DK959406
Clone id TST39A01NGRL0004_J17
Library
Length 621
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_J17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CCCAAGTCCCCCTTGTTCACCATCACCAGACGGTGCAAGCGGATTGGGCTCTCTCAGCCT
CCTAGCTCAACTGGCTTGCAACCTAGGGTTCTGTCAGCTAGTCTTATCTTCTCTTTCGGG
ATAGTCGGGCCTGCTGCTCGTTTGTCCTTTGAGTACTCAGAGGGTCTTAACCTTATCCGA
CATAGCAAACACTACCTTTGGAACGTATTTGGCCCTTCCTCCAATTGCGTAGAACCAAAC
CCTACAGTGCACTTGCAGAGTATCTGTCGACCCACAAAGTCCCCTGACATAACAAAGCGG
TTGTGGAAGGCCAACAAGCCGCCATGGCCTCTGCAGCTTCCATAGGCCTTACACATACAT
TTCAAGCCCTCTCTCTTGAAACAGGAAGCAGAAGAGGGTTGAAGCCTGCATCAGCAAACA
TGCTAACCCGGCTTTCATCATCTTTCTTGGGGGACTCCACACAAACCTTCATGGCTCCTT
GCTCTCTGGGACTTGGACAGCCCTCTCGCTCATTCCATGCAATGTGTGTAAGGATGGATT
CTCGCTTGTATGCGAGAGAGGACGAATGGAAGAGACCCGCAGTTGCACTTGCAGATTATG
CTGTCGCAGAGAGTGACCTTG
■■Homology search results ■■ -
sp_hit_id Q8GDY3
Definition sp|Q8GDY3|UPPS_HELMO Undecaprenyl pyrophosphate synthetase OS=Heliobacillus mobilis
Align length 36
Score (bit) 33.1
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959406|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_J17, 5'
(621 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8GDY3|UPPS_HELMO Undecaprenyl pyrophosphate synthetase OS=He... 33 1.2
sp|Q8FYS6|LIVB1_BRUSU Leu/Ile/Val-binding protein homolog 1 OS=B... 33 1.6
sp|Q8YJ23|LIVB1_BRUME Leu/Ile/Val-binding protein homolog 1 OS=B... 33 1.6
sp|Q7G1L2|RAP26_ARATH Ethylene-responsive transcription factor R... 32 2.0
sp|A8Z5Q4|MNMG_SULMW tRNA uridine 5-carboxymethylaminomethyl mod... 32 3.4
sp|Q57BA1|LIVB2_BRUAB Leu/Ile/Val-binding protein homolog 2 OS=B... 32 3.5
sp|Q2YLG0|LIVB2_BRUA2 Leu/Ile/Val-binding protein homolog 2 OS=B... 32 3.5
sp|P14403|POLG_JAEVN Genome polyprotein (Fragment) OS=Japanese e... 30 7.7
sp|P32886|POLG_JAEVJ Genome polyprotein OS=Japanese encephalitis... 30 7.7
sp|P19110|POLG_JAEV5 Genome polyprotein OS=Japanese encephalitis... 30 7.7
sp|P27395|POLG_JAEV1 Genome polyprotein OS=Japanese encephalitis... 30 7.7

>sp|Q8GDY3|UPPS_HELMO Undecaprenyl pyrophosphate synthetase
OS=Heliobacillus mobilis GN=uppS PE=3 SV=1
Length = 260

Score = 33.1 bits (74), Expect = 1.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3

Query: 204 RIWPFLQLRRTKPYSALAEYLSTHKVP*HNKAVVEG 311
R+WPF Q + + AL+E + H++P H +++G
Sbjct: 4 RLWPFGQTKTSADEQALSEQIDPHRIPKHIAIIMDG 39


>sp|Q8FYS6|LIVB1_BRUSU Leu/Ile/Val-binding protein homolog 1
OS=Brucella suis GN=BR1785 PE=3 SV=1
Length = 371

Score = 32.7 bits (73), Expect = 1.6
Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Frame = -3

Query: 523 IAWNEREGCPSPREQGAMKVCVESPKK--DDESRVSMFADAGFNPLLLPVSRERA*NVCV 350
I NE P +G + P+ D+ V F DAGF P + A
Sbjct: 250 IVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTLYSYAAVQSLA 309

Query: 349 R---------PMEAAEAMAACWPSTTALLCQGTLWVDRYSASAL*GLVLRNWRKG 212
+ P E A+AM P T L G L D L G V+ W KG
Sbjct: 310 QAAKAAGSNDPQEVAKAMKEKGPFKTVL---GDLSYDEKGDPKLPGYVMYKWEKG 361


>sp|Q8YJ23|LIVB1_BRUME Leu/Ile/Val-binding protein homolog 1
OS=Brucella melitensis GN=BMEI0263 PE=3 SV=2
Length = 371

Score = 32.7 bits (73), Expect = 1.6
Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Frame = -3

Query: 523 IAWNEREGCPSPREQGAMKVCVESPKK--DDESRVSMFADAGFNPLLLPVSRERA*NVCV 350
I NE P +G + P+ D+ V F DAGF P + A
Sbjct: 250 IVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTLYSYAAVQSLA 309

Query: 349 R---------PMEAAEAMAACWPSTTALLCQGTLWVDRYSASAL*GLVLRNWRKG 212
+ P E A+AM P T L G L D L G V+ W KG
Sbjct: 310 QAAKAAGSNDPQEVAKAMKEKGPFKTVL---GDLSYDEKGDPKLPGYVMYKWEKG 361


>sp|Q7G1L2|RAP26_ARATH Ethylene-responsive transcription factor
RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2
Length = 192

Score = 32.3 bits (72), Expect = 2.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1

Query: 127 GPAARLSFEYSEGLNLIRHSKHYLWNVFGPSSNCVEPNPTVHLQSICRPTKSP 285
G A+L+F + G I+ + H+L N PS ++ PT+ S C + P
Sbjct: 109 GSKAKLNFPENVGTQTIQRNSHFLQNSMQPSLTYIDQCPTLLSYSRCMEQQQP 161


>sp|A8Z5Q4|MNMG_SULMW tRNA uridine 5-carboxymethylaminomethyl
modification enzyme mnmG OS=Sulcia muelleri (strain
GWSS) GN=mnmG PE=3 SV=1
Length = 611

Score = 31.6 bits (70), Expect = 3.4
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1

Query: 22 ITRRCKRIGLSQPPSSTGLQPRVLSASLIFSFGI--VGPAARLSFEYSEGLNLIRHSKHY 195
+T + K+IG TG PR+ SL FS I +G F Y LN+++ K Y
Sbjct: 182 LTEKLKKIGFFSGRMKTGTSPRLDGRSLDFSKMIEQLGDFPIEPFSYLSNLNILKQKKCY 241

Query: 196 L 198
+
Sbjct: 242 I 242


>sp|Q57BA1|LIVB2_BRUAB Leu/Ile/Val-binding protein homolog 2
OS=Brucella abortus GN=BruAb1_1765 PE=3 SV=1
Length = 371

Score = 31.6 bits (70), Expect = 3.5
Identities = 32/116 (27%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
Frame = -3

Query: 523 IAWNEREGCPSPREQGAMKVCVESPKK--DDESRVSMFADAGFNPLLLPVSRERA*NVCV 350
I NE P +G + P+ D+ V F DAGF P V
Sbjct: 250 IVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTFYAYAGVQSLV 309

Query: 349 R---------PMEAAEAMAACWPSTTALLCQGTLWVDRYSASAL*GLVLRNWRKGQ 209
PME A AM P T L G + D +L V+ WRKG+
Sbjct: 310 NAANAAGSNDPMEVATAMKEKGPFKTVL---GDISFDAKGDPSLSPYVMFEWRKGE 362


>sp|Q2YLG0|LIVB2_BRUA2 Leu/Ile/Val-binding protein homolog 2
OS=Brucella abortus (strain 2308) GN=BAB1_1792 PE=3 SV=2
Length = 371

Score = 31.6 bits (70), Expect = 3.5
Identities = 32/116 (27%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
Frame = -3

Query: 523 IAWNEREGCPSPREQGAMKVCVESPKK--DDESRVSMFADAGFNPLLLPVSRERA*NVCV 350
I NE P +G + P+ D+ V F DAGF P V
Sbjct: 250 IVSNELASIAGPAVEGTLNTFGPDPRNNPDNAELVKKFRDAGFEPEAYTFYAYAGVQSLV 309

Query: 349 R---------PMEAAEAMAACWPSTTALLCQGTLWVDRYSASAL*GLVLRNWRKGQ 209
PME A AM P T L G + D +L V+ WRKG+
Sbjct: 310 NAANAAGSNDPMEVATAMKEKGPFKTVL---GDISFDAKGDPSLSPYVMFEWRKGE 362


>sp|P14403|POLG_JAEVN Genome polyprotein (Fragment) OS=Japanese
encephalitis virus (strain Nakayama) PE=3 SV=1
Length = 1440

Score = 30.4 bits (67), Expect = 7.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2

Query: 581 CGSLPFVLSRIQARIHPYTHCME*ARGLSKSQRARSHEGLCGV 453
CGS FV + ++A + Y + E R L+K EG+CGV
Sbjct: 737 CGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKEGVCGV 779


>sp|P32886|POLG_JAEVJ Genome polyprotein OS=Japanese encephalitis
virus (strain Jaoars982) PE=3 SV=1
Length = 3432

Score = 30.4 bits (67), Expect = 7.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2

Query: 581 CGSLPFVLSRIQARIHPYTHCME*ARGLSKSQRARSHEGLCGV 453
CGS FV + ++A + Y + E R L+K EG+CGV
Sbjct: 809 CGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKEGVCGV 851


>sp|P19110|POLG_JAEV5 Genome polyprotein OS=Japanese encephalitis
virus PE=3 SV=1
Length = 3432

Score = 30.4 bits (67), Expect = 7.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2

Query: 581 CGSLPFVLSRIQARIHPYTHCME*ARGLSKSQRARSHEGLCGV 453
CGS FV + ++A + Y + E R L+K EG+CGV
Sbjct: 809 CGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKEGVCGV 851


tr_hit_id B4MJJ1
Definition tr|B4MJJ1|B4MJJ1_DROWI GK20841 OS=Drosophila willistoni
Align length 79
Score (bit) 35.0
E-value 3.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959406|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_J17, 5'
(621 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4MJJ1|B4MJJ1_DROWI GK20841 OS=Drosophila willistoni GN=GK208... 35 3.6
tr|Q9RKM8|Q9RKM8_STRCO Probable tetR family transcriptional regu... 35 4.7
tr|Q1YX35|Q1YX35_PHOPR Putative uncharacterized protein OS=Photo... 34 6.1
tr|Q0UPE5|Q0UPE5_PHANO Putative uncharacterized protein OS=Phaeo... 34 6.2
tr|Q57V06|Q57V06_9TRYP Putative uncharacterized protein OS=Trypa... 34 7.9
tr|Q4D928|Q4D928_TRYCR Putative uncharacterized protein OS=Trypa... 34 7.9

>tr|B4MJJ1|B4MJJ1_DROWI GK20841 OS=Drosophila willistoni GN=GK20841
PE=4 SV=1
Length = 522

Score = 35.0 bits (79), Expect = 3.6
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +3

Query: 288 HNKAVVEGQQAAMASAASIGLTHTFQALSLETGSRRGLKPASANMLTRLSSSFLGDSTQT 467
+N + + + + +G+ ++SL TGS L+ +S + L+ L+S+ +G +T
Sbjct: 95 NNPSPTTTMRVVPSMSPQLGIDGRMSSVSLSTGSASALERSSTSSLSNLNSASVGTNTAV 154

Query: 468 FMAPCSLGLGQPSRSFHAM 524
CS R F +M
Sbjct: 155 LAKECSSQTSNGGRQFLSM 173


>tr|Q9RKM8|Q9RKM8_STRCO Probable tetR family transcriptional
regulator OS=Streptomyces coelicolor GN=SCO4099 PE=4
SV=1
Length = 226

Score = 34.7 bits (78), Expect = 4.7
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = -3

Query: 391 LLPVSRERA*NVCVRPMEAAEAMAACWPSTTALLCQGTLWVDRYSASAL*GLVLRNWRKG 212
L ++RE ++ VRP A MAA + S A Q LW DRY+ + LV R +G
Sbjct: 97 LTALNREIQESLVVRPSFAVALMAASFHSEQAARAQTRLWADRYAQCEI--LVERAVARG 154

Query: 211 QIRSKGS 191
++ +G+
Sbjct: 155 ELPVRGA 161


>tr|Q1YX35|Q1YX35_PHOPR Putative uncharacterized protein
OS=Photobacterium profundum 3TCK GN=P3TCK_09258 PE=4
SV=1
Length = 388

Score = 34.3 bits (77), Expect = 6.1
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = +3

Query: 333 AASIGLTHTFQA--LSLETGSRRGLKPASANMLTRLSSSFLGDSTQTFMAPCSLGLGQPS 506
A+ GL TF A ++ RRG P ++ T + LG +T+ F +LGL +PS
Sbjct: 57 ASEGGLDSTFWAGPENITAAMRRGDVPIEGSVRTEVRRLRLGFTTEDFGYSIALGLPEPS 116

Query: 507 RSFHAMCVRMDSRLYAREDEWK----RPAVALAD 596
S+ ++ + RE W RPA AL D
Sbjct: 117 NSYFSLDPEI-----KRECIWSGPFYRPASALVD 145


>tr|Q0UPE5|Q0UPE5_PHANO Putative uncharacterized protein
OS=Phaeosphaeria nodorum GN=SNOG_06369 PE=4 SV=1
Length = 596

Score = 34.3 bits (77), Expect = 6.2
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Frame = +1

Query: 4 KSPLFTITRRCKRIGLSQPPSSTGLQPRVLSASL-IFSFGIVGPAARLSFEYSEGLNLIR 180
+S L T R K + L P S +QPR + ++ AR + + E +
Sbjct: 173 ESSLQARTLRSKTLQLLSPSSQDVIQPRSRRINTQTYTHPSEALVARTTIDEEEAIKRGT 232

Query: 181 HSKHYLWNVFGPSSNCVEPNPTVHLQSICRPTKSPDITKRL 303
S + + P+ + EP+P VHL P P + KR+
Sbjct: 233 TSSYETMMLKSPNGDVKEPHPMVHLLETWTPVLPPFVAKRV 273


>tr|Q57V06|Q57V06_9TRYP Putative uncharacterized protein
OS=Trypanosoma brucei GN=Tb927.7.2050 PE=4 SV=1
Length = 807

Score = 33.9 bits (76), Expect = 7.9
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Frame = -2

Query: 602 SIICKCNCGSLPFVLSRIQARIHPYTHCME-*ARGLSKSQR---ARSHEGLCGVPQER** 435
S++ C CGS+P V+ R + P C R L + A+ HEG C Q++
Sbjct: 256 SVVATCPCGSVPLVVVRTRCS-DPVPVCGNVCGRWLDCGEHKCDAKCHEGGCEPCQQQ-- 312

Query: 434 KPG*HVC*CRLQPSSASCFKREGLKC--MCKAYGSCRGH 324
C C ++ C R +C +CKA SC H
Sbjct: 313 --VAATCSCGKTQATLPCLMRRSFRCNKVCKAALSCGKH 349


>tr|Q4D928|Q4D928_TRYCR Putative uncharacterized protein
OS=Trypanosoma cruzi GN=Tc00.1047053510165.30 PE=4 SV=1
Length = 817

Score = 33.9 bits (76), Expect = 7.9
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Frame = -2

Query: 608 CD---SIICKCNCGSLPFVLSRIQARIHPYTHCME*ARGLSKSQR----ARSHEGLCGVP 450
CD SII C CG +P ++R P C + QR A HEG C
Sbjct: 252 CDRDPSIIVTCPCGLVPLTVTRKHCS-DPIPTCGNVCGRVLDCQRHTCQALCHEGECNPC 310

Query: 449 QER**KPG*HVC*CRLQPSSASCFKREGLKC--MCKAYGSCRGH 324
++R C CR C K++ +C +CK SC H
Sbjct: 311 EKRVLTK----CVCRATQQLVPCAKQDEFRCNIVCKTKLSCGKH 350