BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959492|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_N10, 5'
         (332 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01923|RPOC2_SORBI DNA-directed RNA polymerase subunit beta''...    30   4.9  
sp|Q8KA28|FABB_BUCAP 3-oxoacyl-[acyl-carrier-protein] synthase 1...    30   4.9  
sp|Q6ENX1|RPOC2_SACOF DNA-directed RNA polymerase subunit beta''...    29   6.4  
sp|Q6L3A5|RPOC2_SACHY DNA-directed RNA polymerase subunit beta''...    29   6.4  
sp|P16025|RPOC2_MAIZE DNA-directed RNA polymerase subunit beta''...    29   6.4  

>sp|Q01923|RPOC2_SORBI DNA-directed RNA polymerase subunit beta''
            OS=Sorghum bicolor GN=rpoC2 PE=3 SV=2
          Length = 1520

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 168  N*IKRGDPRVEEKDVYASLDKDDEEGILLP*---FASSFYCTTHGQM 299
            N +K  +PR+  +DV+  L      G+++P    F+SS+Y  TH Q+
Sbjct: 1095 NAVKESNPRIPIRDVFGLL------GVIVPSISNFSSSYYLLTHNQI 1135


>sp|Q8KA28|FABB_BUCAP 3-oxoacyl-[acyl-carrier-protein] synthase 1
           OS=Buchnera aphidicola subsp. Schizaphis graminum
           GN=fabB PE=3 SV=1
          Length = 407

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 230 FVQRSINVFLLHPRVTSFNLISQTFHKNL 144
           F+  SIN+  + P   + N++ +TFHK +
Sbjct: 357 FIAPSINIETIEPSADNMNIVQKTFHKKI 385


>sp|Q6ENX1|RPOC2_SACOF DNA-directed RNA polymerase subunit beta''
            OS=Saccharum officinarum GN=rpoC2 PE=3 SV=1
          Length = 1534

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 168  N*IKRGDPRVEEKDVYASLDKDDEEGILLP*---FASSFYCTTHGQM 299
            N +K  +PR+  +D++  L      G+++P    F+SS+Y  TH Q+
Sbjct: 1109 NAVKESNPRIPIRDIFGLL------GVIVPSISNFSSSYYLLTHNQI 1149


>sp|Q6L3A5|RPOC2_SACHY DNA-directed RNA polymerase subunit beta''
            OS=Saccharum hybrid GN=rpoC2 PE=2 SV=2
          Length = 1534

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 168  N*IKRGDPRVEEKDVYASLDKDDEEGILLP*---FASSFYCTTHGQM 299
            N +K  +PR+  +D++  L      G+++P    F+SS+Y  TH Q+
Sbjct: 1109 NAVKESNPRIPIRDIFGLL------GVIVPSISNFSSSYYLLTHNQI 1149


>sp|P16025|RPOC2_MAIZE DNA-directed RNA polymerase subunit beta''
            OS=Zea mays GN=rpoC2 PE=3 SV=1
          Length = 1527

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 168  N*IKRGDPRVEEKDVYASLDKDDEEGILLP*---FASSFYCTTHGQM 299
            N +K  +PR+  +D++  L      G+++P    F+SS+Y  TH Q+
Sbjct: 1102 NAVKESNPRIPIRDIFGLL------GVIVPSISNFSSSYYLLTHNQI 1142

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959492|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_N10, 5'
         (332 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******