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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959610
Clone id TST39A01NGRL0005_C18
Library
Length 670
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_C18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGTGCCTGTGCATGCCGGAAGGGACAGGTGTACTATTGAGAAACTCAGCCGGGAAAGTT
GAGAAGACATTGCATGTTTACATATGCGATGATAAGTTGCATGTTTTCCGCTTTATGACA
AGTGGCTGATGCAGCGACATACTTTCCGATGACTTATTTACAGACATGTAGAGCCAAGGG
GGTTTGTGGTTTTGACAAGAAAAGGGCTACAAGGTTACGACTGGGCACGATTTCCCAGGC
AGATCTGGCCAGTGACCTTTTTACAAGTGGCCTATGTAATGGTCTTGCTATCATGAATGA
GTCAGGAAGAATGAGTATGCAGCATTGGGCCGGCTTCGACTGCTCTCACTTAAAAGATTG
TCTGAAGGATCACCCTGCAATGAAATTAATGGACATGGTGGCAGAGCGAGATGCTGCCGT
TGCGGTGCGTGATACAGCAATGGCAGAAAAGAAGACTGCTCTTGTTGAGAGGGATGCCGC
TTTCCTGCAAAGAGAGGTGGCATATGCTGATAGAACTGTAGCATTGAATGAGCGTGATGC
AGCATACGCAGTTCTTGCAATGATGAGAGTTGGAAAAGAAATAATGGACAGGGGATCCCA
ATGGCCGCCACTGGTCACGGAAAGAAACAGGATGGTAATAAGGAGACCCAGCGAATCACA
GCTGCAGGTC
■■Homology search results ■■ -
sp_hit_id Q9CBT5
Definition sp|Q9CBT5|SMC_MYCLE Chromosome partition protein smc OS=Mycobacterium leprae
Align length 64
Score (bit) 34.7
E-value 0.47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959610|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_C18, 5'
         (670 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CBT5|SMC_MYCLE Chromosome partition protein smc OS=Mycobact...    35   0.47 
sp|Q55G20|Y0216_DICDI Putative uncharacterized protein DDB_G0268...    32   3.0  
sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thal...    31   5.2  
sp|Q9YH95|PAX5_XENLA Paired box protein Pax-5 OS=Xenopus laevis ...    31   6.8  
sp|Q02650|PAX5_MOUSE Paired box protein Pax-5 OS=Mus musculus GN...    31   6.8  
sp|Q02548|PAX5_HUMAN Paired box protein Pax-5 OS=Homo sapiens GN...    31   6.8  
sp|Q21VY7|LFTR_RHOFD Leucyl/phenylalanyl-tRNA--protein transfera...    31   6.8  
sp|Q2HHB4|SDS23_CHAGB Protein SDS23 OS=Chaetomium globosum GN=SD...    30   8.9  
sp|Q8R2H1|IKBL1_RAT NF-kappa-B inhibitor-like protein 1 OS=Rattu...    30   8.9  

>sp|Q9CBT5|SMC_MYCLE Chromosome partition protein smc
           OS=Mycobacterium leprae GN=smc PE=3 SV=1
          Length = 1203

 Score = 34.7 bits (78), Expect = 0.47
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
 Frame = +2

Query: 485 LQREVAYADRT----VALNERDAAYAVLAMM----RVGKEIMDRGSQWPPLVTERNRMVI 640
           L  +VA++D T    VALNE D A  +L+M     R+G+E+    ++W  L+ +R  +  
Sbjct: 687 LSEQVAHSDATEQALVALNESDTA--ILSMYDQLGRLGQEVRAAEAEWESLLAQREELEA 744

Query: 641 RRPS 652
           RR S
Sbjct: 745 RRVS 748


>sp|Q55G20|Y0216_DICDI Putative uncharacterized protein DDB_G0268364
           OS=Dictyostelium discoideum GN=DDB_G0268364 PE=4 SV=1
          Length = 712

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -3

Query: 518 QFYQHMPPLFAGKRHPSQQEQSSFLPLLYHAPQRQHLALPPCPLISLQGDPSDNLLSESS 339
           Q YQ          H  QQ+QSS  P++    Q+Q L  PP PL+ ++  PS   L +  
Sbjct: 190 QQYQQQQHQQQHHHHHHQQQQSS--PIITRQQQKQLLLSPPPPLLQIE-TPSSPPLQQQQ 246

Query: 338 RSRP 327
           + +P
Sbjct: 247 QPQP 250


>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis
           thaliana GN=HDA15 PE=2 SV=1
          Length = 552

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 203 RATRLRLGTISQADLASDLFTSGLCNGLAIMNESG-RMSMQHWAGFDCSH 349
           RA RL  G  +  DLA+D+FT  + NG A++   G    ++H  GF C H
Sbjct: 243 RAARLAAGLCT--DLATDIFTGRVKNGFALVRPPGHHAGVRHAMGF-CLH 289


>sp|Q9YH95|PAX5_XENLA Paired box protein Pax-5 OS=Xenopus laevis
           GN=pax5 PE=2 SV=1
          Length = 388

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
 Frame = -1

Query: 655 FAGSPYYHP--VSFRDQWR-----PLGSPVHY 581
           F+GSPY HP   S+ D WR      LGSP +Y
Sbjct: 339 FSGSPYSHPQYSSYNDSWRFPNPGLLGSPYYY 370


>sp|Q02650|PAX5_MOUSE Paired box protein Pax-5 OS=Mus musculus
           GN=Pax5 PE=1 SV=1
          Length = 391

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
 Frame = -1

Query: 655 FAGSPYYHP--VSFRDQWR-----PLGSPVHY 581
           F+GSPY HP   S+ D WR      LGSP +Y
Sbjct: 341 FSGSPYSHPQYSSYNDSWRFPNPGLLGSPYYY 372


>sp|Q02548|PAX5_HUMAN Paired box protein Pax-5 OS=Homo sapiens
           GN=PAX5 PE=1 SV=1
          Length = 391

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
 Frame = -1

Query: 655 FAGSPYYHP--VSFRDQWR-----PLGSPVHY 581
           F+GSPY HP   S+ D WR      LGSP +Y
Sbjct: 341 FSGSPYSHPQYSSYNDSWRFPNPGLLGSPYYY 372


>sp|Q21VY7|LFTR_RHOFD Leucyl/phenylalanyl-tRNA--protein transferase
           OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
           BAA-621 / T118) GN=aat PE=3 SV=1
          Length = 254

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +2

Query: 101 MFSAL*QVADAATYFPMTYLQTCRAKGVCGFDKKRATRLRLGTISQADLASDLFTSGLCN 280
           MFS   +V+DA+       +  CR  GV   D ++ T   L ++   +++ DLF  GL  
Sbjct: 172 MFS---RVSDASKIALAALIGFCRHHGVKQIDCQQNTP-HLASLGAGEISRDLFLKGLAA 227

Query: 281 GLAIMNESGRMSMQHW 328
           GLA    +     + W
Sbjct: 228 GLAEAGPAWEFDRRFW 243


>sp|Q2HHB4|SDS23_CHAGB Protein SDS23 OS=Chaetomium globosum GN=SDS23
           PE=3 SV=1
          Length = 534

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 536 HAHSMLQFYQHMPPLFAGKRHPSQQEQSSFLPLLYHAPQRQH 411
           H  S  +  +H PP     RHPS  +Q + L L+ H P  +H
Sbjct: 48  HRQSFAENQRHPPPSPRNHRHPSLTQQ-ALLELMNHPPTNRH 88


>sp|Q8R2H1|IKBL1_RAT NF-kappa-B inhibitor-like protein 1 OS=Rattus
           norvegicus GN=Nfkbil1 PE=2 SV=2
          Length = 381

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -3

Query: 482 KRHPSQQEQSSFLPLLYHAPQRQHLALPPCPLISLQGDPS------DNLLSESSRSRPNA 321
           +RHP     +   P L+ A  R H A   C L+ L  DP+      D  L  ++R  PNA
Sbjct: 54  QRHPGLDVDAGQPPPLHRACAR-HDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPNA 112

Query: 320 AYSFFL 303
              FFL
Sbjct: 113 YTDFFL 118
tr_hit_id B8LNW9
Definition tr|B8LNW9|B8LNW9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 94
Score (bit) 61.6
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959610|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_C18, 5'
         (670 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LNW9|B8LNW9_PICSI Putative uncharacterized protein OS=Picea...    62   4e-08
tr|B4FYC0|B4FYC0_MAIZE GAGA-binding transcriptional activator OS...    52   3e-05
tr|Q5VSA8|Q5VSA8_ORYSJ Os06g0130600 protein OS=Oryza sativa subs...    51   6e-05
tr|A3B819|A3B819_ORYSJ Putative uncharacterized protein OS=Oryza...    51   6e-05
tr|B8LRA8|B8LRA8_PICSI Putative uncharacterized protein OS=Picea...    48   6e-04
tr|A2Y8V8|A2Y8V8_ORYSI Putative uncharacterized protein OS=Oryza...    47   8e-04
tr|A1E2T9|A1E2T9_MEDTR GAGA-binding transcriptional activator OS...    44   0.012
tr|Q0PWL2|Q0PWL2_CARPT GAGA-binding transcriptional activator OS...    42   0.046
tr|B2Z458|B2Z458_VITVI GAGA-binding transcriptional activator BB...    42   0.046
tr|Q9FIG5|Q9FIG5_ARATH Gb|AAF18661.1 OS=Arabidopsis thaliana PE=...    41   0.060
tr|Q8L999|Q8L999_ARATH Putative uncharacterized protein (GAGA-bi...    41   0.060
tr|Q2PQR5|Q2PQR5_OLIPU GAGA-binding transcriptional activator OS...    41   0.060
tr|A8MQZ4|A8MQZ4_ARATH Uncharacterized protein At5g42520.2 OS=Ar...    41   0.060
tr|A5A510|A5A510_BRARP GAGA-binding transcriptional activator OS...    41   0.078
tr|B2Z456|B2Z456_VITVI GAGA-binding transcriptional activator BB...    38   0.66 
tr|Q8S8C6|Q8S8C6_ARATH Expressed protein (Putative uncharacteriz...    36   2.5  
tr|Q6U1M9|Q6U1M9_ARATH Basic pentacysteine 4 OS=Arabidopsis thal...    36   2.5  
tr|A9PBI4|A9PBI4_POPTR Putative uncharacterized protein OS=Popul...    36   2.5  
tr|A8D193|A8D193_POPTR GAGA-motif binding transcriptional activa...    36   2.5  
tr|A9JRK9|A9JRK9_XENTR LOC100135093 protein OS=Xenopus tropicali...    35   4.2  
tr|B8ZRX4|B8ZRX4_MYCLE Possible cell division protein OS=Mycobac...    35   5.6  
tr|B3NL37|B3NL37_DROER GG21612 OS=Drosophila erecta GN=GG21612 P...    34   7.2  
tr|A9PJQ5|A9PJQ5_POPJC Putative uncharacterized protein OS=Popul...    34   7.3  
tr|Q9VXN1|Q9VXN1_DROME UBL3, isoform A OS=Drosophila melanogaste...    34   9.4  
tr|O97459|O97459_DROME HCG-1 OS=Drosophila melanogaster GN=UBL3 ...    34   9.4  
tr|B0NBG6|B0NBG6_EUBSP Putative uncharacterized protein OS=Clost...    34   9.5  

>tr|B8LNW9|B8LNW9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 313

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 34/94 (36%), Positives = 46/94 (48%)
 Frame = +2

Query: 293 MNESGRMSMQHWAGFDCSHLKDCLKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVER 472
           M++ GR+ ++HW       L+  +KDHP +K                     KK A  E+
Sbjct: 1   MDDDGRLDIRHW-----DTLEQSVKDHPGLKFMSVLAERDAAILERNTAFSEKKAAFAEK 55

Query: 473 DAAFLQREVAYADRTVALNERDAAYAVLAMMRVG 574
           + A  QR+VAYADR  A+ ERDAA A L   R G
Sbjct: 56  ETAIFQRDVAYADRNTAILERDAAAAALDYARDG 89


>tr|B4FYC0|B4FYC0_MAIZE GAGA-binding transcriptional activator
           OS=Zea mays PE=2 SV=1
          Length = 330

 Score = 52.4 bits (124), Expect = 3e-05
 Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +2

Query: 362 LKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVERDAAFLQREVAYADRTVALNERDA 541
           LKDH +M L                    KK A+ ERD AF QR+ A A+R  A+ ERD 
Sbjct: 31  LKDHQSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAAIVERDN 90

Query: 542 AYAVLAMMRVGKEIMDRGS---QWPPLVTERN 628
           A A L + R     M+ G+   Q PPL   +N
Sbjct: 91  ALAALELARTNGFNMNSGNGFHQGPPLNGTKN 122


>tr|Q5VSA8|Q5VSA8_ORYSJ Os06g0130600 protein OS=Oryza sativa subsp.
           japonica GN=P0493C11.7 PE=2 SV=1
          Length = 331

 Score = 51.2 bits (121), Expect = 6e-05
 Identities = 30/82 (36%), Positives = 39/82 (47%)
 Frame = +2

Query: 362 LKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVERDAAFLQREVAYADRTVALNERDA 541
           LKDH +M L                    KK A+ ERD AF QR+ A A+R  A+ ERD 
Sbjct: 33  LKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDN 92

Query: 542 AYAVLAMMRVGKEIMDRGSQWP 607
           A A L + R     M+ G+ +P
Sbjct: 93  ALAALELARTNGLNMNNGNGFP 114


>tr|A3B819|A3B819_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019191 PE=4 SV=1
          Length = 307

 Score = 51.2 bits (121), Expect = 6e-05
 Identities = 30/82 (36%), Positives = 39/82 (47%)
 Frame = +2

Query: 362 LKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVERDAAFLQREVAYADRTVALNERDA 541
           LKDH +M L                    KK A+ ERD AF QR+ A A+R  A+ ERD 
Sbjct: 33  LKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDN 92

Query: 542 AYAVLAMMRVGKEIMDRGSQWP 607
           A A L + R     M+ G+ +P
Sbjct: 93  ALAALELARTNGLNMNNGNGFP 114


>tr|B8LRA8|B8LRA8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 334

 Score = 47.8 bits (112), Expect = 6e-04
 Identities = 25/70 (35%), Positives = 36/70 (51%)
 Frame = +2

Query: 359 CLKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVERDAAFLQREVAYADRTVALNERD 538
           CLKD+  ++L                    KK A+ E++AA+ QR+ A+A R  A+ ERD
Sbjct: 22  CLKDYAMLRLISAKTERDAVIRERDKAIAEKKVAIAEKEAAYAQRDAAFAQRDEAIMERD 81

Query: 539 AAYAVLAMMR 568
           AA+A L   R
Sbjct: 82  AAFAALENAR 91


>tr|A2Y8V8|A2Y8V8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21488 PE=4 SV=1
          Length = 274

 Score = 47.4 bits (111), Expect = 8e-04
 Identities = 31/97 (31%), Positives = 39/97 (40%)
 Frame = +2

Query: 362 LKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVERDAAFLQREVAYADRTVALNERDA 541
           LKDH +M L                    KK A+ ERD AF QR+ A A+R  A+ ERD 
Sbjct: 33  LKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDN 92

Query: 542 AYAVLAMMRVGKEIMDRGSQWPPLVTERNRMVIRRPS 652
           A A L  +         G    P         ++RPS
Sbjct: 93  ALAALESIPYLNSSRSAGKAKRPKKNSSQASPLKRPS 129


>tr|A1E2T9|A1E2T9_MEDTR GAGA-binding transcriptional activator
           OS=Medicago truncatula GN=BBR/BPC6 PE=2 SV=1
          Length = 318

 Score = 43.5 bits (101), Expect = 0.012
 Identities = 23/36 (63%), Positives = 25/36 (69%)
 Frame = +2

Query: 449 KKTALVERDAAFLQREVAYADRTVALNERDAAYAVL 556
           KK AL ERD AFLQR+ A A+R  AL ERD A A L
Sbjct: 35  KKAALAERDMAFLQRDTAIAERNNALMERDNAIATL 70


>tr|Q0PWL2|Q0PWL2_CARPT GAGA-binding transcriptional activator
           OS=Cardamine pratensis GN=BBR/BPC6 PE=2 SV=1
          Length = 342

 Score = 41.6 bits (96), Expect = 0.046
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = +2

Query: 449 KKTALVERDAAFLQREVAYADRTVALNERDAAYAVL 556
           KK A+ ERD AFLQR+ A A+R  A+ ERD+A   L
Sbjct: 51  KKAAIAERDMAFLQRDTAIAERNNAIMERDSALTAL 86


>tr|B2Z458|B2Z458_VITVI GAGA-binding transcriptional activator
           BBR/BPC6-like OS=Vitis vinifera PE=2 SV=1
          Length = 337

 Score = 41.6 bits (96), Expect = 0.046
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = +2

Query: 449 KKTALVERDAAFLQREVAYADRTVALNERDAAYAVL 556
           KK A+ ERD AFLQR+ A A+R  A+ ERD A A L
Sbjct: 56  KKAAVAERDMAFLQRDTAIAERNNAIMERDNAIATL 91


>tr|Q9FIG5|Q9FIG5_ARATH Gb|AAF18661.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 301

 Score = 41.2 bits (95), Expect = 0.060
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = +2

Query: 449 KKTALVERDAAFLQREVAYADRTVALNERDAAYAVL 556
           KK A+ ERD AFLQR+ A A+R  A+ ERD+A   L
Sbjct: 52  KKAAVAERDMAFLQRDTAIAERNNAIMERDSALTAL 87