NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959577
Clone id TST39A01NGRL0005_B06
Library
Length 635
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_B06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCCTATCTACCTCCTTCTACTTTTAGTCCTGCTCGTGCAGCTTCCTCACCTTCGAAGTCC
TAACCCTATCACGCAGAGCTTGCTCCTCACTGCGTCATCATCAGTTTCTACAGATCCGTC
GTTTCTCTGTGTCCGGCAGAAGATGCACTTCTTGGCATCTGGTCTTTTCTTACATAATGC
AGGGAAGCGAGCTAAATGGACAGCAAGAAATTTCTGCAGCTTGTCGAGGAGAAGAAAAAG
AGGGCCTTGGAGAAGAAGCAAGCTCGCCTAGAGTGGGAGGAGAGGCTTGAAGAGGCAGCA
AGGGTATCAAGCCGAGAGGAGAAACGAAGCCACAAGAAACATAAGAGAAGAGTGTCATCA
GACTCGTCTGTGGATGCAGAGCCCAATCGGAAGAGTGCTCGAAGGCACAAAAAGAAACGT
TCGTCTTCTGGGTCCTCTGATGATGATAGAGAGGGCCGGACTGAGAGAAAGTCTCATGTA
AAGCATAGAAGAAGAGGTTCAAGTACTGATTCAAGTGGCTCTGATTCGGATGGGGCTGGG
CACAGGTCACGACGAAGACATAGAANGAGACACAAAAGCTCGAGTCATGACTTGAGTGAC
CATAGTCATGATGAGGAGAGTGAAAGGAGGAGCAG
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959577|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_B06, 5'
         (635 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q38M44
Definition tr|Q38M44|Q38M44_SOLTU Putative uncharacterized protein OS=Solanum tuberosum
Align length 22
Score (bit) 42.4
E-value 0.024
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959577|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_B06, 5'
         (635 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q38M44|Q38M44_SOLTU Putative uncharacterized protein OS=Solan...    42   0.024
tr|A7P3H2|A7P3H2_VITVI Chromosome chr1 scaffold_5, whole genome ...    42   0.041
tr|Q9LGP3|Q9LGP3_ORYSJ cDNA clone:J013098B14, full insert sequen...    41   0.053
tr|A2WK25|A2WK25_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.053
tr|B6TJ99|B6TJ99_MAIZE Sarcoplasmic reticulum histidine-rich cal...    40   0.12 
tr|B4FPU5|B4FPU5_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.12 
tr|B6TJG2|B6TJG2_MAIZE Sarcoplasmic reticulum histidine-rich cal...    37   0.76 
tr|Q9SJV6|Q9SJV6_ARATH Expressed protein (At2g01100/F23H14.7) (P...    37   1.3  

>tr|Q38M44|Q38M44_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 265

 Score = 42.4 bits (98), Expect = 0.024
 Identities = 19/22 (86%), Positives = 22/22 (100%)
 Frame = +1

Query: 196 MDSKKFLQLVEEKKKRALEKKQ 261
           MD+KKF+QLVEEKKKRALEKK+
Sbjct: 1   MDAKKFMQLVEEKKKRALEKKE 22


>tr|A7P3H2|A7P3H2_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030442001
           PE=4 SV=1
          Length = 340

 Score = 41.6 bits (96), Expect = 0.041
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +1

Query: 196 MDSKKFLQLVEEKKKRALEKKQ 261
           MD KKF+QLVEEKKKRALEKK+
Sbjct: 1   MDCKKFIQLVEEKKKRALEKKE 22


>tr|Q9LGP3|Q9LGP3_ORYSJ cDNA clone:J013098B14, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0684C01.4 PE=2 SV=2
          Length = 285

 Score = 41.2 bits (95), Expect = 0.053
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +1

Query: 196 MDSKKFLQLVEEKKKRALEKKQ 261
           MDSKKFLQL+EEKKKR LEKK+
Sbjct: 1   MDSKKFLQLLEEKKKRILEKKE 22


>tr|A2WK25|A2WK25_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00168 PE=4 SV=1
          Length = 285

 Score = 41.2 bits (95), Expect = 0.053
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +1

Query: 196 MDSKKFLQLVEEKKKRALEKKQ 261
           MDSKKFLQL+EEKKKR LEKK+
Sbjct: 1   MDSKKFLQLLEEKKKRILEKKE 22


>tr|B6TJ99|B6TJ99_MAIZE Sarcoplasmic reticulum histidine-rich
           calcium-binding protein OS=Zea mays PE=2 SV=1
          Length = 275

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +1

Query: 196 MDSKKFLQLVEEKKKRALEKKQ 261
           MD+KKFLQLVEEKK+R LEKK+
Sbjct: 1   MDAKKFLQLVEEKKRRILEKKE 22


>tr|B4FPU5|B4FPU5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 275

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +1

Query: 196 MDSKKFLQLVEEKKKRALEKKQ 261
           MD+KKFLQLVEEKK+R LEKK+
Sbjct: 1   MDAKKFLQLVEEKKRRILEKKE 22


>tr|B6TJG2|B6TJG2_MAIZE Sarcoplasmic reticulum histidine-rich
           calcium-binding protein OS=Zea mays PE=2 SV=1
          Length = 247

 Score = 37.4 bits (85), Expect = 0.76
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +1

Query: 196 MDSKKFLQLVEEKKKRALEKKQ 261
           MD+K+FL LVEEKK+R LEKK+
Sbjct: 1   MDAKRFLHLVEEKKRRVLEKKE 22


>tr|Q9SJV6|Q9SJV6_ARATH Expressed protein (At2g01100/F23H14.7)
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At2g01100 PE=2 SV=1
          Length = 247

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = +1

Query: 196 MDSKKFLQLVEEKKKRALEKKQ 261
           MD KKF+Q+VEEKK+R LEK++
Sbjct: 1   MDCKKFIQMVEEKKRRVLEKQE 22