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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959538
Clone id TST39A01NGRL0004_P12
Library
Length 626
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_P12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CATGCCTCGTCGAAGCGGCGGTGGAGGGCGTCCTGCTCCTCGCCCTGTGCGTAGTGCTCC
TCCTCCCTCTCGCAAGGCACCACCTCCTGCTCCTGCTCAACATGCCCCTCCACCAGCTCC
GGCGCCAAGTGGCGGTGGCTCCCTCCTTGGTGGCCTTGGAGCCACCATCGCTCAAGGAAT
GGCTTTTGGGACTGGAAGTGCCATTGCACACAGAGCTGTTGATGGGATAATGGGGCCGCG
AACTGTGACGCACGAGCATGCAACCCCTGATGCACCCGCTTCTGCAGCTTCCCCAAATCT
GACCACAGTTAGTGGGTCAGACGCGTGCACAAATCAGACTAAGTCCTTCCAAGATTGCAT
CAATGCTTATGGCAGTGACATTGGAAAGTGCCAATTCCACGTGGATATGCTAAATGAGTG
CCGCCGCGGACCATCATCATCAATGACTCTGTAATGCATGGAGGAGGGCAATGGAATAAA
AGTTAGTTGGAAGTAGTGAATGGAAAATATGGTTGGTCCTGTGGTGTGACTGAAATTTTA
TGGCAATCTATTCTGCCAGGGAGATTGAATCCTCAAATGGATTATTTTAGTAATTTGATT
TGATTCGTCTTGTGAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q14674
Definition sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens
Align length 96
Score (bit) 33.5
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959538|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_P12, 5'
         (614 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=2       33   0.89 
sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1    32   3.4  
sp|A2AJT4|SFR18_MOUSE Splicing factor, arginine/serine-rich 18 O...    31   4.4  
sp|Q10307|YD52_SCHPO Uncharacterized protein C6C3.02c OS=Schizos...    31   5.8  
sp|P48327|YCF51_CYAPA Uncharacterized protein ycf51 OS=Cyanophor...    30   9.8  
sp|Q9SQV1|RH40_ARATH Probable DEAD-box ATP-dependent RNA helicas...    30   9.8  
sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1       30   9.8  

>sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=2
          Length = 2120

 Score = 33.5 bits (75), Expect = 0.89
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = -2

Query: 361  DAILEGLSLICARV*PTNCGQIWGSCRSGCIRGCMLVRHSSRPHYPINSSVCNGTSSPKS 182
            ++  E L+LI + V  T C     + + G +   +L+    +   P++  +  G +    
Sbjct: 1693 ESFQERLALIPSGV--TVCVLALATLQPGTVGNTLLLTRLEKDSPPVSVQIPTGQNKLHL 1750

Query: 181  HSLS---DGGSKATKEGATATWRRSWWRGMLSRSRR 83
             S+    D   KA KE ++ T +R WW G L+   R
Sbjct: 1751 RSVLNEFDAIQKAQKENSSCTDKREWWTGRLALDHR 1786


>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
          Length = 5255

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 313 TNC--GQIWGSCRSGCIRGCMLVRHSSRPHYPINSSVC-NGTSSPKSHSLSDGG 161
           T C  GQ++  C S C R C  +R       P   ++C +G + P+   L DGG
Sbjct: 807 TQCRGGQVYQECSSPCGRTCADLRLDGASSCPSLDNICVSGCNCPEGPVLDDGG 860


>sp|A2AJT4|SFR18_MOUSE Splicing factor, arginine/serine-rich 18
           OS=Mus musculus GN=Sfrs18 PE=2 SV=1
          Length = 805

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = -2

Query: 286 CRSGCIRGCMLVRHSSRPHYPINSSVCNGTSSPKSHSLSDGGSKATKEGATATWRRSWWR 107
           CRSG I    ++RH SR       S  N T   K HS SD   +++ E   ++  +   +
Sbjct: 722 CRSGSI-SVKVIRHDSR-----QDSKKNATKDSKRHSGSDSSGRSSSESPGSSKEKKAKK 775

Query: 106 GMLSRSR 86
              SRSR
Sbjct: 776 PKHSRSR 782


>sp|Q10307|YD52_SCHPO Uncharacterized protein C6C3.02c
           OS=Schizosaccharomyces pombe GN=SPAC6C3.02c PE=2 SV=1
          Length = 172

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 320 DACTNQTKSFQDCINAYGSDIGKCQFHVDMLNECR 424
           +AC    K F DCIN +  +  +C ++++ L  C+
Sbjct: 133 NACKGDAKMFADCINEH--EFSQCSYYLEQLKACQ 165


>sp|P48327|YCF51_CYAPA Uncharacterized protein ycf51 OS=Cyanophora
           paradoxa GN=ycf51 PE=3 SV=1
          Length = 163

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -3

Query: 558 WQNRLP*NFSHTTGPTIFSIHYFQLTFIP-----LPSSMHYRVIDDDGPRRHSFSIST 400
           W+NR       T+   + +I +F  TF+P     +P +  Y+V+ DDG  +   ++S+
Sbjct: 30  WKNRFQ-FIGVTSFSALLTISFFVFTFVPFTHKLIPGAEKYKVVFDDGANQIVIAVSS 86


>sp|Q9SQV1|RH40_ARATH Probable DEAD-box ATP-dependent RNA helicase
           40 OS=Arabidopsis thaliana GN=RH40 PE=3 SV=1
          Length = 1088

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -1

Query: 269 QGLHARASQFAAPLSHQQLCVQWHFQSQKPFLERWWLQGH----QGGSHRHLAP 120
           QG+  + SQ    LSHQ    Q H+   +P ++   LQ      QGG H    P
Sbjct: 159 QGMQNQHSQMPQQLSHQYAHSQQHYMGFRPHMQTQGLQNSHQTPQGGPHGQQFP 212


>sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1
          Length = 2118

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = -2

Query: 361  DAILEGLSLICARV*PTNCGQIWGSCRSGCIRGCMLVRHSSRPHYPINSSVCNGTSS-PK 185
            ++  E L+LI + V  T C     + + G +   +L+    + + PI   +    +  P 
Sbjct: 1689 ESFQERLALIPSGV--TVCVLALATLQPGTLSNTLLLTRLEKDNPPITVKIPTAQNKLPL 1746

Query: 184  SHSLS--DGGSKATKEGATATWRRSWWRGMLSRSRR 83
            S  L   D   K  KE ++ T +R WW G L+  +R
Sbjct: 1747 SAVLKEFDAIQKDQKENSSCTEKRVWWTGRLALDQR 1782
tr_hit_id A9TBQ5
Definition tr|A9TBQ5|A9TBQ5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 94
Score (bit) 126.0
E-value 1.0e-27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959538|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_P12, 5'
         (614 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TBQ5|A9TBQ5_PHYPA Predicted protein OS=Physcomitrella paten...   126   1e-27
tr|A9NKP0|A9NKP0_PICSI Putative uncharacterized protein OS=Picea...   126   1e-27
tr|A9U335|A9U335_PHYPA Predicted protein OS=Physcomitrella paten...   124   6e-27
tr|Q9AUL2|Q9AUL2_ORYSA Putative uncharacterized protein OSJNBb00...   116   9e-25
tr|Q7XXS3|Q7XXS3_ORYSJ Os03g0685500 protein OS=Oryza sativa subs...   116   9e-25
tr|B8APK7|B8APK7_ORYSI Putative uncharacterized protein OS=Oryza...   116   9e-25
tr|A7QM14|A7QM14_VITVI Chromosome undetermined scaffold_123, who...   115   2e-24
tr|A9NS75|A9NS75_PICSI Putative uncharacterized protein OS=Picea...   115   3e-24
tr|A9NPP6|A9NPP6_PICSI Putative uncharacterized protein OS=Picea...   115   3e-24
tr|A9PDV5|A9PDV5_POPTR Putative uncharacterized protein OS=Popul...   112   1e-23
tr|B6TU93|B6TU93_MAIZE p8MTCP1 OS=Zea mays PE=4 SV=1                  111   3e-23
tr|B6TKB9|B6TKB9_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1                  111   3e-23
tr|B6SYU7|B6SYU7_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1                  111   3e-23
tr|A7NUJ9|A7NUJ9_VITVI Chromosome chr18 scaffold_1, whole genome...   110   5e-23
tr|A5BAI7|A5BAI7_VITVI Putative uncharacterized protein OS=Vitis...   110   5e-23
tr|A9PAP4|A9PAP4_POPTR Putative uncharacterized protein OS=Popul...   110   7e-23
tr|B6TMH9|B6TMH9_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1                  109   1e-22
tr|B4FQ38|B4FQ38_MAIZE Putative uncharacterized protein OS=Zea m...   109   1e-22
tr|B4FPU2|B4FPU2_MAIZE Putative uncharacterized protein OS=Zea m...   109   1e-22
tr|B6T269|B6T269_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1                  107   4e-22
tr|A5C8U7|A5C8U7_VITVI Putative uncharacterized protein (Fragmen...   107   7e-22
tr|A9RXK6|A9RXK6_PHYPA Predicted protein OS=Physcomitrella paten...   105   3e-21
tr|Q9FME9|Q9FME9_ARATH Emb|CAB89373.1 OS=Arabidopsis thaliana GN...   101   4e-20
tr|Q5YJM4|Q5YJM4_HYAOR Putative uncharacterized protein OS=Hyaci...    97   6e-19
tr|B6SJ12|B6SJ12_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1                   93   1e-17
tr|B6T1P5|B6T1P5_MAIZE p8MTCP1 OS=Zea mays PE=4 SV=1                   75   2e-16
tr|Q9LXC2|Q9LXC2_ARATH Putative uncharacterized protein F17I14_2...    89   3e-16
tr|A8J0Y5|A8J0Y5_CHLRE Predicted protein (Fragment) OS=Chlamydom...    84   7e-15
tr|Q2QLL3|Q2QLL3_ORYSJ Os12g0637900 protein OS=Oryza sativa subs...    64   9e-09
tr|A2ZN58|A2ZN58_ORYSI Putative uncharacterized protein OS=Oryza...    64   9e-09

>tr|A9TBQ5|A9TBQ5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169185 PE=4 SV=1
          Length = 142

 Score =  126 bits (316), Expect = 1e-27
 Identities = 59/94 (62%), Positives = 71/94 (75%)
 Frame = +2

Query: 164 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 343
           TIAQG+AFGTGSA+AHRAVD +MGPRTV HEH                VS +DAC NQ+K
Sbjct: 49  TIAQGLAFGTGSAVAHRAVDSVMGPRTVVHEHVGGQPDSGGQAPLAQPVS-ADACANQSK 107

Query: 344 SFQDCINAYGSDIGKCQFHVDMLNECRRGPSSSM 445
           +FQDC+NA  SDIG+CQF++DMLNECRRGP+ +M
Sbjct: 108 AFQDCVNANNSDIGRCQFYIDMLNECRRGPTQTM 141


>tr|A9NKP0|A9NKP0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 146

 Score =  126 bits (316), Expect = 1e-27
 Identities = 59/92 (64%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
 Frame = +2

Query: 164 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXX-NLTTVSGSDACTNQT 340
           TIAQG+AFGTGSAIAHRAVD ++GPRTV HE+A  +         ++  + G D+CTNQ 
Sbjct: 51  TIAQGVAFGTGSAIAHRAVDAVVGPRTVQHEYAPAETPAAQTGSLSVANMGGMDSCTNQA 110

Query: 341 KSFQDCINAYGSDIGKCQFHVDMLNECRRGPS 436
           K+FQDCI+ YGSDI KCQF+VDMLNECRRGP+
Sbjct: 111 KAFQDCISNYGSDISKCQFYVDMLNECRRGPA 142


>tr|A9U335|A9U335_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_155222 PE=4 SV=1
          Length = 139

 Score =  124 bits (310), Expect = 6e-27
 Identities = 59/94 (62%), Positives = 70/94 (74%)
 Frame = +2

Query: 164 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 343
           TIAQG+AFGTGSA+A+RAVD IMGPRTV HEH             L     +DAC NQ+K
Sbjct: 48  TIAQGLAFGTGSAVANRAVDSIMGPRTVVHEHIGASESGGQP---LAQPVSADACVNQSK 104

Query: 344 SFQDCINAYGSDIGKCQFHVDMLNECRRGPSSSM 445
           +FQDC+NA  SDIGKCQF++DMLNECRRGP+ +M
Sbjct: 105 AFQDCVNANNSDIGKCQFYIDMLNECRRGPAQTM 138


>tr|Q9AUL2|Q9AUL2_ORYSA Putative uncharacterized protein
           OSJNBb0072E24.9 OS=Oryza sativa GN=OSJNBb0072E24.9 PE=4
           SV=1
          Length = 138

 Score =  116 bits (291), Expect = 9e-25
 Identities = 55/93 (59%), Positives = 69/93 (74%)
 Frame = +2

Query: 164 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 343
           TIAQGMAFGTGSA+AHRAVD +MGPRT+ HE    +         +   + SD+C+  +K
Sbjct: 48  TIAQGMAFGTGSAMAHRAVDAVMGPRTIQHETVVSEAAASATP--MANATPSDSCSIHSK 105

Query: 344 SFQDCINAYGSDIGKCQFHVDMLNECRRGPSSS 442
           +FQDCIN YGSDI KCQF++DMLNECRRG +S+
Sbjct: 106 AFQDCINNYGSDISKCQFYLDMLNECRRGGASA 138


>tr|Q7XXS3|Q7XXS3_ORYSJ Os03g0685500 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0685500 PE=2 SV=1
          Length = 138

 Score =  116 bits (291), Expect = 9e-25
 Identities = 55/93 (59%), Positives = 69/93 (74%)
 Frame = +2

Query: 164 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 343
           TIAQGMAFGTGSA+AHRAVD +MGPRT+ HE    +         +   + SD+C+  +K
Sbjct: 48  TIAQGMAFGTGSAMAHRAVDAVMGPRTIQHETVVSEAAASATP--MANATPSDSCSIHSK 105

Query: 344 SFQDCINAYGSDIGKCQFHVDMLNECRRGPSSS 442
           +FQDCIN YGSDI KCQF++DMLNECRRG +S+
Sbjct: 106 AFQDCINNYGSDISKCQFYLDMLNECRRGGASA 138


>tr|B8APK7|B8APK7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13062 PE=4 SV=1
          Length = 126

 Score =  116 bits (291), Expect = 9e-25
 Identities = 55/93 (59%), Positives = 69/93 (74%)
 Frame = +2

Query: 164 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 343
           TIAQGMAFGTGSA+AHRAVD +MGPRT+ HE    +         +   + SD+C+  +K
Sbjct: 36  TIAQGMAFGTGSAMAHRAVDAVMGPRTIQHETVVSEAAASATP--MANATPSDSCSIHSK 93

Query: 344 SFQDCINAYGSDIGKCQFHVDMLNECRRGPSSS 442
           +FQDCIN YGSDI KCQF++DMLNECRRG +S+
Sbjct: 94  AFQDCINNYGSDISKCQFYLDMLNECRRGGASA 126


>tr|A7QM14|A7QM14_VITVI Chromosome undetermined scaffold_123, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00001871001 PE=4 SV=1
          Length = 145

 Score =  115 bits (289), Expect = 2e-24
 Identities = 54/94 (57%), Positives = 67/94 (71%)
 Frame = +2

Query: 164 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 343
           TIAQGMAFGTGSA+AHRAVD +MGPRT+ HE    +         +  V GSDAC   +K
Sbjct: 51  TIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVASEAAASSAP-TMNNVGGSDACNAHSK 109

Query: 344 SFQDCINAYGSDIGKCQFHVDMLNECRRGPSSSM 445
           +FQDC+N+ GSDI KCQF++DML+ECRR   S +
Sbjct: 110 AFQDCLNSSGSDISKCQFYMDMLSECRRNSGSML 143


>tr|A9NS75|A9NS75_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score =  115 bits (287), Expect = 3e-24
 Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = +2

Query: 164 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHE--HATPDXXXXXXXXNLTTVSGSDACTNQ 337
           TIA+G+AFGTGSAIAHRAVD  +GPRTV HE   A            ++ +SG D+C N 
Sbjct: 47  TIAEGVAFGTGSAIAHRAVDAFLGPRTVQHEVVQAEAPAAAQTSMPAMSNLSGKDSCGNH 106

Query: 338 TKSFQDCINAYGSDIGKCQFHVDMLNECRRGPSS 439
           +K+FQ+C+  YGSDIGKCQF++DMLNECRRG ++
Sbjct: 107 SKAFQECLTNYGSDIGKCQFYLDMLNECRRGSTT 140


>tr|A9NPP6|A9NPP6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score =  115 bits (287), Expect = 3e-24
 Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = +2

Query: 164 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHE--HATPDXXXXXXXXNLTTVSGSDACTNQ 337
           TIA+G+AFGTGSAIAHRAVD  +GPRTV HE   A            ++ +SG D+C N 
Sbjct: 47  TIAEGVAFGTGSAIAHRAVDAFLGPRTVQHEVVQAEAPAAAQTSMPAMSNLSGKDSCGNH 106

Query: 338 TKSFQDCINAYGSDIGKCQFHVDMLNECRRGPSS 439
           +K+FQ+C+  YGSDIGKCQF++DMLNECRRG ++
Sbjct: 107 SKAFQECLTNYGSDIGKCQFYLDMLNECRRGSAT 140


>tr|A9PDV5|A9PDV5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 146

 Score =  112 bits (281), Expect = 1e-23
 Identities = 51/94 (54%), Positives = 67/94 (71%)
 Frame = +2

Query: 164 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 343
           TIAQGMAFGTGSA+AHRAVD +MGPRT+ HE    +          +++ G+DAC   TK
Sbjct: 52  TIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVVSEAAAAAAP-TASSMGGADACNIHTK 110

Query: 344 SFQDCINAYGSDIGKCQFHVDMLNECRRGPSSSM 445
           +FQDC+N +G+DI KCQF++DML ECR+   S +
Sbjct: 111 AFQDCVNNFGNDISKCQFYMDMLTECRKNSGSML 144