DK959635 |
Clone id |
TST39A01NGRL0005_D20 |
Library |
TST39 |
Length |
643 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_D20. 5' end sequence. |
Accession |
DK959635 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL897Contig1 |
Sequence |
GCTTGAGATCCAGCGCTGAGTAAAACGTGGAGATCCAGCGCCGGATATGGCTGCTGCTTT GTCGATGACCTGTGGCATTTGCCAAGCACAGCTGCGTAGCGTGGAAGAAGCGCAAGAACA TGCCGAGCTCACGGGCCACCCTTTTTTACCCCAGTCCATCGAGCCGGTTCTCAACCTTGT TTGCAGGACTTGTGGAAAGCCCTGCCGAACTAAGACGGAATGTGATCTACACACAAAGAG GACAGGACATGAAATGTTTGATGACAAAACAAATGAAACAGCCAAGCCCATCTCTCTAAC AGCCAAGGCAGAGGACGGGACCAGCGAGGTACAAGGCATGTCTAGTGCATCTGAGGATGT AGAGCTTGTTGATCCGGAGGTCAACAAACAAATGCTACAGGAATTGGAGGACATGGGATT TCCTCAAGCTCGTGCTGTTCGTGCCCTTTACTTTTCAGGCTCATCGTCAGTGGAAGCTGC TATTAATTGGGTCGTTGAGCACGAAAATGACCCAGACATAGACGAGATTCCACAGGTTCC AGCAACACAGGATATTTTGCAACATAACTATACTCCTGAAGAAGCCAAGGCCAAAATGCT GGAGCTACGTGAACGTGCTCGCAAGANAAAAGAGGAAGAAGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q499N6 |
Definition |
sp|Q499N6|UBXN1_RAT UBX domain-containing protein 1 OS=Rattus norvegicus |
Align length |
63 |
Score (bit) |
62.8 |
E-value |
1.0e-09 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TXD9 |
Definition |
tr|A9TXD9|A9TXD9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
182 |
Score (bit) |
219.0 |
E-value |
1.0e-55 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959635|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_D20, 5' (643 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TXD9|A9TXD9_PHYPA Predicted protein OS=Physcomitrella paten... 219 1e-55 tr|A7QHM4|A7QHM4_VITVI Chromosome chr5 scaffold_98, whole genome... 211 4e-53 tr|A9P9K4|A9P9K4_POPTR Putative uncharacterized protein OS=Popul... 204 3e-51 tr|Q9MAT3|Q9MAT3_ARATH F13M7.16 protein (Putative uncharacterize... 204 5e-51 tr|B8A0D7|B8A0D7_MAIZE Putative uncharacterized protein OS=Zea m... 203 8e-51 tr|B7FKV1|B7FKV1_MEDTR Putative uncharacterized protein OS=Medic... 198 2e-49 tr|B4G0G8|B4G0G8_MAIZE Putative uncharacterized protein OS=Zea m... 198 3e-49 tr|Q6K653|Q6K653_ORYSJ Os02g0504500 protein OS=Oryza sativa subs... 194 5e-48 tr|A2X559|A2X559_ORYSI Putative uncharacterized protein OS=Oryza... 192 1e-47 tr|A8HQH6|A8HQH6_CHLRE Predicted protein OS=Chlamydomonas reinha... 92 2e-17 tr|Q6ZKY4|Q6ZKY4_ORYSJ Putative uncharacterized protein OJ1014_E... 90 1e-16 tr|Q0J4A1|Q0J4A1_ORYSJ Os08g0526700 protein OS=Oryza sativa subs... 90 1e-16 tr|B8B8W1|B8B8W1_ORYSI Putative uncharacterized protein OS=Oryza... 90 1e-16 tr|A3BV21|A3BV21_ORYSJ Putative uncharacterized protein OS=Oryza... 90 1e-16 tr|B6TU29|B6TU29_MAIZE UBA/UBX 33.3 kDa protein OS=Zea mays PE=2... 86 1e-15 tr|A7R0U5|A7R0U5_VITVI Chromosome undetermined scaffold_323, who... 84 7e-15 tr|Q016D4|Q016D4_OSTTA Predicted ubiquitin regulatory protein (I... 83 2e-14 tr|A9XNL0|A9XNL0_9MYRT Ubiquitin associated (UBA)/TSN domain con... 78 5e-13 tr|A9XNK9|A9XNK9_9MYRT Ubiquitin associated (UBA)/TSN domain con... 77 7e-13 tr|A9XNK8|A9XNK8_9MYRT Ubiquitin associated (UBA)/TSN domain con... 77 1e-12 tr|A4RZF8|A4RZF8_OSTLU Predicted protein OS=Ostreococcus lucimar... 72 3e-11 tr|Q5XV09|Q5XV09_ARATH Putative uncharacterized protein OS=Arabi... 72 4e-11 tr|Q5XV08|Q5XV08_ARATH Putative uncharacterized protein OS=Arabi... 72 4e-11 tr|Q5AWA8|Q5AWA8_EMENI Ubiquitin carboxyl-terminal hydrolase OS=... 67 1e-09 tr|Q2UMH5|Q2UMH5_ASPOR Ubiquitin carboxyl-terminal hydrolase OS=... 60 9e-08 tr|B8NPH7|B8NPH7_ASPFL Ubiquitin C-terminal hydrolase, putative ... 60 9e-08 tr|B4DU88|B4DU88_HUMAN cDNA FLJ58945, highly similar to UBA/UBX ... 60 1e-07 tr|B4DNC6|B4DNC6_HUMAN cDNA FLJ58850, highly similar to UBA/UBX ... 60 1e-07 tr|A2QFL7|A2QFL7_ASPNC Ubiquitin carboxyl-terminal hydrolase OS=... 59 2e-07 tr|B6Q355|B6Q355_PENMA Ubiquitin hydrolase, putative OS=Penicill... 58 6e-07
>tr|A9TXD9|A9TXD9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_226386 PE=4 SV=1 Length = 409
Score = 219 bits (557), Expect = 1e-55 Identities = 113/182 (62%), Positives = 133/182 (73%), Gaps = 1/182 (0%) Frame = +2
Query: 53 AALSMTCGICQAQLRSVEEAQEHAELTGHPFLPQSIEPVLNLVCRTCGKPCRTKTECDLH 232 A LS+ CG C+A LR+ EEAQEHAELTGH +S + VLNL+C +CGKPCRT+TE DLH Sbjct: 2 AGLSLECGDCKALLRTTEEAQEHAELTGHKNFHESTQAVLNLICTSCGKPCRTQTEQDLH 61
Query: 233 TKRTGHEMFDDKTNETAKPISLTAKAEDGTSEVQGMSSASEDVELVDPEVNKQMLQELED 412 TKRTGH F DKT ETAKPI L K G S SA E+V PEVNK+ L ELE Sbjct: 62 TKRTGHADFADKTAETAKPIVLENKPVAGPSVSGEGGSAENAPEMVVPEVNKEALAELEA 121
Query: 413 MGFPQARAVRALYFSGSSSVEAAINWVVEHENDPDIDEIPQVPATQDI-LQHNYTPEEAK 589 MGFP AR+ RAL+F+GSS+VE A+NW+VEHENDPDIDE+P VP+ + +Q TPEEAK Sbjct: 122 MGFPTARSTRALHFTGSSNVETAVNWIVEHENDPDIDEMPLVPSDANTSIQSLLTPEEAK 181
Query: 590 AK 595 AK Sbjct: 182 AK 183
>tr|A7QHM4|A7QHM4_VITVI Chromosome chr5 scaffold_98, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00038843001 PE=4 SV=1 Length = 413
Score = 211 bits (536), Expect = 4e-53 Identities = 110/185 (59%), Positives = 136/185 (73%), Gaps = 4/185 (2%) Frame = +2
Query: 53 AALSMTCGICQAQLRSVEEAQEHAELTGHPFLPQSIEPVLNLVCRTCGKPCRTKTECDLH 232 A +S+ CG C A L+SVEEAQEHAELT H +S E VLNL+C C KPCR+KTE DLH Sbjct: 2 AGVSLKCGDCGALLKSVEEAQEHAELTSHSNFSESTEAVLNLICTICSKPCRSKTESDLH 61
Query: 233 TKRTGHEMFDDKTNETAKPISL-TAKAEDGTSEVQGMS-SASEDVELVDPEVNKQMLQEL 406 TKRTGH F DKT+E AKPISL KA D + EV S S+S+ E++ PEV+K++L+EL Sbjct: 62 TKRTGHTEFVDKTSEAAKPISLEVPKATDESQEVVDASGSSSQPQEMIAPEVDKKLLEEL 121
Query: 407 EDMGFPQARAVRALYFSGSSSVEAAINWVVEHENDPDIDEIPQVPATQDI--LQHNYTPE 580 E MGFP ARA RAL++SG++S+EAA+NWVVEHEND DIDE+P VP + + + TPE Sbjct: 122 EAMGFPTARATRALHYSGNTSLEAAVNWVVEHENDSDIDEMPLVPVNTKVEAPKPSLTPE 181
Query: 581 EAKAK 595 E K K Sbjct: 182 EMKIK 186
>tr|A9P9K4|A9P9K4_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 415
Score = 204 bits (520), Expect = 3e-51 Identities = 106/187 (56%), Positives = 130/187 (69%), Gaps = 6/187 (3%) Frame = +2
Query: 53 AALSMTCGICQAQLRSVEEAQEHAELTGHPFLPQSIEPVLNLVCRTCGKPCRTKTECDLH 232 A +S+ CG C A L+SV+EAQ+HAELT H +S E VLNLVC TCGKPCR+KTE DLH Sbjct: 2 AGVSLKCGDCGALLKSVQEAQDHAELTSHSNFSESTEAVLNLVCTTCGKPCRSKTESDLH 61
Query: 233 TKRTGHEMFDDKTNETAKPISL----TAKAEDGTSEVQGMSSASEDVELVDPEVNKQMLQ 400 TKRTGH F DKT E KPISL A + S+ S+ E+V PEV+K++L Sbjct: 62 TKRTGHTEFADKTAEVTKPISLEVPKAAAMDIDVPAAADASTTSQPEEMVAPEVDKKILD 121
Query: 401 ELEDMGFPQARAVRALYFSGSSSVEAAINWVVEHENDPDIDEIPQVPATQDI--LQHNYT 574 ELE MGFP ARA RAL++SG++S+EAA+NWVVEHENDPDIDE+P V + + + T Sbjct: 122 ELEAMGFPTARATRALHYSGNASLEAAVNWVVEHENDPDIDEMPMVSINSKVEAPKPSLT 181
Query: 575 PEEAKAK 595 PEE K K Sbjct: 182 PEEMKQK 188
>tr|Q9MAT3|Q9MAT3_ARATH F13M7.16 protein (Putative uncharacterized protein At1g04850) (Putative uncharacterized protein) (Putative uncharacterized protein F13M7.16) OS=Arabidopsis thaliana GN=At1g04850 PE=2 SV=1 Length = 413
Score = 204 bits (518), Expect = 5e-51 Identities = 106/185 (57%), Positives = 132/185 (71%), Gaps = 4/185 (2%) Frame = +2
Query: 53 AALSMTCGICQAQLRSVEEAQEHAELTGHPFLPQSIEPVLNLVCRTCGKPCRTKTECDLH 232 A +S+ CG C L+SVEEAQEHAELT H +S E VLNLVC TC KPCR+K E DLH Sbjct: 2 AGVSLKCGDCGTLLKSVEEAQEHAELTSHSNFAESTEAVLNLVCTTCTKPCRSKIESDLH 61
Query: 233 TKRTGHEMFDDKTNETAKPISLTAK--AEDGTSEVQGMSSASEDVELVDPEVNKQMLQEL 406 TKRTGH F DKT ET KPISL A A + G A+E E+V P+V+ +L+EL Sbjct: 62 TKRTGHTEFVDKTLETIKPISLEAPKVAMEIDDNASGSGEAAE--EMVVPDVDNNILEEL 119
Query: 407 EDMGFPQARAVRALYFSGSSSVEAAINWVVEHENDPDIDEIPQVPATQDI--LQHNYTPE 580 E MGFP+ARA RAL++SG++S+EAA+NWVVEHENDPD+DE+P+VP+ ++ + TPE Sbjct: 120 EAMGFPKARATRALHYSGNASLEAAVNWVVEHENDPDVDEMPKVPSNSNVGPAKPALTPE 179
Query: 581 EAKAK 595 E K K Sbjct: 180 EVKLK 184
>tr|B8A0D7|B8A0D7_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 416
Score = 203 bits (516), Expect = 8e-51 Identities = 108/187 (57%), Positives = 130/187 (69%), Gaps = 6/187 (3%) Frame = +2
Query: 53 AALSMTCGICQAQLRSVEEAQEHAELTGHPFLPQSIEPVLNLVCRTCGKPCRTKTECDLH 232 A LS+ CG C AQLRSVEEAQ HAE T H +S E VLNLVC CGKPCR+ TE DLH Sbjct: 2 AGLSLRCGDCGAQLRSVEEAQAHAESTNHANFVESTEAVLNLVCSNCGKPCRSHTEVDLH 61
Query: 233 TKRTGHEMFDDKTNETAKPISLTA---KAEDGTSEVQGMSSASEDV-ELVDPEVNKQMLQ 400 TKRTGH F DKT E AKPI L A A D ++V +SA+E+ E V PEVNK++L Sbjct: 62 TKRTGHTEFADKTAEAAKPIDLEAPLKPASDDATDVDASASATEETQETVVPEVNKEVLT 121
Query: 401 ELEDMGFPQARAVRALYFSGSSSVEAAINWVVEHENDPDIDEIPQVPATQ--DILQHNYT 574 +LE MGF ARA RAL+FSG+S++E AINW+ EH+ D DIDE+P VPA ++ + + T Sbjct: 122 DLEGMGFSTARATRALHFSGNSTIECAINWLSEHQEDADIDEMPLVPANSKTEVNKPSLT 181
Query: 575 PEEAKAK 595 PEE K K Sbjct: 182 PEEMKIK 188
>tr|B7FKV1|B7FKV1_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 408
Score = 198 bits (504), Expect = 2e-49 Identities = 103/182 (56%), Positives = 126/182 (69%), Gaps = 2/182 (1%) Frame = +2
Query: 53 AALSMTCGICQAQLRSVEEAQEHAELTGHPFLPQSIEPVLNLVCRTCGKPCRTKTECDLH 232 A +S+ CG C L+SVEEAQEHAELT H +S EPVLNLVC TC KPCR+KTE DLH Sbjct: 2 AGVSLQCGDCGTLLKSVEEAQEHAELTSHSNFSESTEPVLNLVCSTCSKPCRSKTESDLH 61
Query: 233 TKRTGHEMFDDKTNETAKPISLTAKAEDGTSEVQGMSSASEDVELVDPEVNKQMLQELED 412 TKRTGH F DKT E AKPISL + G SE Q ++ + E+V P+V+K++L+ELE Sbjct: 62 TKRTGHTEFSDKTAEAAKPISL--EVPKGNSESQEGGTSDPNEEMVVPDVDKKLLEELES 119
Query: 413 MGFPQARAVRALYFSGSSSVEAAINWVVEHENDPDIDEIPQVPATQ--DILQHNYTPEEA 586 MGF ARA RAL+FSG++S+EAA W+ HEN PDIDE+P V A + + TPEE Sbjct: 120 MGFSTARATRALHFSGNTSLEAAATWIENHENTPDIDEMPLVSAVSKAKASKPSLTPEET 179
Query: 587 KA 592 A Sbjct: 180 NA 181
>tr|B4G0G8|B4G0G8_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 416
Score = 198 bits (503), Expect = 3e-49 Identities = 106/188 (56%), Positives = 129/188 (68%), Gaps = 7/188 (3%) Frame = +2
Query: 53 AALSMTCGICQAQLRSVEEAQEHAELTGHPFLPQSIEPVLNLVCRTCGKPCRTKTECDLH 232 A LS+ CG C AQLRSVEEAQ HAE T H +S E VLN VC CGKPCR++TE DLH Sbjct: 2 AGLSLLCGDCGAQLRSVEEAQAHAEATNHANFVESTEAVLNFVCSDCGKPCRSQTEVDLH 61
Query: 233 TKRTGHEMFDDKTNETAKPISLTAKAEDGTSEVQGM----SSASEDVELVDPEVNKQMLQ 400 TKRTGH F DKT E AKPI L A + + +V + S++ E E+V PEVNK+ML Sbjct: 62 TKRTGHTEFADKTAEAAKPIDLEAPLKPASEDVMDVDTSASASGEPQEMVVPEVNKEMLT 121
Query: 401 ELEDMGFPQARAVRALYFSGSSSVEAAINWVVEHENDPDIDEIPQVPA---TQDILQHNY 571 +LE MGF ARA R L+FSG+S++E AINW+ EH+ D DIDE+P VPA T+D + + Sbjct: 122 DLEGMGFSTARATRVLHFSGNSTIEGAINWLSEHQEDIDIDEMPLVPANSKTED-NKPSL 180
Query: 572 TPEEAKAK 595 TPEE K K Sbjct: 181 TPEEMKIK 188
>tr|Q6K653|Q6K653_ORYSJ Os02g0504500 protein OS=Oryza sativa subsp. japonica GN=OJ1003_F04.28 PE=2 SV=1 Length = 414
Score = 194 bits (492), Expect = 5e-48 Identities = 103/185 (55%), Positives = 124/185 (67%), Gaps = 4/185 (2%) Frame = +2
Query: 53 AALSMTCGICQAQLRSVEEAQEHAELTGHPFLPQSIEPVLNLVCRTCGKPCRTKTECDLH 232 A LS+ CG C LRSVEEAQ HAE T H +S E VLNLVC CGKPCR++TE DLH Sbjct: 2 AGLSLRCGDCGVLLRSVEEAQAHAEATNHANFSESTEAVLNLVCAACGKPCRSQTEVDLH 61
Query: 233 TKRTGHEMFDDKTNETAKPISLTAKAEDGTSEVQGM--SSASEDVELVDPEVNKQMLQEL 406 TKRTGH F DKT E AKPI L A E + S+++E E+V PEVNK+ML +L Sbjct: 62 TKRTGHTEFTDKTMEAAKPIDLEAAPPKPAGEAMDVDASASAEPQEMVAPEVNKEMLADL 121
Query: 407 EDMGFPQARAVRALYFSGSSSVEAAINWVVEHENDPDIDEIPQVPAT--QDILQHNYTPE 580 E MGF ARA RAL+FSG+S++E AINW+ EH+ DPDIDE VPA + + + +PE Sbjct: 122 EAMGFTTARATRALHFSGNSTIEGAINWLSEHQEDPDIDEPLLVPANTITEANKPSLSPE 181
Query: 581 EAKAK 595 E K K Sbjct: 182 EMKIK 186
>tr|A2X559|A2X559_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07335 PE=4 SV=1 Length = 414
Score = 192 bits (488), Expect = 1e-47 Identities = 102/185 (55%), Positives = 124/185 (67%), Gaps = 4/185 (2%) Frame = +2
Query: 53 AALSMTCGICQAQLRSVEEAQEHAELTGHPFLPQSIEPVLNLVCRTCGKPCRTKTECDLH 232 A LS+ CG C LRSVEEAQ HAE T H +S E VLNLVC CGKPCR++TE DLH Sbjct: 2 AGLSLRCGDCGVLLRSVEEAQAHAEATNHANFSESTEAVLNLVCAACGKPCRSQTEVDLH 61
Query: 233 TKRTGHEMFDDKTNETAKPISLTAKAEDGTSEVQGM--SSASEDVELVDPEVNKQMLQEL 406 TKRTGH F DKT E AKPI L A + + S+++E E+V PEVNK+ML +L Sbjct: 62 TKRTGHTEFTDKTMEAAKPIDLEAAPPKPAGKAMDVDASASAEPQEMVAPEVNKEMLADL 121
Query: 407 EDMGFPQARAVRALYFSGSSSVEAAINWVVEHENDPDIDEIPQVPAT--QDILQHNYTPE 580 E MGF ARA RAL+FSG+S++E AINW+ EH+ DPDIDE VPA + + + +PE Sbjct: 122 EAMGFTTARATRALHFSGNSTIEGAINWLSEHQEDPDIDEPLLVPANTITEANKPSLSPE 181
Query: 581 EAKAK 595 E K K Sbjct: 182 EMKIK 186
>tr|A8HQH6|A8HQH6_CHLRE Predicted protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_146539 PE=4 SV=1 Length = 418
Score = 92.4 bits (228), Expect = 2e-17 Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 32/147 (21%) Frame = +2
Query: 182 CRTCGKPCRTKTECDLHTKRTGHEMFDDKTNET--------------------------- 280 C TCGKPCRT E D+H + TGH + ++T + Sbjct: 3 CLTCGKPCRTDAEKDMHKRFTGHAEYAEQTEDAVINTEVEMKEAQDAMDDDADILRASLG 62
Query: 281 ----AKPISLTAKAEDGTSEVQGMSSASEDVELVDPEVNKQMLQELEDMGFPQARAVRAL 448 AKP + G + G + S E+V EV + +L+E+E+MGF + RA+RA+ Sbjct: 63 KPPKAKPKTEAGAEGGGAAGGSGEAGTSGSEEMVPAEVPENLLKEMEEMGFGRNRAIRAI 122
Query: 449 YFSGS-SSVEAAINWVVEHENDPDIDE 526 +FS + +SVEAA+NW+++H+ DP IDE Sbjct: 123 WFSKAVTSVEAAVNWLMDHDTDPGIDE 149
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