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NBDC - LSDB Archive
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DK959407
Clone id TST39A01NGRL0004_J18
Library
Length 699
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_J18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTCTTGGGCACCCAGGAGCTCTCAAACGGCGTCAAGAGCGTGGGAGTGAGCAATGGGGC
GCGTGTGGTAGCGAGGTTTGGGGGCAAGAAGGGTGCGAAGGCAGCGCCCAGGAAGAGCAG
CTCCGCAGGCAGCAAGGATCGGCCTCTGTGGTACCCCGGCTGCAAGCCCCCCGCATGGCT
GGATGGCTCTCTTGTAGGCGACTATGGCTTCGACCCGCTCTCTCTGGCCAAGCCCGCAGA
ATATTTGCAGTTCGATTTCGACTCCTTGAACCAGAACTTGGCCAAGAATTCTGCAGGGGA
GATTATTGGAAATCGCGTGGACAGCATCACCAACATCAATGCCACTATCCAGCCCTACGC
AGAGGCCTTTGGTCTGCAGCGCTTCCGTGAATGCGAGCTCATCCATGGACGGTGGGCCAT
GCTTGCTACATTGGGCGCCCTCGCCGTCGAAGCCTTCACTGGTGTCACATGGCAAGATGC
TGGCAAGGTTGAGCTTGTCGAGGGAGCTACCTACTTTGGCTTGCCTCTGCCCTTCTCCAT
CTCCACACTGGTCTGGATCGAGGCCCTAGTCATTGGTTACATTGAGTTTCAAAGGAATGG
AGAGCTTGACCCCGAGAAGCGCCTTTACCCAGGCGGCAAGTTCTTCGATCCATTGGGCCT
TGCATCTGACCCTGAGAAGAAAGAGGTATTGAAGCTTGC
■■Homology search results ■■ -
sp_hit_id Q07473
Definition sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana
Align length 187
Score (bit) 304.0
E-value 3.0e-82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959407|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_J18, 5'
         (699 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chl...   304   3e-82
sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chl...   303   6e-82
sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chl...   287   4e-77
sp|Q93WD2|CB29_CHLRE Chlorophyll a-b binding protein CP29 OS=Chl...   205   2e-52
sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chlorop...   105   3e-22
sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chl...   104   4e-22
sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24, chloro...    94   7e-19
sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, c...    90   1e-17
sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B, c...    87   9e-17
sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloropl...    84   7e-16
sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplas...    83   2e-15
sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chlor...    77   7e-14
sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4, chloropl...    69   3e-11
sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplas...    68   5e-11
sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb...    66   2e-10
sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloropla...    66   2e-10
sp|P27523|CB23_HORVU Chlorophyll a-b binding protein of LHCII ty...    64   6e-10
sp|P27489|CB23_SOLLC Chlorophyll a-b binding protein 13, chlorop...    62   2e-09
sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloropl...    62   2e-09
sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein of LHCII typ...    62   3e-09
sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloropl...    62   3e-09
sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII ty...    62   4e-09
sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloropl...    61   5e-09
sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb...    61   7e-09
sp|P04778|CB22_ARATH Chlorophyll a-b binding protein 2, chloropl...    61   7e-09
sp|P12329|CB21_MAIZE Chlorophyll a-b binding protein 1, chloropl...    61   7e-09
sp|P04777|CB21_ARATH Chlorophyll a-b binding protein 165/180, ch...    61   7e-09
sp|P09756|CB23_SOYBN Chlorophyll a-b binding protein 3, chloropl...    60   9e-09
sp|P92919|CB23_APIGR Chlorophyll a-b binding protein, chloroplas...    60   9e-09
sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chlorop...    60   1e-08

>sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=2
           SV=1
          Length = 290

 Score =  304 bits (778), Expect = 3e-82
 Identities = 143/187 (76%), Positives = 158/187 (84%)
 Frame = +2

Query: 137 DRPLWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNR 316
           DRPLWYPG   P WLDGSLVGDYGFDP  L KPAEYLQFD DSL+QNLAKN AG++IG R
Sbjct: 54  DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVEL 496
            ++    +   QPY+E FG+QRFRECELIHGRWAMLATLGAL+VE  TGVTWQDAGKVEL
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL 173

Query: 497 VEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPE 676
           V+G++Y G PLPFSISTL+WIE LVIGYIEFQRN ELD EKRLYPGGKFFDPLGLA+DPE
Sbjct: 174 VDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPE 233

Query: 677 KKEVLKL 697
           K   L+L
Sbjct: 234 KTAQLQL 240


>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1
           SV=1
          Length = 287

 Score =  303 bits (776), Expect = 6e-82
 Identities = 143/187 (76%), Positives = 158/187 (84%)
 Frame = +2

Query: 137 DRPLWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNR 316
           DRPLW+PG K P +LDGSLVGDYGFDP  L KPAEYLQFD DSL+QNLAKN  GE+IG R
Sbjct: 51  DRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTR 110

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVEL 496
            +++   +   QPY+E FGLQRFRECELIHGRWAMLATLGA+ VE  TGVTWQDAGKVEL
Sbjct: 111 TEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVEL 170

Query: 497 VEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPE 676
           V+G++Y G PLPFSISTL+WIE LVIGYIEFQRN ELD EKRLYPGGKFFDPLGLASDP 
Sbjct: 171 VDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPV 230

Query: 677 KKEVLKL 697
           KK  L+L
Sbjct: 231 KKAQLQL 237


>sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=2
           SV=1
          Length = 276

 Score =  287 bits (734), Expect = 4e-77
 Identities = 133/187 (71%), Positives = 154/187 (82%)
 Frame = +2

Query: 137 DRPLWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNR 316
           DR +W+PG  PP WLDGS++GD GFDP  L KPAEYLQ+DFD L+QNLAKN AG+IIG  
Sbjct: 55  DRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGII 114

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVEL 496
            +S        QPY E FG+QRFRECELIHGRWAML TLGA+AVEA TG+ WQDAGKVEL
Sbjct: 115 QESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVEL 174

Query: 497 VEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPE 676
           VEG++Y G PLPFS++TL+WIE LV+GYIEFQRN ELDPEKR+YPGG +FDPLGLA+DPE
Sbjct: 175 VEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPE 233

Query: 677 KKEVLKL 697
           K + LKL
Sbjct: 234 KLDTLKL 240


>sp|Q93WD2|CB29_CHLRE Chlorophyll a-b binding protein CP29
           OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3
          Length = 280

 Score =  205 bits (522), Expect = 2e-52
 Identities = 105/182 (57%), Positives = 130/182 (71%), Gaps = 3/182 (1%)
 Frame = +2

Query: 146 LWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGE---IIGNR 316
           LW P    P WLDGSL GD GFDPL L+KP+E++    D  +QN AKN+ G    I+   
Sbjct: 52  LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQAT 111

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVEL 496
            D +++ N  + PY+E FGL RFRECELIHGRWAMLA LGAL  EA TGV+W +AGKVEL
Sbjct: 112 PDEVSSENR-LAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL 170

Query: 497 VEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPE 676
            +GA+Y GL LPFSI+ L+WIE +++G  EF RN E +PEKR YPGG  FDPL LAS+ E
Sbjct: 171 -DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDE 228

Query: 677 KK 682
           ++
Sbjct: 229 ER 230


>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A,
           chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1
          Length = 246

 Score =  105 bits (261), Expect = 3e-22
 Identities = 70/186 (37%), Positives = 92/186 (49%), Gaps = 3/186 (1%)
 Frame = +2

Query: 149 WYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNRVDSI 328
           W PG   P++LDGS  GD+GFD L L                       GE+  N     
Sbjct: 49  WMPGQPRPSYLDGSAPGDFGFDSLGL-----------------------GEVPAN----- 80

Query: 329 TNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVELVEG- 505
                          L+R++E ELIH RWAMLA  G +  EA     W  A +   + G 
Sbjct: 81  ---------------LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGG 125

Query: 506 -ATYFGLPLPF-SISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPEK 679
            ATY G P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DP K
Sbjct: 126 QATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPAK 184

Query: 680 KEVLKL 697
            E LK+
Sbjct: 185 FEELKV 190


>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21,
           chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1
          Length = 245

 Score =  104 bits (260), Expect = 4e-22
 Identities = 72/186 (38%), Positives = 88/186 (47%), Gaps = 3/186 (1%)
 Frame = +2

Query: 149 WYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNRVDSI 328
           W+PG   PA LDGS  GD+GFDPL LA   E                             
Sbjct: 48  WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE----------------------------- 78

Query: 329 TNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGK-VELVEG 505
                           +RF+E E+ H RWAML   G L  EA     W  A +   L +G
Sbjct: 79  --------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDG 124

Query: 506 -ATYFGLPLPF-SISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPEK 679
            ATY G P+P+ ++ T++ IE L I + E QR  E DPEK+ YPGG  FDPLG + DP K
Sbjct: 125 QATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGA-FDPLGFSKDPAK 183

Query: 680 KEVLKL 697
            E LKL
Sbjct: 184 FEELKL 189


>sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24,
           chloroplastic OS=Spinacia oleracea PE=2 SV=1
          Length = 261

 Score = 94.0 bits (232), Expect = 7e-19
 Identities = 71/221 (32%), Positives = 91/221 (41%), Gaps = 38/221 (17%)
 Frame = +2

Query: 149 WYPGCK------PPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIG 310
           W P  K       P WLDGSL GD+GFDPL L K   +L++                   
Sbjct: 60  WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW------------------- 100

Query: 311 NRVDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKV 490
                                   +RE ELIHGRWAMLA LG    +A+TG+ W +AG  
Sbjct: 101 ------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGAD 136

Query: 491 ELVEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGE-LDPEKRL-------------- 625
                    G   PFS  TL+  + L++G++E +R  +  DP+ +               
Sbjct: 137 P--------GAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENF 188

Query: 626 --------YPGGKFFDPLGLAS---------DPEKKEVLKL 697
                   YPGGKFFDPL LA          D +K E LKL
Sbjct: 189 SNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKL 229


>sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A,
           chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3
           SV=1
          Length = 256

 Score = 89.7 bits (221), Expect = 1e-17
 Identities = 66/208 (31%), Positives = 87/208 (41%), Gaps = 32/208 (15%)
 Frame = +2

Query: 170 PAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNRVDSITNINATI 349
           P WLDGSL GDYGFDPL L K   +L++                                
Sbjct: 68  PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 95

Query: 350 QPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVELVEGATYFGLPL 529
                      +RE ELIHGRWAM A LG    +A++G+ W +AG           G   
Sbjct: 96  -----------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIA 136

Query: 530 PFSISTLVWIEALVIGYIEFQRNGE-LDPEKRL----------------------YPGGK 640
           PFS  TL+  + +++G++E +R  +  DP+ +                       YPGGK
Sbjct: 137 PFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGK 196

Query: 641 FFDPLGLAS---------DPEKKEVLKL 697
           FFDPL LA          D EK E LK+
Sbjct: 197 FFDPLALAGTLNNGVYVPDTEKLERLKV 224


>sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B,
           chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3
           SV=1
          Length = 256

 Score = 87.0 bits (214), Expect = 9e-17
 Identities = 68/221 (30%), Positives = 88/221 (39%), Gaps = 38/221 (17%)
 Frame = +2

Query: 149 WYPGCKP------PAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIG 310
           W P  K       P WLDGSL GD+GFDPL L K   +L++                   
Sbjct: 55  WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW------------------- 95

Query: 311 NRVDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKV 490
                                   +RE ELIHGRWAM A LG    +A++G+ W +AG  
Sbjct: 96  ------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGAD 131

Query: 491 ELVEGATYFGLPLPFSISTLVWIEALVIGYIEFQR-----------------------NG 601
                    G   PFS  +L+  + L++G++E +R                       N 
Sbjct: 132 P--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENF 183

Query: 602 ELDPEKRLYPGGKFFDPLGLAS---------DPEKKEVLKL 697
                ++ YPGGKFFDPL LA          D EK E LKL
Sbjct: 184 ANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKL 224


>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7,
           chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
          Length = 270

 Score = 84.0 bits (206), Expect = 7e-16
 Identities = 62/205 (30%), Positives = 80/205 (39%), Gaps = 23/205 (11%)
 Frame = +2

Query: 137 DRPLWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNR 316
           DRPLW+PG  PP WLDGSL GD+GFDPL LA   E L+++                    
Sbjct: 64  DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWN-------------------- 103

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGV------TWQD 478
                                  ++ EL+H RWAML   G    E  T +      +W  
Sbjct: 104 -----------------------QQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYT 140

Query: 479 AGKVELVEGATYFGLPLPFSISTLVWIEALVIGYIEFQR-----------------NGEL 607
           AG+ E     T           TL  +E ++IG+ E +R                 N +L
Sbjct: 141 AGEQEYFTDTT-----------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKL 189

Query: 608 DPEKRLYPGGKFFDPLGLASDPEKK 682
                 YPGG +FDPLG  S    K
Sbjct: 190 TGTDVGYPGGLWFDPLGWGSGSPAK 214
tr_hit_id B7FIZ5
Definition tr|B7FIZ5|B7FIZ5_MEDTR Putative uncharacterized protein OS=Medicago truncatula
Align length 216
Score (bit) 315.0
E-value 2.0e-84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959407|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_J18, 5'
         (699 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FIZ5|B7FIZ5_MEDTR Putative uncharacterized protein OS=Medic...   315   2e-84
tr|Q9XQB2|Q9XQB2_PHAAU Chlorophyll a/b binding protein CP29 OS=P...   311   3e-83
tr|A7PP40|A7PP40_VITVI Chromosome chr8 scaffold_23, whole genome...   309   1e-82
tr|A5C288|A5C288_VITVI Putative uncharacterized protein OS=Vitis...   309   1e-82
tr|A9PIZ2|A9PIZ2_POPJC Putative uncharacterized protein OS=Popul...   306   8e-82
tr|Q6Z411|Q6Z411_ORYSJ Os07g0558400 protein OS=Oryza sativa subs...   304   3e-81
tr|O65217|O65217_ORYSA Chlorophyll a/b-binding protein OS=Oryza ...   304   3e-81
tr|A2YML1|A2YML1_ORYSI Putative uncharacterized protein OS=Oryza...   304   3e-81
tr|Q0WW97|Q0WW97_ARATH Lhcb4-protein OS=Arabidopsis thaliana GN=...   304   4e-81
tr|A9U3M1|A9U3M1_PHYPA Predicted protein OS=Physcomitrella paten...   303   5e-81
tr|A9T2F8|A9T2F8_PHYPA Predicted protein OS=Physcomitrella paten...   302   1e-80
tr|Q0PWS7|Q0PWS7_TOBAC Chloroplast pigment-binding protein CP29 ...   302   2e-80
tr|O24561|O24561_MAIZE Putative uncharacterized protein OS=Zea m...   301   2e-80
tr|A9PJF0|A9PJF0_POPJC Putative uncharacterized protein OS=Popul...   300   5e-80
tr|B4FJG1|B4FJG1_MAIZE Putative uncharacterized protein OS=Zea m...   298   3e-79
tr|B7SB30|B7SB30_BAMOL LHCB4 OS=Bambusa oldhamii PE=2 SV=1            296   9e-79
tr|B7SAW1|B7SAW1_9POAL Chloroplast chlorophyll a/b binding prote...   295   1e-78
tr|A9PK34|A9PK34_POPJC Putative uncharacterized protein OS=Popul...   292   2e-77
tr|A9NKX0|A9NKX0_PICSI Putative uncharacterized protein OS=Picea...   276   9e-73
tr|A9P071|A9P071_PICSI Putative uncharacterized protein OS=Picea...   275   3e-72
tr|A9NYR8|A9NYR8_PICSI Putative uncharacterized protein OS=Picea...   274   3e-72
tr|A3BL40|A3BL40_ORYSJ Putative uncharacterized protein OS=Oryza...   258   2e-67
tr|A4QPJ4|A4QPJ4_ACEAT Chloroplast light-harvesting protein CP29...   210   8e-53
tr|Q7XYQ5|Q7XYQ5_BIGNA Chlorophyll a/b-binding protein CP29 OS=B...   209   1e-52
tr|B5A4H8|B5A4H8_GYMST Chlorophyll a/b binding protein CP29 OS=G...   207   4e-52
tr|A8J6D1|A8J6D1_CHLRE Chlorophyll a-b binding protein of photos...   205   2e-51
tr|A2SY49|A2SY49_CHLIN Light-harvesting chlorophyll-a/b binding ...   205   2e-51
tr|Q3B9U8|Q3B9U8_OSTTA Chloroplast chlorophyll a/b-binding prote...   199   1e-49
tr|A2SY24|A2SY24_MESVI Light-harvesting chlorophyll-a/b binding ...   196   9e-49
tr|B1N8L8|B1N8L8_BRAOG Chloroplast chlorophyll a/b-binding prote...   195   3e-48

>tr|B7FIZ5|B7FIZ5_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 289

 Score =  315 bits (807), Expect = 2e-84
 Identities = 153/216 (70%), Positives = 165/216 (76%)
 Frame = +2

Query: 50  SNGARVVARFXXXXXXXXXXXXXXXXXXXDRPLWYPGCKPPAWLDGSLVGDYGFDPLSLA 229
           SN  R+ ARF                   DRPLW+PG K P WLDGSLVGDYGFDP  L 
Sbjct: 24  SNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWFPGAKSPEWLDGSLVGDYGFDPFGLG 83

Query: 230 KPAEYLQFDFDSLNQNLAKNSAGEIIGNRVDSITNINATIQPYAEAFGLQRFRECELIHG 409
           KPAEYLQFD DSL+QNLAKN AG++IG R +     +   QPY+E FGLQRFRECELIHG
Sbjct: 84  KPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHG 143

Query: 410 RWAMLATLGALAVEAFTGVTWQDAGKVELVEGATYFGLPLPFSISTLVWIEALVIGYIEF 589
           RWAMLATLGAL VE  TGVTWQDAGKVELVEG+TY G PLPFSI+TL+WIE LVIGYIEF
Sbjct: 144 RWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEF 203

Query: 590 QRNGELDPEKRLYPGGKFFDPLGLASDPEKKEVLKL 697
           QRN ELD EKRLYPGGKFFDPLGLASDPEKK  L+L
Sbjct: 204 QRNAELDSEKRLYPGGKFFDPLGLASDPEKKATLQL 239


>tr|Q9XQB2|Q9XQB2_PHAAU Chlorophyll a/b binding protein CP29
           OS=Phaseolus aureus GN=CipCp29 PE=2 SV=1
          Length = 290

 Score =  311 bits (797), Expect = 3e-83
 Identities = 155/232 (66%), Positives = 170/232 (73%)
 Frame = +2

Query: 2   FLGTQELSNGVKSVGVSNGARVVARFXXXXXXXXXXXXXXXXXXXDRPLWYPGCKPPAWL 181
           F+GT+ L         S   R+ ARF                   DRPLWYPG K P WL
Sbjct: 14  FMGTRLLD------AHSGSGRIQARFGFGSKKKAAPKKVSKGPSTDRPLWYPGAKAPEWL 67

Query: 182 DGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNRVDSITNINATIQPYA 361
           DGSLVGDYGFDP  L KPAEYLQF+ DSL+QNLAKN AG IIG R +     +   QPY+
Sbjct: 68  DGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYS 127

Query: 362 EAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVELVEGATYFGLPLPFSI 541
           E FGLQRFRECELIHGRWAMLATLGAL+VE  TGVTWQDAGKVELVEG++Y G PLPFSI
Sbjct: 128 EVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI 187

Query: 542 STLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPEKKEVLKL 697
           +TL+WIE LVIGYIEFQRN ELDPEKRLYPGG +FDPLGLASDPEKK  L+L
Sbjct: 188 TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQL 239


>tr|A7PP40|A7PP40_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021499001
           PE=4 SV=1
          Length = 342

 Score =  309 bits (791), Expect = 1e-82
 Identities = 143/187 (76%), Positives = 161/187 (86%)
 Frame = +2

Query: 137 DRPLWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNR 316
           DRPLW+PG   P WLDG+LVGDYGFDP  L KPAEYLQ+D+DSL+QNLAKN AG++IG R
Sbjct: 106 DRPLWFPGAVAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTR 165

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVEL 496
            +     +   QPY E FGLQRFRECELIHGRWAMLATLGALAVE+ TGVTWQDAGKVEL
Sbjct: 166 FEGGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVEL 225

Query: 497 VEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPE 676
           +EG++Y G PLPFS++TL+WIE LVIGYIEFQRN ELDPEKRLYPGGKFFDPLGLA+DPE
Sbjct: 226 IEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPE 285

Query: 677 KKEVLKL 697
           KK VL+L
Sbjct: 286 KKAVLQL 292


>tr|A5C288|A5C288_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010727 PE=4 SV=1
          Length = 288

 Score =  309 bits (791), Expect = 1e-82
 Identities = 143/187 (76%), Positives = 161/187 (86%)
 Frame = +2

Query: 137 DRPLWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNR 316
           DRPLW+PG   P WLDG+LVGDYGFDP  L KPAEYLQ+D+DSL+QNLAKN AG++IG R
Sbjct: 52  DRPLWFPGAVAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTR 111

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVEL 496
            +     +   QPY E FGLQRFRECELIHGRWAMLATLGALAVE+ TGVTWQDAGKVEL
Sbjct: 112 FEGGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVEL 171

Query: 497 VEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPE 676
           +EG++Y G PLPFS++TL+WIE LVIGYIEFQRN ELDPEKRLYPGGKFFDPLGLA+DPE
Sbjct: 172 IEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPE 231

Query: 677 KKEVLKL 697
           KK VL+L
Sbjct: 232 KKAVLQL 238


>tr|A9PIZ2|A9PIZ2_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 285

 Score =  306 bits (784), Expect = 8e-82
 Identities = 150/216 (69%), Positives = 167/216 (77%)
 Frame = +2

Query: 50  SNGARVVARFXXXXXXXXXXXXXXXXXXXDRPLWYPGCKPPAWLDGSLVGDYGFDPLSLA 229
           SN  R+ ARF                   DRPLWYPG K P +LDGSLVGDYGFDP  L 
Sbjct: 23  SNSGRIQARFGFGGKKAPKKSIKPSTP--DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLG 80

Query: 230 KPAEYLQFDFDSLNQNLAKNSAGEIIGNRVDSITNINATIQPYAEAFGLQRFRECELIHG 409
           KPAEYLQF+ DSL+QNLAKN AG+IIG R +     +   QPY+E FGLQRFRECELIHG
Sbjct: 81  KPAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHG 140

Query: 410 RWAMLATLGALAVEAFTGVTWQDAGKVELVEGATYFGLPLPFSISTLVWIEALVIGYIEF 589
           RWAMLATLGAL+VE  TGVTWQDAGKVELVEG++Y G PLPFSI+ L+WIEA++IGYIEF
Sbjct: 141 RWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITALIWIEAVIIGYIEF 200

Query: 590 QRNGELDPEKRLYPGGKFFDPLGLASDPEKKEVLKL 697
           QRN ELDPEKRLYPGG+FFDPLGLASDPEKK  L+L
Sbjct: 201 QRNAELDPEKRLYPGGQFFDPLGLASDPEKKATLQL 236


>tr|Q6Z411|Q6Z411_ORYSJ Os07g0558400 protein OS=Oryza sativa subsp.
           japonica GN=P0567H04.14 PE=2 SV=1
          Length = 290

 Score =  304 bits (779), Expect = 3e-81
 Identities = 145/187 (77%), Positives = 160/187 (85%)
 Frame = +2

Query: 137 DRPLWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNR 316
           DRPLW+PG   P +LDGSLVGDYGFDP  L KPAEYLQF+ DSL+QNLAKN+AGEIIG R
Sbjct: 53  DRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTR 112

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVEL 496
            ++    +   QPY E FGLQRFRECELIHGRWAMLATLGAL+VE  TGVTWQDAGKVEL
Sbjct: 113 FETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL 172

Query: 497 VEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPE 676
           V+G++Y G PLPFSISTL+WIE LVIGYIEFQRN ELDPEKRLYPGG +FDPLGLASDPE
Sbjct: 173 VDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPE 232

Query: 677 KKEVLKL 697
           KKE L+L
Sbjct: 233 KKERLQL 239


>tr|O65217|O65217_ORYSA Chlorophyll a/b-binding protein OS=Oryza
           sativa GN=RCABP69 PE=2 SV=1
          Length = 290

 Score =  304 bits (779), Expect = 3e-81
 Identities = 145/187 (77%), Positives = 160/187 (85%)
 Frame = +2

Query: 137 DRPLWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNR 316
           DRPLW+PG   P +LDGSLVGDYGFDP  L KPAEYLQF+ DSL+QNLAKN+AGEIIG R
Sbjct: 53  DRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTR 112

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVEL 496
            ++    +   QPY E FGLQRFRECELIHGRWAMLATLGAL+VE  TGVTWQDAGKVEL
Sbjct: 113 FETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL 172

Query: 497 VEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPE 676
           V+G++Y G PLPFSISTL+WIE LVIGYIEFQRN ELDPEKRLYPGG +FDPLGLASDPE
Sbjct: 173 VDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPE 232

Query: 677 KKEVLKL 697
           KKE L+L
Sbjct: 233 KKERLQL 239


>tr|A2YML1|A2YML1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_26463 PE=4 SV=1
          Length = 290

 Score =  304 bits (779), Expect = 3e-81
 Identities = 145/187 (77%), Positives = 160/187 (85%)
 Frame = +2

Query: 137 DRPLWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNR 316
           DRPLW+PG   P +LDGSLVGDYGFDP  L KPAEYLQF+ DSL+QNLAKN+AGEIIG R
Sbjct: 53  DRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTR 112

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVEL 496
            ++    +   QPY E FGLQRFRECELIHGRWAMLATLGAL+VE  TGVTWQDAGKVEL
Sbjct: 113 FETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL 172

Query: 497 VEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPE 676
           V+G++Y G PLPFSISTL+WIE LVIGYIEFQRN ELDPEKRLYPGG +FDPLGLASDPE
Sbjct: 173 VDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPE 232

Query: 677 KKEVLKL 697
           KKE L+L
Sbjct: 233 KKERLQL 239


>tr|Q0WW97|Q0WW97_ARATH Lhcb4-protein OS=Arabidopsis thaliana
           GN=At5g01530 PE=2 SV=1
          Length = 290

 Score =  304 bits (778), Expect = 4e-81
 Identities = 143/187 (76%), Positives = 158/187 (84%)
 Frame = +2

Query: 137 DRPLWYPGCKPPAWLDGSLVGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNR 316
           DRPLWYPG   P WLDGSLVGDYGFDP  L KPAEYLQFD DSL+QNLAKN AG++IG R
Sbjct: 54  DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113

Query: 317 VDSITNINATIQPYAEAFGLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVEL 496
            ++    +   QPY+E FG+QRFRECELIHGRWAMLATLGAL+VE  TGVTWQDAGKVEL
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL 173

Query: 497 VEGATYFGLPLPFSISTLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPE 676
           V+G++Y G PLPFSISTL+WIE LVIGYIEFQRN ELD EKRLYPGGKFFDPLGLA+DPE
Sbjct: 174 VDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPE 233

Query: 677 KKEVLKL 697
           K   L+L
Sbjct: 234 KTAQLQL 240


>tr|A9U3M1|A9U3M1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_228001 PE=4 SV=1
          Length = 296

 Score =  303 bits (777), Expect = 5e-81
 Identities = 153/229 (66%), Positives = 170/229 (74%), Gaps = 7/229 (3%)
 Frame = +2

Query: 32  VKSVGVSNGARVVARFXXXXXXXXXXXXXXXXXXX------DRPLWYPGCKPPAWLDGSL 193
           V+  GV NGARVVAR                          DRPLW+PG + P WLDGSL
Sbjct: 19  VECFGVKNGARVVARSSLGGKAKQVAKQASKTLKKSSGAGADRPLWFPGARAPEWLDGSL 78

Query: 194 VGDYGFDPLSLAKPAEYLQFDFDSLNQNLAKNSAGEIIGNRVDSITNINAT-IQPYAEAF 370
            GDYGFDPLSL K  EYLQ + DSLNQNLAKN AG++IG R+     I  T  QPY+E F
Sbjct: 79  PGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISKKEEIAPTPFQPYSEVF 138

Query: 371 GLQRFRECELIHGRWAMLATLGALAVEAFTGVTWQDAGKVELVEGATYFGLPLPFSISTL 550
           GLQRFRECELIHGRWAMLA LGAL+VEAFTGVTWQDAGKVELV+GA+YFGLPLPFSI++L
Sbjct: 139 GLQRFRECELIHGRWAMLAILGALSVEAFTGVTWQDAGKVELVDGASYFGLPLPFSITSL 198

Query: 551 VWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPEKKEVLKL 697
           V+IEA ++G+IEFQRN ELDPEKRLYPGGKFFDPL  A   EKKE LKL
Sbjct: 199 VYIEAFLVGFIEFQRNAELDPEKRLYPGGKFFDPLNFADTEEKKETLKL 247