NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959493
Clone id TST39A01NGRL0004_N11
Library
Length 765
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_N11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATGAAGTCTGGTTTGATTCGAGGCTAATATTCGAATCTGATTCAGATGATGATTTCAAGT
CGGTGAATGGCGATTCATTGCCTTCAAGCTTTGGCTACTCTTACTCGAGCCAAGGAGCAC
CACGGCCAACCTTTTCATCTTTGAAAGAAAGGATGGAAGAACTGGTTCGAGAAAACGGTG
TACATGAAGCCCACTTTGTCCTACCTCAAAGTGGGCAAACCAGCCCAGAAGAGAAGAAAA
CACTGGGACAATTGTTCACTTTCAAGCTAGAAGGAGAGAAAAAGCCAGAAAGTGAAAATA
AGCATTCTGTTATGCCAAGGCAAGGATCAAAGAAGGGGTATCCTGATGATGCCGTCTCGC
AAAGATCATGCTTTCCTGGAATACTTCCATCCCTAGGCTCGGCCGAAAAGAAGTCACCGA
GTAGTCCAGCAGCTCAAAAAACGAAAACTTCCCAATCGTGGCTACCTTATCGGCTATGTG
CATCTTGATTCAAGGTGCTTTTGCGGTCTTTGAGCTTCTTTCTGTACCTAAATGTGAAAG
CCAGCTTAGTCAAGTGCAAATGCCTTGGGCATGAGCATGTTATGCGGTTTTGTATATGTA
CCTTACCTTAACAATGACTTCCAGAGGCTGAGGGCACCTGACTACTATCCTCATGGTCGA
TTGCCCTGCTATTGTATTCTGTATCAAACAGTCAATGTATCGACAACCTTATTGGAGTTA
TCAAGGGTGAAAGTTGGTAGAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9LK32
Definition sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabidopsis thaliana
Align length 97
Score (bit) 45.8
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959493|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_N11, 5'
         (740 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabi...    46   2e-04
sp|Q9NQV7|PRDM9_HUMAN Histone-lysine N-methyltransferase PRDM9 O...    32   4.7  
sp|Q99P84|PLCE1_RAT 1-phosphatidylinositol-4,5-bisphosphate phos...    31   6.2  
sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900 OS=Arabi...    31   8.1  

>sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210
           OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1
          Length = 234

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGDXXXXXXXXXXXXQGAPRPTFSSLKERMEELVRENGV 182
           E +FDS+   +SDSDDDF SVNGD               P+ +FS    R   L+     
Sbjct: 83  ETFFDSQPWLQSDSDDDFHSVNGDFTPSLG-------NTPKSSFSDRPPRFHNLI----- 130

Query: 183 HEAHFVLPQSGQTSP---EEKKTLGQLFTFKLEGEKK 284
              H   P  G +SP     +K LG+LF   +  E++
Sbjct: 131 --FHEKKPSRGSSSPAPLPRRKKLGELFRDSIREERE 165


>sp|Q9NQV7|PRDM9_HUMAN Histone-lysine N-methyltransferase PRDM9
           OS=Homo sapiens GN=PRDM9 PE=2 SV=2
          Length = 894

 Score = 31.6 bits (70), Expect = 4.7
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +3

Query: 111 QGAPRPTFS---SLKE--RMEELVRENGVHEAHFVLPQSGQTSPEEKKTLGQLFTFKLEG 275
           +G P+ +FS   SLKE  R   L+  +G  +A   +  SG+ S     T GQ    KLE 
Sbjct: 117 KGMPKASFSNESSLKELSRTANLLNASGSEQAQKPVSPSGEAS-----TSGQHSRLKLEL 171

Query: 276 EKKPESENKHSVMPRQG 326
            KK      +S+  R+G
Sbjct: 172 RKKETERKMYSLRERKG 188


>sp|Q99P84|PLCE1_RAT 1-phosphatidylinositol-4,5-bisphosphate
           phosphodiesterase epsilon-1 OS=Rattus norvegicus
           GN=Plce1 PE=1 SV=1
          Length = 2281

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 126 PTFSSLKERMEELVRENGVHEAHFVLPQSGQTSPEEKKTLGQLFTFKLEGEKKPESENKH 305
           P +SS +E +E +   +G       + Q+G  +PE++ T+  +F       +  E+E++ 
Sbjct: 725 PRYSSQEEALEFVADYSGQDNFLQRVGQNGLKNPEKELTVNSIFQIIRSCSRSLETEDEE 784

Query: 306 SVMPRQGSKK 335
           S     GS+K
Sbjct: 785 SASEGSGSRK 794


>sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900
           OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1
          Length = 644

 Score = 30.8 bits (68), Expect = 8.1
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = +3

Query: 198 VLPQSGQTSPEEKKTLGQLFTFKLEGEKKPESENKHSV----MPRQGSKKGYPDDAVSQR 365
           +L   G+    E+KTL      + E +K  ESE KH      M   G+K GY        
Sbjct: 294 LLSSVGEIKRGERKTLDNDEKIEREEQKNVESERKHDEVTEHMYADGTKWGY-------- 345

Query: 366 SCFPGILPSL 395
             +PGI PSL
Sbjct: 346 --YPGIEPSL 353
tr_hit_id B8BCE0
Definition tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 24
Score (bit) 40.8
E-value 0.094
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959493|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_N11, 5'
         (740 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.094
tr|Q2QN63|Q2QN63_ORYSJ Os12g0577600 protein OS=Oryza sativa subs...    39   0.27 
tr|B8BMP2|B8BMP2_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.27 
tr|A3CIS4|A3CIS4_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.27 
tr|B6UBW0|B6UBW0_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.36 
tr|Q9SLT5|Q9SLT5_ARATH CW14 protein (Putative uncharacterized pr...    38   0.61 
tr|B7FH33|B7FH33_MEDTR Putative uncharacterized protein OS=Medic...    38   0.61 
tr|A5BSP5|A5BSP5_VITVI Putative uncharacterized protein OS=Vitis...    37   1.0  
tr|A7PN08|A7PN08_VITVI Chromosome chr14 scaffold_21, whole genom...    35   4.0  
tr|Q5JJJ8|Q5JJJ8_ORYSJ cDNA clone:J023026C15, full insert sequen...    35   5.2  
tr|A2WYF6|A2WYF6_ORYSI Putative uncharacterized protein OS=Oryza...    35   5.2  
tr|Q9SY85|Q9SY85_ARATH F14N23.31 OS=Arabidopsis thaliana PE=4 SV=1     35   6.8  
tr|Q8LPT2|Q8LPT2_ARATH At1g10410/F14N23_31 OS=Arabidopsis thalia...    35   6.8  
tr|B6TYG3|B6TYG3_MAIZE Putative uncharacterized protein OS=Zea m...    35   6.8  
tr|B6T898|B6T898_MAIZE Putative uncharacterized protein OS=Zea m...    35   6.8  
tr|Q7URQ9|Q7URQ9_RHOBA Putative uncharacterized protein OS=Rhodo...    34   8.8  
tr|Q1PDP3|Q1PDP3_ARATH Putative uncharacterized protein OS=Arabi...    34   8.8  
tr|A0MFL1|A0MFL1_ARATH Putative uncharacterized protein (Fragmen...    34   8.8  

>tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29876 PE=4 SV=1
          Length = 542

 Score = 40.8 bits (94), Expect = 0.094
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGD 74
           + WFDS  I E DSDD+FKSVNGD
Sbjct: 96  DAWFDSVSILEDDSDDEFKSVNGD 119


>tr|Q2QN63|Q2QN63_ORYSJ Os12g0577600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0577600 PE=4 SV=1
          Length = 565

 Score = 39.3 bits (90), Expect = 0.27
 Identities = 17/24 (70%), Positives = 18/24 (75%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGD 74
           E WFDS  I  SDSD+DF SVNGD
Sbjct: 86  EAWFDSLSILGSDSDEDFSSVNGD 109


>tr|B8BMP2|B8BMP2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38863 PE=4 SV=1
          Length = 566

 Score = 39.3 bits (90), Expect = 0.27
 Identities = 17/24 (70%), Positives = 18/24 (75%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGD 74
           E WFDS  I  SDSD+DF SVNGD
Sbjct: 86  EAWFDSLSILGSDSDEDFSSVNGD 109


>tr|A3CIS4|A3CIS4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035196 PE=4 SV=1
          Length = 543

 Score = 39.3 bits (90), Expect = 0.27
 Identities = 17/24 (70%), Positives = 18/24 (75%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGD 74
           E WFDS  I  SDSD+DF SVNGD
Sbjct: 86  EAWFDSLSILGSDSDEDFSSVNGD 109


>tr|B6UBW0|B6UBW0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 559

 Score = 38.9 bits (89), Expect = 0.36
 Identities = 17/24 (70%), Positives = 18/24 (75%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGD 74
           E WFDS  I  SDSD+DF SVNGD
Sbjct: 92  EAWFDSVSILGSDSDEDFSSVNGD 115


>tr|Q9SLT5|Q9SLT5_ARATH CW14 protein (Putative uncharacterized
           protein At1g59650) (T30E16.22) OS=Arabidopsis thaliana
           GN=CW14 PE=1 SV=1
          Length = 492

 Score = 38.1 bits (87), Expect = 0.61
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGD 74
           E WFDS L FE+D DDDF SV  D
Sbjct: 58  EAWFDSNLAFETDCDDDFHSVQED 81


>tr|B7FH33|B7FH33_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 190

 Score = 38.1 bits (87), Expect = 0.61
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGDXXXXXXXXXXXXQ-GAPRPTFSSLKERMEELVRENG 179
           E +FDS+   +SD +DDF SVNGD              G P    +S + R         
Sbjct: 68  EAFFDSKAWIDSDCEDDFYSVNGDFTPSRGNTPIHHAFGTPGVNKASSRNRTS------- 120

Query: 180 VHEAHFVLPQSGQTSPEEKKTLGQLF--TFKLEGEKKPESENKHSVMPR 320
                   P   ++SP++KK L +LF  + K   +   +  NK +  PR
Sbjct: 121 --------PSPSESSPDKKKKLLELFKDSVKDNQDDDVKKRNKRNHHPR 161


>tr|A5BSP5|A5BSP5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001040 PE=4 SV=1
          Length = 535

 Score = 37.4 bits (85), Expect = 1.0
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGD 74
           EVWFD  ++FESD DDDF S+  D
Sbjct: 64  EVWFDPVMVFESDLDDDFYSIQED 87


>tr|A7PN08|A7PN08_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021019001
           PE=4 SV=1
          Length = 564

 Score = 35.4 bits (80), Expect = 4.0
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGD 74
           E WFD+  I +S+SDD+F SV+GD
Sbjct: 100 EAWFDTVSILDSESDDEFTSVHGD 123


>tr|Q5JJJ8|Q5JJJ8_ORYSJ cDNA clone:J023026C15, full insert sequence
           OS=Oryza sativa subsp. japonica GN=B1793G04.5 PE=2 SV=1
          Length = 231

 Score = 35.0 bits (79), Expect = 5.2
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +3

Query: 3   EVWFDSRLIFESDSDDDFKSVNGD 74
           E++FDSR   +SD +DDF SVNGD
Sbjct: 68  EMFFDSRAWLDSDCEDDFYSVNGD 91