NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959629
Clone id TST39A01NGRL0005_D14
Library
Length 445
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_D14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TCCGCATTGGCGAGAGGTAGGGGATGCTACTGTATCAGCCAGAGGCGGTTCTTCTGAAGA
GGAAAGTGATGATGAGACATACAAGAAGCGGACCGTAGAACTGCAGCTACCAGAAACCCA
TGAGCAAGATGTGCCTGGGAACAAGAGCGAAAGTTTGGCTCCTTCGACATCTGTGGAGAA
AGAGGCAACTGTAAATACGATAGATGGGGCCTCGGCCTTGAATGAAAGCGGACAAAATCT
CTCTACGAGCTTCGGGTTTGTACCAAGGCGAAAGCGGAGGAGGAGAGAATCAAGGGGCAA
TGCCTCAGTGGCCAAAAACATTGAGCCATTACTGAAAGCTTCCTACGAGGACTCGACAGA
CCCATGTGAGCCTGGCGGTCTTGTTGAGGATGAGGATAATCACAAGGCTTCCACCAGCAC
AGGATGACTACAACTCTTCATCCTC
■■Homology search results ■■ -
sp_hit_id Q641I1
Definition sp|Q641I1|F135B_XENLA Protein FAM135B OS=Xenopus laevis
Align length 54
Score (bit) 32.0
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959629|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_D14, 5'
         (445 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q641I1|F135B_XENLA Protein FAM135B OS=Xenopus laevis GN=fam13...    32   1.2  
sp|P75353|Y121_MYCPN Uncharacterized protein MG202 homolog OS=My...    30   6.0  
sp|Q8N9V7|YC009_HUMAN Uncharacterized protein FLJ36157 OS=Homo s...    29   7.8  
sp|Q21UR3|RUMA_RHOFD 23S rRNA (uracil-5-)-methyltransferase rumA...    29   10.0 
sp|Q9GKY7|JPH2_RABIT Junctophilin-2 OS=Oryctolagus cuniculus GN=...    29   10.0 

>sp|Q641I1|F135B_XENLA Protein FAM135B OS=Xenopus laevis GN=fam135b
            PE=2 SV=1
          Length = 1376

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = +2

Query: 110  PETHEQDVPGNKSESLAPST--------SVEKEATVNTIDGASALNESGQNLST 247
            P  HE ++  +  ES+  S         S+EKE + N  DGAS L E+  +LST
Sbjct: 938  PVLHEIELSEDSVESIDQSIDNYYHELYSIEKEVSNNRTDGASELEETSASLST 991


>sp|P75353|Y121_MYCPN Uncharacterized protein MG202 homolog
           OS=Mycoplasma pneumoniae GN=MPN_121 PE=4 SV=1
          Length = 121

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
 Frame = +2

Query: 77  TYKKRTVELQLPETH----EQDVPGNKSESLAPSTSVEKEATVNTIDGASALNESGQNLS 244
           T K+RT+++++ E H    E+ +   K   L  ST+VE+   +  +    A +    NL+
Sbjct: 3   TNKRRTIQIEITEEHFKDLEKALEALKGTQLPFSTTVEQFVEL-ILSNYVATSNKISNLA 61

Query: 245 TSFGFVPXXXXXXXXXXGNASVAKN-----IEPLLKASYEDSTDPCEPGGLVEDEDNHKA 409
            S GF            G+A+ A +     ++ LLK S +  ++  +  G   D+DN+ +
Sbjct: 62  ES-GFDVASIQQELEKIGSAAGADDALKSFLDELLKTSQKSFSNTKD--GKKNDDDNNSS 118

Query: 410 STS 418
           S S
Sbjct: 119 SKS 121


>sp|Q8N9V7|YC009_HUMAN Uncharacterized protein FLJ36157 OS=Homo
           sapiens PE=2 SV=2
          Length = 1692

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
 Frame = +2

Query: 98  ELQLPETHEQDVPGNKSESLAPSTSVEKEA--TVNTIDGASALNESGQNLSTSFGFVPXX 271
           EL L E ++    G ++E+ +P   + K +  TV+ +D   ++ E+ +  ++S   V   
Sbjct: 357 ELMLQE-NQMIADGKEAETKSPLNVLRKVSHNTVSLMDHLLSVPETVEKETSSEHHV--- 412

Query: 272 XXXXXXXXGNASVAKNIEPLLKASYEDSTDPCEPGGLVEDED 397
                    NA   K IEPLLK   E++++P     +   ED
Sbjct: 413 ---------NAVFQKTIEPLLKEETENASEPLGYESMASKED 445


>sp|Q21UR3|RUMA_RHOFD 23S rRNA (uracil-5-)-methyltransferase rumA
           OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
           BAA-621 / T118) GN=rumA PE=3 SV=1
          Length = 477

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 209 PHLSYLQLPLSPQMSKEPNFRSCSQAHLAHGFLVAA-VLRSASCMSH 72
           PH+S L LPL   +S      +C Q  LA G  V A VLR    ++H
Sbjct: 176 PHVSDLLLPLRALISAMEAMETCPQIELACGDSVTALVLRHMEPLTH 222


>sp|Q9GKY7|JPH2_RABIT Junctophilin-2 OS=Oryctolagus cuniculus
           GN=JPH2 PE=2 SV=1
          Length = 694

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 213 RP*MKADKISLRASGLYQGE-SGGGENQGAMPQWPKTLSHY*KLPTRTRQTHVSLAVL 383
           RP   A K  L   G + GE SGG   +G+ P  P       + P R    H+++  L
Sbjct: 493 RPRPGASKDGLLGPGAWNGEPSGGSGGEGSRPATPAAAGAGRRSPARPASEHMAIEAL 550
tr_hit_id B6ICT1
Definition tr|B6ICT1|B6ICT1_ECOSE Putative uncharacterized protein OS=Escherichia coli (strain SE11)
Align length 27
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959629|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_D14, 5'
         (445 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6ICT1|B6ICT1_ECOSE Putative uncharacterized protein OS=Esche...    36   1.1  
tr|Q5KHT7|Q5KHT7_CRYNE Putative uncharacterized protein OS=Crypt...    35   1.8  
tr|A7E656|A7E656_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.1  

>tr|B6ICT1|B6ICT1_ECOSE Putative uncharacterized protein
           OS=Escherichia coli (strain SE11) GN=ECSE_P4-0010 PE=4
           SV=1
          Length = 138

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 428 VILCWWKPCDYPHPQQDRQA-HMGLSS 351
           +I+ WWKP D+PHP Q+  A  MG+SS
Sbjct: 55  LIIHWWKPYDWPHPSQESIAVRMGVSS 81


>tr|Q5KHT7|Q5KHT7_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBD1000 PE=4 SV=1
          Length = 1872

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
 Frame = +2

Query: 14  EVGDATVSARGGXXXXXXXXXTYKKRTVE--------LQLPETHEQDVPGNKSESLAPST 169
           EVG+A    RGG           ++R +E        +   E+    VP N  + LAP+T
Sbjct: 29  EVGEALEHGRGGTGVERRVHNQTRRRAMEGKKRQFNLISELESLGSSVPSNLFDLLAPTT 88

Query: 170 SVEKEAT--VNTIDGASALNESGQNLSTS 250
           S E   +  V++ D  S++  S Q ++TS
Sbjct: 89  STESSTSQLVSSADSTSSVQSSTQPVATS 117


>tr|A7E656|A7E656_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_00781 PE=4 SV=1
          Length = 551

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 113 ETHEQDVPGNKSESLAPSTSVEKEATVNTIDGASALNESGQNLSTSFGFVP 265
           +T +   PG    S +PS SV  +    T   ++   +SGQN  TS  + P
Sbjct: 282 DTSQMQAPGRAQHSASPSISVSSQTPSQTSPASNYPYQSGQNPQTSGSYFP 332