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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959641
Clone id TST39A01NGRL0005_E02
Library
Length 694
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_E02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGAAACTGCTGTTGGCCATGTCTGTTTCTTTGCGTGGACTATCCTACACTCATGGAGGTT
CTTCAGTAAACTTCTCCTCGACATCTGTATGCGGCTGTTCATGCGCGAGATTCTGCAAAC
TTCCCCTGTTTTAGCCATGGCACTGCTCCATTCATTTCGAGAGGCAGGCCATATGCGGCC
TGCTTACACATTCAAATTGACTAGCCTATCACCCATGAATAGGCAGCTCCATTCTCCTTA
TCTTCACAAATTCAACAGCTTTGCACTTCAAGTTAGACCCTCGTGGTGCCGCGTCACCTC
TTCGTCGTCTTCCTCGTCTGCCTTGGAAGCTTTTCAAAGGCTGTGGGAGGCAAGGGTTTC
TCCATCCCTGCATGCAATGGCGTCCCTTGCAGTGAGCCTCTCACATCTACTTTCAGCTCT
AGCTGTCTTCTTACATCAGAAGACAATGAAAGCAAAGGCTAGCAGTTCCTCACTTTGTCA
GCTATATGATCATGATGTCAACTCCTTGTTGGCAGAAAGCAATAGCAGTTTATTGAGGCG
GAGGCTCTCTGGCTGCTTTATGGAGCAGGGCGGGCTTGCTATGGCATTAATGAGCACTAC
GGCAATCGCAAAGGACCATATAAACCCTGTCATAGCGACATTGTGTGCGAATCCCACATT
CATGTCCGGACTTGTGGCATGGACCATTGCACAG
■■Homology search results ■■ -
sp_hit_id Q8R3L5
Definition sp|Q8R3L5|SO3A1_MOUSE Solute carrier organic anion transporter family member 3A1 OS=Mus musculus
Align length 38
Score (bit) 32.7
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959641|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_E02, 5'
         (694 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R3L5|SO3A1_MOUSE Solute carrier organic anion transporter f...    33   1.9  
sp|Q99N02|SO3A1_RAT Solute carrier organic anion transporter fam...    32   2.5  

>sp|Q8R3L5|SO3A1_MOUSE Solute carrier organic anion transporter
           family member 3A1 OS=Mus musculus GN=Slco3a1 PE=2 SV=1
          Length = 710

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 580 YGINEHYGNRKGPYKPCHSDIVCESHIHVRTCGMDHCT 693
           YG N   G+   PY PC+++  C++      CG D  T
Sbjct: 455 YGNNSARGSALDPYSPCNNNCECQTDSFTPVCGADGIT 492


>sp|Q99N02|SO3A1_RAT Solute carrier organic anion transporter family
           member 3A1 OS=Rattus norvegicus GN=Slco3a1 PE=2 SV=1
          Length = 710

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 580 YGINEHYGNRKGPYKPCHSDIVCESHIHVRTCGMDHCT 693
           YG N   G+   PY PC+++  C++      CG D  T
Sbjct: 455 YGNNSARGSPLDPYSPCNNNCECQTDSFTPVCGADGIT 492
tr_hit_id A9SDU9
Definition tr|A9SDU9|A9SDU9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 67.4
E-value 8.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959641|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_E02, 5'
         (694 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SDU9|A9SDU9_PHYPA Predicted protein OS=Physcomitrella paten...    67   8e-10
tr|A9SE32|A9SE32_PHYPA Predicted protein (Fragment) OS=Physcomit...    63   2e-08
tr|Q9M361|Q9M361_ARATH Putative uncharacterized protein F15G16.1...    55   4e-06
tr|Q8RXV2|Q8RXV2_ARATH Putative uncharacterized protein At3g6177...    55   4e-06
tr|A7QWD6|A7QWD6_VITVI Chromosome undetermined scaffold_203, who...    49   4e-04
tr|A5B2T6|A5B2T6_VITVI Putative uncharacterized protein OS=Vitis...    49   4e-04
tr|Q0DGG2|Q0DGG2_ORYSJ Os05g0534100 protein OS=Oryza sativa subs...    47   0.001
tr|A3B672|A3B672_ORYSJ Putative uncharacterized protein OS=Oryza...    47   0.001
tr|A2Y6V5|A2Y6V5_ORYSI Putative uncharacterized protein OS=Oryza...    47   0.001

>tr|A9SDU9|A9SDU9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_127948 PE=4 SV=1
          Length = 215

 Score = 67.4 bits (163), Expect = 8e-10
 Identities = 31/48 (64%), Positives = 38/48 (79%)
 Frame = +2

Query: 551 GCFMEQGGLAMALMSTTAIAKDHINPVIATLCANPTFMSGLVAWTIAQ 694
           G  ++QG L MAL+ST+ IA+D I+PV+ TL ANPTFMSGLVAW  AQ
Sbjct: 39  GALLQQGSLGMALLSTSMIARDRISPVLITLRANPTFMSGLVAWAFAQ 86


>tr|A9SE32|A9SE32_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_128229 PE=4 SV=1
          Length = 181

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/48 (60%), Positives = 36/48 (75%)
 Frame = +2

Query: 551 GCFMEQGGLAMALMSTTAIAKDHINPVIATLCANPTFMSGLVAWTIAQ 694
           G  + QG + MAL+S + IA+D I+PV+ TL  NPTFMSGLVAW IAQ
Sbjct: 5   GALLMQGSMGMALLSISMIARDRISPVLITLRTNPTFMSGLVAWAIAQ 52


>tr|Q9M361|Q9M361_ARATH Putative uncharacterized protein F15G16.160
           OS=Arabidopsis thaliana GN=F15G16.160 PE=4 SV=1
          Length = 197

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 27/48 (56%), Positives = 33/48 (68%)
 Frame = +2

Query: 551 GCFMEQGGLAMALMSTTAIAKDHINPVIATLCANPTFMSGLVAWTIAQ 694
           G     GGL +AL+S TA AK  I+P +ATL ANPTF+S +VAW  AQ
Sbjct: 20  GDLKHNGGLGIALLSVTASAKIKISPFVATLSANPTFVSAVVAWFFAQ 67


>tr|Q8RXV2|Q8RXV2_ARATH Putative uncharacterized protein At3g61770
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At3g61770 PE=2 SV=1
          Length = 284

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 27/48 (56%), Positives = 33/48 (68%)
 Frame = +2

Query: 551 GCFMEQGGLAMALMSTTAIAKDHINPVIATLCANPTFMSGLVAWTIAQ 694
           G     GGL +AL+S TA AK  I+P +ATL ANPTF+S +VAW  AQ
Sbjct: 107 GDLKHNGGLGIALLSVTASAKIKISPFVATLSANPTFVSAVVAWFFAQ 154


>tr|A7QWD6|A7QWD6_VITVI Chromosome undetermined scaffold_203, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008614001 PE=4 SV=1
          Length = 252

 Score = 48.5 bits (114), Expect = 4e-04
 Identities = 22/48 (45%), Positives = 31/48 (64%)
 Frame = +2

Query: 551 GCFMEQGGLAMALMSTTAIAKDHINPVIATLCANPTFMSGLVAWTIAQ 694
           G + + G   +AL+S T  AK   +P +ATL AN TF+SG+ AW +AQ
Sbjct: 75  GEYYQNGAFGVALLSLTTNAKVRFSPFLATLAANSTFVSGVFAWVVAQ 122


>tr|A5B2T6|A5B2T6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024312 PE=4 SV=1
          Length = 185

 Score = 48.5 bits (114), Expect = 4e-04
 Identities = 22/48 (45%), Positives = 31/48 (64%)
 Frame = +2

Query: 551 GCFMEQGGLAMALMSTTAIAKDHINPVIATLCANPTFMSGLVAWTIAQ 694
           G + + G   +AL+S T  AK   +P +ATL AN TF+SG+ AW +AQ
Sbjct: 8   GEYYQNGAFGVALLSLTTNAKVRFSPFLATLAANSTFVSGVFAWVVAQ 55


>tr|Q0DGG2|Q0DGG2_ORYSJ Os05g0534100 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0534100 PE=4 SV=1
          Length = 217

 Score = 47.0 bits (110), Expect = 0.001
 Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +2

Query: 587 LMSTTAIA--KDHINPVIATLCANPTFMSGLVAWTIAQ 694
           LMSTTA A  K   NP I  L ANPTF+SGLVAW +AQ
Sbjct: 102 LMSTTAAAVTKARENPYILALAANPTFVSGLVAWAVAQ 139


>tr|A3B672|A3B672_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018544 PE=4 SV=1
          Length = 269

 Score = 47.0 bits (110), Expect = 0.001
 Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +2

Query: 587 LMSTTAIA--KDHINPVIATLCANPTFMSGLVAWTIAQ 694
           LMSTTA A  K   NP I  L ANPTF+SGLVAW +AQ
Sbjct: 102 LMSTTAAAVTKARENPYILALAANPTFVSGLVAWAVAQ 139


>tr|A2Y6V5|A2Y6V5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20760 PE=4 SV=1
          Length = 269

 Score = 47.0 bits (110), Expect = 0.001
 Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +2

Query: 587 LMSTTAIA--KDHINPVIATLCANPTFMSGLVAWTIAQ 694
           LMSTTA A  K   NP I  L ANPTF+SGLVAW +AQ
Sbjct: 102 LMSTTAAAVTKARENPYILALAANPTFVSGLVAWAVAQ 139