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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959439
Clone id TST39A01NGRL0004_L02
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_L02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCTCTCTCTCTCTCTCTAAGAACGTTTTCTGCGCCTAACGAGCTGAGATTACGAGTTTG
TTGTGCGTGGGCGAGGCGTTTTCTCAACATGAAGCTTTGCGGAATGGTAGCTCCGGCAGC
CCCTTGAAGCAGGGACCATGGATCCCGAGCAGACATTCTTGAGAGTGCATGCCCGATTAT
CGGGCATGCTAGCGCAGCTTCTGAGCCCTAGACTACGAGGCTTCCTTGAACACCTCTGCC
TGGTTGTCGCCATTCTTCTTCTCGCCCTGTTGGCGGTGATGCATGTCAACTTTGTCTCTC
AGGCTGGTTGTGCAAGTGAGTTGTCTCACGATCATGTGGCTGAAGCTGAGCTTCTGCAAA
TAAAGATGGTTGGACAAGGATTATGGTCTCAAAAATCATTCCGGCAATCTCTGGATGACA
TTTATGCCAGTGGACAATCTGCATCTTTAGCCTCCTCCAGTGGAGTGGTCCCTACAGGAA
AAGCTTGGTTCTATTGGCTGTTATCAAGCCCTTGGAACAGCAAAGGAAGGGAGAGCGTTG
AAGATGGTGCATCAAATGACAGAGCAGTAGCTGATAGCTCTTTGTACAGTGCCGTTGAGA
GGCAGGCAGCTCTNTTGCAGCTGTGGGATAGCTGGACATTATATGGAGCAACATGGCTAG
C
■■Homology search results ■■ -
sp_hit_id Q876F4
Definition sp|Q876F4|SC241_SACBA Protein transport protein SEC24-1 OS=Saccharomyces bayanus
Align length 70
Score (bit) 32.3
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959439|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_L02, 5'
         (661 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q876F4|SC241_SACBA Protein transport protein SEC24-1 OS=Sacch...    32   2.3  
sp|Q91661|GLI4_XENLA Zinc finger protein GLI4 OS=Xenopus laevis ...    31   6.7  

>sp|Q876F4|SC241_SACBA Protein transport protein SEC24-1
            OS=Saccharomyces bayanus GN=SEC241 PE=3 SV=1
          Length = 885

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
 Frame = +3

Query: 468  VPTGKAWFYWLLSSPWNSKGRESVEDGASNDRAVADSSLYS------------AVERQAA 611
            VP GK+    L+ SP+N + R  +     N+  +   SLY+              ER+ A
Sbjct: 792  VPVGKSELPVLIDSPFNVRLRNIISKIRENNDTITFQSLYTIRGPSINEPANLTAEREMA 851

Query: 612  LLQLWDSWTL 641
             L+LW S TL
Sbjct: 852  SLRLWVSSTL 861


>sp|Q91661|GLI4_XENLA Zinc finger protein GLI4 OS=Xenopus laevis
            GN=gli4 PE=2 SV=1
          Length = 1361

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -1

Query: 625  HSCXRAACLSTALYKELSATALSFDAPSSTLSLPLLFQGLDNSQ*NQAFPVGTTPLEEAK 446
            HS   +  LS  L +  S T+     P ++L+LP +  G++N        + TT  EE+K
Sbjct: 1296 HSSLMSGTLSPGLLQSFSQTSSRLTTPRNSLTLPSIPAGINNMAIGDMSSMLTTLAEESK 1355
tr_hit_id Q75GP2
Definition tr|Q75GP2|Q75GP2_ORYSJ Os03g0659900 protein OS=Oryza sativa subsp. japonica
Align length 93
Score (bit) 93.2
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959439|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_L02, 5'
         (661 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q75GP2|Q75GP2_ORYSJ Os03g0659900 protein OS=Oryza sativa subs...    93   1e-17
tr|B8ANL3|B8ANL3_ORYSI Putative uncharacterized protein OS=Oryza...    93   1e-17
tr|Q8GWG6|Q8GWG6_ARATH Putative uncharacterized protein At1g6100...    83   2e-14
tr|Q7XAE6|Q7XAE6_PETIN S3 self-incompatibility locus-linked poll...    82   3e-14
tr|A3AL22|A3AL22_ORYSJ Putative uncharacterized protein OS=Oryza...    80   1e-13
tr|A7PYL4|A7PYL4_VITVI Chromosome chr12 scaffold_38, whole genom...    73   1e-11
tr|A5C4W2|A5C4W2_VITVI Putative uncharacterized protein OS=Vitis...    73   1e-11
tr|A9NW80|A9NW80_PICSI Putative uncharacterized protein OS=Picea...    69   2e-10
tr|Q9C953|Q9C953_ARATH Putative uncharacterized protein T7P1.14 ...    67   1e-09
tr|A9NRS7|A9NRS7_PICSI Putative uncharacterized protein OS=Picea...    63   1e-08
tr|Q7XAE4|Q7XAE4_PETIN S2 self-incompatibility locus-linked poll...    55   4e-06
tr|Q7XAE5|Q7XAE5_PETIN S1 self-incompatibility locus-linked poll...    53   2e-05
tr|A9NW23|A9NW23_PICSI Putative uncharacterized protein OS=Picea...    44   0.007
tr|Q5FT02|Q5FT02_GLUOX Transcriptional regluator LysR family OS=...    38   0.49 
tr|A9NM75|A9NM75_PICSI Putative uncharacterized protein OS=Picea...    37   0.82 
tr|B3PA46|B3PA46_DROER GG10959 OS=Drosophila erecta GN=GG10959 P...    37   1.1  
tr|Q3SVD6|Q3SVD6_NITWN Transcriptional regulatory protein, LysR ...    37   1.4  

>tr|Q75GP2|Q75GP2_ORYSJ Os03g0659900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0065L20.21 PE=4 SV=1
          Length = 664

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 48/93 (51%), Positives = 58/93 (62%)
 Frame = +3

Query: 138 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 317
           MDPEQTFLRVHARLSGML+QLL+PR+R  LE+               MH NFV Q GC+S
Sbjct: 1   MDPEQTFLRVHARLSGMLSQLLTPRIRLALEYLYLAGAVALFCLLVVMHTNFVQQPGCSS 60

Query: 318 ELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 416
           E S     EA+L+QIK++  GLW  K     +D
Sbjct: 61  EFSGIEFGEAQLVQIKIISGGLWVSKGASYIMD 93


>tr|B8ANL3|B8ANL3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12877 PE=4 SV=1
          Length = 713

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 48/93 (51%), Positives = 58/93 (62%)
 Frame = +3

Query: 138 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 317
           MDPEQTFLRVHARLSGML+QLL+PR+R  LE+               MH NFV Q GC+S
Sbjct: 1   MDPEQTFLRVHARLSGMLSQLLTPRIRLALEYLYLAGAVALFCLLVVMHTNFVQQPGCSS 60

Query: 318 ELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 416
           E S     EA+L+QIK++  GLW  K     +D
Sbjct: 61  EFSGIEFGEAQLVQIKIISGGLWVSKGASYIMD 93


>tr|Q8GWG6|Q8GWG6_ARATH Putative uncharacterized protein
           At1g61000/T7P1_14 OS=Arabidopsis thaliana
           GN=At1g61000/T7P1_14 PE=2 SV=1
          Length = 623

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 43/93 (46%), Positives = 56/93 (60%)
 Frame = +3

Query: 138 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 317
           MDPEQTF+RV  R S    Q+L+PR+RGFLE+               MH N+V Q GC+S
Sbjct: 1   MDPEQTFIRVQERFS----QILTPRIRGFLEYTYLFVAITLFCILVVMHANYVQQPGCSS 56

Query: 318 ELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 416
           EL+   +AEAEL+QIK+   GLWS+     + D
Sbjct: 57  ELTGVELAEAELMQIKITSAGLWSRNDESTAAD 89


>tr|Q7XAE6|Q7XAE6_PETIN S3 self-incompatibility locus-linked pollen
           3.15 protein OS=Petunia integrifolia subsp. inflata
           GN=S3-3.15 PE=2 SV=1
          Length = 660

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 52/158 (32%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
 Frame = +3

Query: 138 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 317
           MDPEQTF+RV  R     AQ+L+PR+R  LE+               MH N+V Q GC+S
Sbjct: 1   MDPEQTFIRVQERF----AQMLTPRIRVTLEYLYLFIAVTLFSILVVMHANYVQQPGCSS 56

Query: 318 ELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLDDIY----XXXXXXXXXXXXXVVPTGKA 485
           ELS  ++ EA+L+QIK+   GLWSQ      + D+                  V+   K 
Sbjct: 57  ELSRVNIMEAQLIQIKITSAGLWSQNQPNYDVVDVANKEPFSENLKHADEDSPVISATKP 116

Query: 486 WFYWLLSSPWNSK--------GRESVEDGASNDRAVAD 575
           W  WL     + K          ES  +G+++  +V D
Sbjct: 117 WLDWLSDGSKSGKSLLYSKNESPESFSEGSTSSESVGD 154


>tr|A3AL22|A3AL22_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011494 PE=4 SV=1
          Length = 978

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 48/118 (40%), Positives = 58/118 (49%), Gaps = 25/118 (21%)
 Frame = +3

Query: 138 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQA---- 305
           MDPEQTFLRVHARLSGML+QLL+PR+R  LE+               MH NFV Q     
Sbjct: 1   MDPEQTFLRVHARLSGMLSQLLTPRIRLALEYLYLAGAVALFCLLVVMHTNFVQQCEHIE 60

Query: 306 ---------------------GCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 416
                                GC+SE S     EA+L+QIK++  GLW  K     +D
Sbjct: 61  MKKHEGIATLTTLSYLFHVKPGCSSEFSGIEFGEAQLVQIKIISGGLWVSKGASYIMD 118


>tr|A7PYL4|A7PYL4_VITVI Chromosome chr12 scaffold_38, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026485001
           PE=4 SV=1
          Length = 625

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 38/85 (44%), Positives = 49/85 (57%)
 Frame = +3

Query: 138 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 317
           MDPEQTF+RV  R S    Q+L+PR+R  LE+               MH N+V Q GC+S
Sbjct: 1   MDPEQTFIRVQERFS----QMLTPRVRASLEYIYLFVAITLFCILVVMHANYVQQPGCSS 56

Query: 318 ELSHDHVAEAELLQIKMVGQGLWSQ 392
           E S     EA+L+QIK+   GLWS+
Sbjct: 57  EFSGVETTEAQLIQIKITSAGLWSR 81


>tr|A5C4W2|A5C4W2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036910 PE=4 SV=1
          Length = 673

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 38/85 (44%), Positives = 49/85 (57%)
 Frame = +3

Query: 138 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 317
           MDPEQTF+RV  R S    Q+L+PR+R  LE+               MH N+V Q GC+S
Sbjct: 1   MDPEQTFIRVQERFS----QMLTPRVRASLEYIYLFVAITLFCILVVMHANYVQQPGCSS 56

Query: 318 ELSHDHVAEAELLQIKMVGQGLWSQ 392
           E S     EA+L+QIK+   GLWS+
Sbjct: 57  EFSGVETTEAQLIQIKITSAGLWSR 81


>tr|A9NW80|A9NW80_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 270

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 43/85 (50%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
 Frame = +3

Query: 138 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCA- 314
           MDP  TFLRVHARLSGMLAQLL PR R  L                 MHVNFV+QAG A 
Sbjct: 1   MDPHHTFLRVHARLSGMLAQLLMPRNRSSLR-----LAIVLLGVLTVMHVNFVAQAGYAN 55

Query: 315 -------SELSHDHVAEAELLQIKM 368
                  +ELS  +++E++LLQIK+
Sbjct: 56  ELSGSNFNELSGSNISESQLLQIKL 80


>tr|Q9C953|Q9C953_ARATH Putative uncharacterized protein T7P1.14
           OS=Arabidopsis thaliana GN=T7P1.14 PE=4 SV=1
          Length = 974

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 32/75 (42%), Positives = 45/75 (60%)
 Frame = +3

Query: 192 AQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCASELSHDHVAEAELLQIKMV 371
           +Q+L+PR+RGFLE+               MH N+V Q GC+SEL+   +AEAEL+QIK+ 
Sbjct: 417 SQILTPRIRGFLEYTYLFVAITLFCILVVMHANYVQQPGCSSELTGVELAEAELMQIKIT 476

Query: 372 GQGLWSQKSFRQSLD 416
             GLWS+     + D
Sbjct: 477 SAGLWSRNDESTAAD 491


>tr|A9NRS7|A9NRS7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 270

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
 Frame = +3

Query: 138 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 317
           MDP  TFLRVH R SGMLAQLL PR R  L                 MHVNF++QAG A+
Sbjct: 1   MDPHHTFLRVHVRFSGMLAQLLMPRNRSSLR-----LAIVLLGVLTVMHVNFIAQAGYAN 55

Query: 318 ELS--------HDHVAEAELLQIKM 368
           ELS          +++E++L QIK+
Sbjct: 56  ELSGSNFNELLGSNISESQLPQIKL 80