGF P    +    A     
Sbjct: 250 IVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTLYSYAAVQSLA 309

Query: 349 R---------PMEAAEAMAACWPSTTALLCQGTLWVDRYSASAL*GLVLRNWRKG 212
           +         P E A+AM    P  T L   G L  D      L G V+  W KG
Sbjct: 310 QAAKAAGSNDPQEVAKAMKEKGPFKTVL---GDLSYDEKGDPKLPGYVMYKWEKG 361


>sp|Q8YJ23|LIVB1_BRUME Leu/Ile/Val-binding protein homolog 1
           OS=Brucella melitensis GN=BMEI0263 PE=3 SV=2
          Length = 371

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
 Frame = -3

Query: 523 IAWNEREGCPSPREQGAMKVCVESPKK--DDESRVSMFADAGFNPLLLPVSRERA*NVCV 350
           I  NE      P  +G +      P+   D+   V  F DAGF P    +    A     
Sbjct: 250 IVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTLYSYAAVQSLA 309

Query: 349 R---------PMEAAEAMAACWPSTTALLCQGTLWVDRYSASAL*GLVLRNWRKG 212
           +         P E A+AM    P  T L   G L  D      L G V+  W KG
Sbjct: 310 QAAKAAGSNDPQEVAKAMKEKGPFKTVL---GDLSYDEKGDPKLPGYVMYKWEKG 361


>sp|Q7G1L2|RAP26_ARATH Ethylene-responsive transcription factor
           RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2
          Length = 192

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 127 GPAARLSFEYSEGLNLIRHSKHYLWNVFGPSSNCVEPNPTVHLQSICRPTKSP 285
           G  A+L+F  + G   I+ + H+L N   PS   ++  PT+   S C   + P
Sbjct: 109 GSKAKLNFPENVGTQTIQRNSHFLQNSMQPSLTYIDQCPTLLSYSRCMEQQQP 161


>sp|A8Z5Q4|MNMG_SULMW tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme mnmG OS=Sulcia muelleri (strain
           GWSS) GN=mnmG PE=3 SV=1
          Length = 611

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 22  ITRRCKRIGLSQPPSSTGLQPRVLSASLIFSFGI--VGPAARLSFEYSEGLNLIRHSKHY 195
           +T + K+IG       TG  PR+   SL FS  I  +G      F Y   LN+++  K Y
Sbjct: 182 LTEKLKKIGFFSGRMKTGTSPRLDGRSLDFSKMIEQLGDFPIEPFSYLSNLNILKQKKCY 241

Query: 196 L 198
           +
Sbjct: 242 I 242


>sp|Q57BA1|LIVB2_BRUAB Leu/Ile/Val-binding protein homolog 2
           OS=Brucella abortus GN=BruAb1_1765 PE=3 SV=1
          Length = 371

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 32/116 (27%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
 Frame = -3

Query: 523 IAWNEREGCPSPREQGAMKVCVESPKK--DDESRVSMFADAGFNPLLLPVSRERA*NVCV 350
           I  NE      P  +G +      P+   D+   V  F DAGF P              V
Sbjct: 250 IVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTFYAYAGVQSLV 309

Query: 349 R---------PMEAAEAMAACWPSTTALLCQGTLWVDRYSASAL*GLVLRNWRKGQ 209
                     PME A AM    P  T L   G +  D     +L   V+  WRKG+
Sbjct: 310 NAANAAGSNDPMEVATAMKEKGPFKTVL---GDISFDAKGDPSLSPYVMFEWRKGE 362


>sp|Q2YLG0|LIVB2_BRUA2 Leu/Ile/Val-binding protein homolog 2
           OS=Brucella abortus (strain 2308) GN=BAB1_1792 PE=3 SV=2
          Length = 371

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 32/116 (27%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
 Frame = -3

Query: 523 IAWNEREGCPSPREQGAMKVCVESPKK--DDESRVSMFADAGFNPLLLPVSRERA*NVCV 350
           I  NE      P  +G +      P+   D+   V  F DAGF P              V
Sbjct: 250 IVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTFYAYAGVQSLV 309

Query: 349 R---------PMEAAEAMAACWPSTTALLCQGTLWVDRYSASAL*GLVLRNWRKGQ 209
                     PME A AM    P  T L   G +  D     +L   V+  WRKG+
Sbjct: 310 NAANAAGSNDPMEVATAMKEKGPFKTVL---GDISFDAKGDPSLSPYVMFEWRKGE 362


>sp|P14403|POLG_JAEVN Genome polyprotein (Fragment) OS=Japanese
           encephalitis virus (strain Nakayama) PE=3 SV=1
          Length = 1440

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 581 CGSLPFVLSRIQARIHPYTHCME*ARGLSKSQRARSHEGLCGV 453
           CGS  FV + ++A +  Y +  E  R L+K       EG+CGV
Sbjct: 737 CGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKEGVCGV 779


>sp|P32886|POLG_JAEVJ Genome polyprotein OS=Japanese encephalitis
           virus (strain Jaoars982) PE=3 SV=1
          Length = 3432

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 581 CGSLPFVLSRIQARIHPYTHCME*ARGLSKSQRARSHEGLCGV 453
           CGS  FV + ++A +  Y +  E  R L+K       EG+CGV
Sbjct: 809 CGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKEGVCGV 851


>sp|P19110|POLG_JAEV5 Genome polyprotein OS=Japanese encephalitis
           virus PE=3 SV=1
          Length = 3432

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 581 CGSLPFVLSRIQARIHPYTHCME*ARGLSKSQRARSHEGLCGV 453
           CGS  FV + ++A +  Y +  E  R L+K       EG+CGV
Sbjct: 809 CGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKEGVCGV 851
tr_hit_id B4MJJ1
Definition tr|B4MJJ1|B4MJJ1_DROWI GK20841 OS=Drosophila willistoni
Align length 79
Score (bit) 35.0
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959406|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_J17, 5'
         (621 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4MJJ1|B4MJJ1_DROWI GK20841 OS=Drosophila willistoni GN=GK208...    35   3.6  
tr|Q9RKM8|Q9RKM8_STRCO Probable tetR family transcriptional regu...    35   4.7  
tr|Q1YX35|Q1YX35_PHOPR Putative uncharacterized protein OS=Photo...    34   6.1  
tr|Q0UPE5|Q0UPE5_PHANO Putative uncharacterized protein OS=Phaeo...    34   6.2  
tr|Q57V06|Q57V06_9TRYP Putative uncharacterized protein OS=Trypa...    34   7.9  
tr|Q4D928|Q4D928_TRYCR Putative uncharacterized protein OS=Trypa...    34   7.9  

>tr|B4MJJ1|B4MJJ1_DROWI GK20841 OS=Drosophila willistoni GN=GK20841
           PE=4 SV=1
          Length = 522

 Score = 35.0 bits (79), Expect = 3.6
 Identities = 19/79 (24%), Positives = 37/79 (46%)
 Frame = +3

Query: 288 HNKAVVEGQQAAMASAASIGLTHTFQALSLETGSRRGLKPASANMLTRLSSSFLGDSTQT 467
           +N +     +   + +  +G+     ++SL TGS   L+ +S + L+ L+S+ +G +T  
Sbjct: 95  NNPSPTTTMRVVPSMSPQLGIDGRMSSVSLSTGSASALERSSTSSLSNLNSASVGTNTAV 154

Query: 468 FMAPCSLGLGQPSRSFHAM 524
               CS       R F +M
Sbjct: 155 LAKECSSQTSNGGRQFLSM 173


>tr|Q9RKM8|Q9RKM8_STRCO Probable tetR family transcriptional
           regulator OS=Streptomyces coelicolor GN=SCO4099 PE=4
           SV=1
          Length = 226

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = -3

Query: 391 LLPVSRERA*NVCVRPMEAAEAMAACWPSTTALLCQGTLWVDRYSASAL*GLVLRNWRKG 212
           L  ++RE   ++ VRP  A   MAA + S  A   Q  LW DRY+   +  LV R   +G
Sbjct: 97  LTALNREIQESLVVRPSFAVALMAASFHSEQAARAQTRLWADRYAQCEI--LVERAVARG 154

Query: 211 QIRSKGS 191
           ++  +G+
Sbjct: 155 ELPVRGA 161


>tr|Q1YX35|Q1YX35_PHOPR Putative uncharacterized protein
           OS=Photobacterium profundum 3TCK GN=P3TCK_09258 PE=4
           SV=1
          Length = 388

 Score = 34.3 bits (77), Expect = 6.1
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = +3

Query: 333 AASIGLTHTFQA--LSLETGSRRGLKPASANMLTRLSSSFLGDSTQTFMAPCSLGLGQPS 506
           A+  GL  TF A   ++    RRG  P   ++ T +    LG +T+ F    +LGL +PS
Sbjct: 57  ASEGGLDSTFWAGPENITAAMRRGDVPIEGSVRTEVRRLRLGFTTEDFGYSIALGLPEPS 116

Query: 507 RSFHAMCVRMDSRLYAREDEWK----RPAVALAD 596
            S+ ++   +      RE  W     RPA AL D
Sbjct: 117 NSYFSLDPEI-----KRECIWSGPFYRPASALVD 145


>tr|Q0UPE5|Q0UPE5_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_06369 PE=4 SV=1
          Length = 596

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
 Frame = +1

Query: 4   KSPLFTITRRCKRIGLSQPPSSTGLQPRVLSASL-IFSFGIVGPAARLSFEYSEGLNLIR 180
           +S L   T R K + L  P S   +QPR    +   ++       AR + +  E +    
Sbjct: 173 ESSLQARTLRSKTLQLLSPSSQDVIQPRSRRINTQTYTHPSEALVARTTIDEEEAIKRGT 232

Query: 181 HSKHYLWNVFGPSSNCVEPNPTVHLQSICRPTKSPDITKRL 303
            S +    +  P+ +  EP+P VHL     P   P + KR+
Sbjct: 233 TSSYETMMLKSPNGDVKEPHPMVHLLETWTPVLPPFVAKRV 273


>tr|Q57V06|Q57V06_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.7.2050 PE=4 SV=1
          Length = 807

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
 Frame = -2

Query: 602 SIICKCNCGSLPFVLSRIQARIHPYTHCME-*ARGLSKSQR---ARSHEGLCGVPQER** 435
           S++  C CGS+P V+ R +    P   C     R L   +    A+ HEG C   Q++  
Sbjct: 256 SVVATCPCGSVPLVVVRTRCS-DPVPVCGNVCGRWLDCGEHKCDAKCHEGGCEPCQQQ-- 312

Query: 434 KPG*HVC*CRLQPSSASCFKREGLKC--MCKAYGSCRGH 324
                 C C    ++  C  R   +C  +CKA  SC  H
Sbjct: 313 --VAATCSCGKTQATLPCLMRRSFRCNKVCKAALSCGKH 349


>tr|Q4D928|Q4D928_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053510165.30 PE=4 SV=1
          Length = 817

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
 Frame = -2

Query: 608 CD---SIICKCNCGSLPFVLSRIQARIHPYTHCME*ARGLSKSQR----ARSHEGLCGVP 450
           CD   SII  C CG +P  ++R      P   C      +   QR    A  HEG C   
Sbjct: 252 CDRDPSIIVTCPCGLVPLTVTRKHCS-DPIPTCGNVCGRVLDCQRHTCQALCHEGECNPC 310

Query: 449 QER**KPG*HVC*CRLQPSSASCFKREGLKC--MCKAYGSCRGH 324
           ++R        C CR       C K++  +C  +CK   SC  H
Sbjct: 311 EKRVLTK----CVCRATQQLVPCAKQDEFRCNIVCKTKLSCGKH 350