DK959473 |
Clone id |
TST39A01NGRL0004_M14 |
Library |
TST39 |
Length |
554 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_M14. 5' end sequence. |
Accession |
DK959473 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL24Contig1 |
Sequence |
GGGAGTCGCCGAAGGAACAGATCTTCGAGAAGACCACGGTCTTTCACCCTCTCCCGTGTA ATCTGTGAACCTGAAAAGAGCAATGGCATGCTTGACCACACCTTCTGATCTCTCATCAGC GAAGGTTGCTCCCGCCTCCCTTTCATGGCAGCAAACAGGAGCCCCGCGGCATCAAGTGAA GATTCCCCAGCAGGATACGACATCGCCGACCTTTGGCAGCTCTCCCGCGACGCCTTCTGA GAAAGGCGCAGGTGGAGGAGTTCTATGTGATCACATGGGAATCGCCAAAAGAACATATCT TCAAGATGCCAACTGGAGGAGCTGCGATCATGAGGTCAGGGCCAAATCTTTTGAAGCTTG CGAGGAAGGAGCAGTGCCTTGCCCTTGGCACCAAACTGCGTTCCAAGTTTAAAATTAATT ACCAGTTCTACCGAGTGTTTCCTAATGGCGAGGTGCAGTACCTTCATCCAAAAGACGGAC TATACCCCGAGAAAGTGAACCCCGGCCGCAAGGGTGATGGCGTGAACTTGCGCTCTATTG AGAGAGAATGTAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P12372 |
Definition |
sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum |
Align length |
99 |
Score (bit) |
189.0 |
E-value |
1.0e-47 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959473|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0004_M14, 5' (554 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, c... 189 1e-47 sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 186 5e-47 sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 186 5e-47 sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2... 185 1e-46 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1... 185 1e-46 sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c... 181 2e-45 sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c... 178 2e-44 sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, c... 152 1e-36 sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS... 144 4e-34 sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, c... 143 6e-34 sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS... 140 4e-33 sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS... 137 5e-32 sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS... 134 2e-31 sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS... 133 7e-31 sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS... 132 1e-30 sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS... 131 3e-30 sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS... 127 5e-29 sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS... 120 6e-27 sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS... 119 1e-26 sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS... 117 4e-26 sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS... 115 1e-25 sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS... 115 1e-25 sp|P0A421|PSAD_SYNEN Photosystem I reaction center subunit II OS... 115 1e-25 sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II OS... 114 3e-25 sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS... 111 2e-24 sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS... 102 1e-21 sp|Q5TM26|BAT2_MACMU Large proline-rich protein BAT2 OS=Macaca m... 37 0.065 sp|P48634|BAT2_HUMAN Large proline-rich protein BAT2 OS=Homo sap... 37 0.065 sp|Q8NQH1|THIED_CORGL Multifunctional protein thiED OS=Corynebac... 35 0.32 sp|Q68VR3|SYGA_RICTY Glycyl-tRNA synthetase alpha subunit OS=Ric... 33 0.71
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1 Length = 208
Score = 189 bits (479), Expect = 1e-47 Identities = 89/99 (89%), Positives = 94/99 (94%) Frame = +3
Query: 243 KAQVEEFYVITWESPKEHIFKMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINY 422 KAQVEEFYVITWESPKE IF+MPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KINY Sbjct: 91 KAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINY 150
Query: 423 QFYRVFPNGEVQYLHPKDGLYPEKVNPGRKGDGVNLRSI 539 QFYRVFPNGEVQYLHPKDG+YPEKVNPGR+G G N RSI Sbjct: 151 QFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSI 189
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2 Length = 212
Score = 186 bits (473), Expect = 5e-47 Identities = 87/99 (87%), Positives = 95/99 (95%) Frame = +3
Query: 243 KAQVEEFYVITWESPKEHIFKMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINY 422 KAQVEEFYVITWESPKE IF+MPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI Y Sbjct: 95 KAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKY 154
Query: 423 QFYRVFPNGEVQYLHPKDGLYPEKVNPGRKGDGVNLRSI 539 QFYRVFP+GEVQYLHPKDG+YPEKVNPGR+G G+N+RSI Sbjct: 155 QFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSI 193
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1 Length = 207
Score = 186 bits (473), Expect = 5e-47 Identities = 88/99 (88%), Positives = 93/99 (93%) Frame = +3
Query: 243 KAQVEEFYVITWESPKEHIFKMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINY 422 KAQVEEFYVITWESPKE IF+MPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI Y Sbjct: 90 KAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKY 149
Query: 423 QFYRVFPNGEVQYLHPKDGLYPEKVNPGRKGDGVNLRSI 539 QFYRVFPNGEVQYLHPKDG+YPEKVNPGR+G G N RSI Sbjct: 150 QFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSI 188
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1 Length = 204
Score = 185 bits (469), Expect = 1e-46 Identities = 86/99 (86%), Positives = 93/99 (93%) Frame = +3
Query: 243 KAQVEEFYVITWESPKEHIFKMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINY 422 KAQVEEFYVITW SPKE IF+MPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI Y Sbjct: 87 KAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITY 146
Query: 423 QFYRVFPNGEVQYLHPKDGLYPEKVNPGRKGDGVNLRSI 539 QFYRVFPNGEVQYLHPKDG+YPEK NPGR+G G+N+RSI Sbjct: 147 QFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSI 185
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1 Length = 208
Score = 185 bits (469), Expect = 1e-46 Identities = 86/99 (86%), Positives = 93/99 (93%) Frame = +3
Query: 243 KAQVEEFYVITWESPKEHIFKMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINY 422 KAQVEEFYVITW SPKE IF+MPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI Y Sbjct: 91 KAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITY 150
Query: 423 QFYRVFPNGEVQYLHPKDGLYPEKVNPGRKGDGVNLRSI 539 QFYRVFPNGEVQYLHPKDG+YPEK NPGR+G G+N+RSI Sbjct: 151 QFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSI 189
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1 Length = 204
Score = 181 bits (459), Expect = 2e-45 Identities = 86/99 (86%), Positives = 92/99 (92%) Frame = +3
Query: 243 KAQVEEFYVITWESPKEHIFKMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINY 422 KAQVEEFYVITWESPKE IF+MPTGGAAIMR G NLLKLARKEQCLALGT+LRSK+KINY Sbjct: 87 KAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINY 146
Query: 423 QFYRVFPNGEVQYLHPKDGLYPEKVNPGRKGDGVNLRSI 539 +FYRVFPNGEVQYLHPKDG+YPEKVN GR+G G N RSI Sbjct: 147 RFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSI 185
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1 Length = 205
Score = 178 bits (451), Expect = 2e-44 Identities = 84/99 (84%), Positives = 90/99 (90%) Frame = +3
Query: 243 KAQVEEFYVITWESPKEHIFKMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINY 422 KAQVEEFYVITW SPKE +F+MPTGGAAIMR GPNLLKLARKEQCLALG +LRSK+KI Y Sbjct: 88 KAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAY 147
Query: 423 QFYRVFPNGEVQYLHPKDGLYPEKVNPGRKGDGVNLRSI 539 QFYRVFPNGEVQYLHPKDG+YPEKVN GR+G G N RSI Sbjct: 148 QFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSI 186
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1 Length = 196
Score = 152 bits (384), Expect = 1e-36 Identities = 72/99 (72%), Positives = 82/99 (82%) Frame = +3
Query: 243 KAQVEEFYVITWESPKEHIFKMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINY 422 KAQ EEFYVITWE+ KE IF+MPTGGAAIMR GPNLLK +KEQCLAL T+LR+KFK+ Sbjct: 77 KAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTP 136
Query: 423 QFYRVFPNGEVQYLHPKDGLYPEKVNPGRKGDGVNLRSI 539 FYRVFP+G+VQYLHP DG+YPEKVN GR G N+R I Sbjct: 137 CFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRI 175
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1 Length = 141
Score = 144 bits (362), Expect = 4e-34 Identities = 67/93 (72%), Positives = 80/93 (86%), Gaps = 1/93 (1%) Frame = +3
Query: 246 AQVEEFYVITWESPKEHIFKMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKI-NY 422 A+ EE Y ITW SPKE +F+MPTGGAAIMR G NLL LARKEQCLALGT++++ FKI +Y Sbjct: 25 AETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDY 84
Query: 423 QFYRVFPNGEVQYLHPKDGLYPEKVNPGRKGDG 521 + YR+FP+GEVQYLHPKDG++PEKVNPGR G G Sbjct: 85 KIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVG 117
>sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1 Length = 220
Score = 143 bits (360), Expect = 6e-34 Identities = 67/100 (67%), Positives = 83/100 (83%), Gaps = 1/100 (1%) Frame = +3
Query: 243 KAQVEEFYVITWESPKEHIFKMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKI-N 419 KA+VEEFY ITW E +F++PTGGAAIMR+G NLL+LARKEQC+ALG +L+ KFKI + Sbjct: 98 KAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITD 157
Query: 420 YQFYRVFPNGEVQYLHPKDGLYPEKVNPGRKGDGVNLRSI 539 Y+ YRV+P+GEVQ+LHPKDG++PEKVNPGR G N R I Sbjct: 158 YKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVAVGSNKRRI 197
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NL03 |
Definition |
tr|A9NL03|A9NL03_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
99 |
Score (bit) |
190.0 |
E-value |
4.0e-47 |
Report |
|