DK959662 |
Clone id |
TST39A01NGRL0005_E23 |
Library |
TST39 |
Length |
686 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_E23. 5' end sequence. |
Accession |
DK959662 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL378Contig1 |
Sequence |
CGCCCCACAAACCCAGCACACAGACACAAAGTCCTCGGAGTACACTATATTTTTGGGGCA ATCTTCTGACGGGGAGCCCCGAGCCCGACAGCCACAGCCATGGCTGCAGCAGTCAAGCTC ACTTCCTCTTCTGTGGCTTCTTCCCCCACCATGCAGCCCCTGTATCTGCGAACAGGTTTC CATGGTTCCTCTTTACCGTCCTCCTCCTTCTCGGCTACACCTGCTTCAACAGGTAGCAGC TACAAGCTGGTCGTGTGCATGGCTTCCTCCACAGATCAGCCGATAATCATAGGGCTTGCT GCAGACTCTGGATGTGGAAAGAGTACATTCATGCGGCGGTTGACGAGCGTCTTCGGGGGT GCTGCGTCCCCTCCCAAGGGGGGTAACCCAGACTCCAACACTCTGATCAGTGACACCACT ACTGTGATATGCTTGGATGATTACCATTCTCTGGACCGCACCGGTCGAAAGCAGAAGGGT GTTACAGCGCTTGACCCTCGGGCGAACAACTTTGATCTCATGTATGAACAGGTGAAGGCG ATTAAAGAAGGGAAGTCCATTGAGAAGCCCATCTACAACCATGTGACAGGCCTTTTGGAT CCTCCGGAAACTATCCAGCCCCCCAAAATTTTTGTCATTGAGGGCCTGCATCCCAATGTT TGATGCACGAGTTCGCGAGCTTTTTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26302 |
Definition |
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum |
Align length |
132 |
Score (bit) |
248.0 |
E-value |
2.0e-65 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959662|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_E23, 5' (686 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triti... 248 2e-65 sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesem... 242 2e-63 sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spina... 232 1e-60 sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabi... 231 2e-60 sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlam... 211 3e-54 sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (s... 169 2e-41 sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragmen... 115 3e-25 sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorha... 59 3e-08 sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum GN=udk P... 55 3e-07 sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar ... 55 3e-07 sp|Q9Z7H0|URK_CHLPN Uridine kinase OS=Chlamydia pneumoniae GN=ud... 52 4e-06 sp|A1S796|URK_SHEAM Uridine kinase OS=Shewanella amazonensis (st... 45 4e-04 sp|A5VKU8|URK_LACRD Uridine kinase OS=Lactobacillus reuteri (str... 44 8e-04 sp|P67408|URK_SALTY Uridine kinase OS=Salmonella typhimurium GN=... 44 0.001 sp|P67409|URK_SALTI Uridine kinase OS=Salmonella typhi GN=udk PE... 44 0.001 sp|A9N7M0|URK_SALPB Uridine kinase OS=Salmonella paratyphi B (st... 44 0.001 sp|Q5PDX6|URK_SALPA Uridine kinase OS=Salmonella paratyphi A GN=... 44 0.001 sp|Q57MN1|URK_SALCH Uridine kinase OS=Salmonella choleraesuis GN... 44 0.001 sp|P0A8F7|URK_SHIFL Uridine kinase OS=Shigella flexneri GN=udk P... 43 0.002 sp|P0A8F4|URK_ECOLI Uridine kinase OS=Escherichia coli (strain K... 43 0.002 sp|P0A8F5|URK_ECOL6 Uridine kinase OS=Escherichia coli O6 GN=udk... 43 0.002 sp|P0A8F6|URK_ECO57 Uridine kinase OS=Escherichia coli O157:H7 G... 43 0.002 sp|P52623|UCK1_MOUSE Uridine-cytidine kinase 1 OS=Mus musculus G... 43 0.002 sp|Q9HA47|UCK1_HUMAN Uridine-cytidine kinase 1 OS=Homo sapiens G... 43 0.002 sp|Q9HQC9|URK_HALSA Uridine kinase OS=Halobacterium salinarium G... 42 0.002 sp|Q8DD30|COAA_VIBVU Pantothenate kinase OS=Vibrio vulnificus GN... 42 0.002 sp|Q92BL6|URK_LISIN Uridine kinase OS=Listeria innocua GN=udk PE... 42 0.003 sp|A7MHG8|URK_ENTS8 Uridine kinase OS=Enterobacter sakazakii (st... 42 0.003 sp|Q730F4|URK_BACC1 Uridine kinase OS=Bacillus cereus (strain AT... 42 0.003 sp|A3CMP3|COAA_STRSV Pantothenate kinase OS=Streptococcus sangui... 42 0.003
>sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 Length = 404
Score = 248 bits (634), Expect = 2e-65 Identities = 118/132 (89%), Positives = 127/132 (96%) Frame = +1
Query: 259 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 438 ++ + +QPI+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLD Sbjct: 51 VSCAVEQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLD 110
Query: 439 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 618 DYHSLDRTGRK+KGVTALDP+AN+FDLMYEQVKAIKEGK+IEKPIYNHVTGLLDP E IQ Sbjct: 111 DYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVTGLLDPAELIQ 170
Query: 619 PPKIFVIEGLHP 654 PPKIFVIEGLHP Sbjct: 171 PPKIFVIEGLHP 182
>sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1 Length = 397
Score = 242 bits (617), Expect = 2e-63 Identities = 115/136 (84%), Positives = 127/136 (93%) Frame = +1
Query: 247 LVVCMASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTV 426 ++ C+A + Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PP+GGNPDSNTLISDTTTV Sbjct: 41 VITCLAGDS-QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTV 99
Query: 427 ICLDDYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPP 606 ICLDDYHSLDRTGRK+KGVTALDPRAN+FDLMYEQVKA+KEGK++EKPIYNHVTGLLD P Sbjct: 100 ICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAP 159
Query: 607 ETIQPPKIFVIEGLHP 654 E I+PPKI VIEGLHP Sbjct: 160 ELIKPPKILVIEGLHP 175
Score = 32.3 bits (72), Expect = 2.4 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +2
Query: 536 RRLKKGSPLRSPSTTM*QAFWILRKLSSPPKFLSLRACIPMFDARVREL 682 + LK+G + P +L PPK L + PMFD+RVR+L Sbjct: 136 KALKEGKAVEKPIYNHVTGLLDAPELIKPPKILVIEGLHPMFDSRVRDL 184
>sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 402
Score = 232 bits (592), Expect = 1e-60 Identities = 110/129 (85%), Positives = 120/129 (93%) Frame = +1
Query: 268 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 447 S Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLDD+H Sbjct: 52 SQQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFH 111
Query: 448 SLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQPPK 627 SLDR GRK + VTALDP+AN+FDLMYEQVKA+KEGK+++KPIYNHV+GLLDPPE IQPPK Sbjct: 112 SLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPK 171
Query: 628 IFVIEGLHP 654 I VIEGLHP Sbjct: 172 ILVIEGLHP 180
Score = 32.3 bits (72), Expect = 2.4 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +2
Query: 536 RRLKKGSPLRSPSTTM*QAFWILRKLSSPPKFLSLRACIPMFDARVREL 682 + LK+G + P +L PPK L + PM+DARVREL Sbjct: 141 KALKEGKAVDKPIYNHVSGLLDPPELIQPPKILVIEGLHPMYDARVREL 189
>sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1 Length = 395
Score = 231 bits (590), Expect = 2e-60 Identities = 110/132 (83%), Positives = 120/132 (90%) Frame = +1
Query: 259 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 438 + + + I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLD Sbjct: 43 LITCAQETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLD 102
Query: 439 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 618 DYHSLDR GRK++ VTALDPRAN+FDLMYEQVKA+K G ++EKPIYNHVTGLLDPPE IQ Sbjct: 103 DYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQ 162
Query: 619 PPKIFVIEGLHP 654 PPKI VIEGLHP Sbjct: 163 PPKILVIEGLHP 174
>sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1 Length = 375
Score = 211 bits (537), Expect = 3e-54 Identities = 98/127 (77%), Positives = 109/127 (85%) Frame = +1
Query: 274 DQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSL 453 D+ ++IGLAADSGCGKSTFMRR+TS+FGG PP GGNPDSNTLISD TTVICLDDYH L Sbjct: 34 DKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHCL 93
Query: 454 DRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQPPKIF 633 DR GRK KGVTAL P A NFDLMY QVKA+KEGKS++KPIYNHV+GL+D PE I+ P I Sbjct: 94 DRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNHVSGLIDAPEKIESPPIL 153
Query: 634 VIEGLHP 654 VIEGLHP Sbjct: 154 VIEGLHP 160
>sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1 Length = 332
Score = 169 bits (427), Expect = 2e-41 Identities = 82/132 (62%), Positives = 96/132 (72%) Frame = +1
Query: 259 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 438 M + D+ ++IG+A DSGCGKSTF+RRLT +FG + TVICLD Sbjct: 1 MTTQLDRVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLD 43
Query: 439 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 618 DYHSLDR GRK GVTALDPRANNFDLMYEQ+K +K G+SI KPIYNH TGLLDPPE ++ Sbjct: 44 DYHSLDRQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHETGLLDPPEKVE 103
Query: 619 PPKIFVIEGLHP 654 P K+ VIEGLHP Sbjct: 104 PNKVVVIEGLHP 115
>sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1 Length = 89
Score = 115 bits (287), Expect = 3e-25 Identities = 57/66 (86%), Positives = 59/66 (89%) Frame = +1
Query: 340 LTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKQKGVTALDPRANNFDL 519 LTSVFGGAA PP+GGNPDSNTLISDTTTVICLDDYHSLDR GVTALDPRAN+FDL Sbjct: 1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDR------GVTALDPRANDFDL 54
Query: 520 MYEQVK 537 MYEQVK Sbjct: 55 MYEQVK 60
>sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorhabditis elegans GN=B0001.4 PE=2 SV=2 Length = 248
Score = 58.5 bits (140), Expect = 3e-08 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%) Frame = +1
Query: 259 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 438 M ++ P++IG+A + CGKST + R+ N ++N S I Sbjct: 1 MKNTLKLPLLIGVAGGTSCGKSTIVERIIE------------NLNANAKQSGRQIDIVHL 48
Query: 439 DYHSLDRTGRKQKGVTALDPRAN-------NFDLMYEQVKAIKEGKSIEKPIYNHVTGLL 597 HS R ++ + A + + N NFDL+ E ++ + +GK++E P Y+ +T + Sbjct: 49 SLHSFYRELSAEEKILAREGKFNFDHPDQINFDLLAETLQNMIDGKTVEIPKYDMITSSM 108
Query: 598 DPPETIQPPKIFVIEGL 648 + T++P K+ +IEG+ Sbjct: 109 NGTVTVEPAKVIIIEGI 125
>sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum GN=udk PE=3 SV=1 Length = 207
Score = 55.5 bits (132), Expect = 3e-07 Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%) Frame = +1
Query: 268 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 447 +T PI+I +A SG GK+TF + A PK + T+ VIC D Y+ Sbjct: 2 NTKSPILILIAGASGSGKTTFANEI------IARIPK----------NTTSVVICQDSYY 45
Query: 448 -SLDRTGRKQKGVTALD-PRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGL-LDPPETIQ 618 S + +K++ + D P + ++LM EQ+ IK+ K I+ PIY++ T + LD I Sbjct: 46 ISNSQLNKKERRLINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLDKTIDIS 105
Query: 619 PPKIFVIEGLH 651 + V+EG++ Sbjct: 106 DVDVIVLEGIY 116
>sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=udk PE=3 SV=1 Length = 207
Score = 55.5 bits (132), Expect = 3e-07 Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%) Frame = +1
Query: 268 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 447 +T PI+I +A SG GK+TF + A PK + T+ VIC D Y+ Sbjct: 2 NTKSPILILIAGASGSGKTTFANEI------IARIPK----------NTTSVVICQDSYY 45
Query: 448 -SLDRTGRKQKGVTALD-PRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGL-LDPPETIQ 618 S + +K++ + D P + ++LM EQ+ IK+ K I+ PIY++ T + LD I Sbjct: 46 ISNSQLNKKERRLINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLDKTIDIS 105
Query: 619 PPKIFVIEGLH 651 + V+EG++ Sbjct: 106 DVDVIVLEGIY 116
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8GRU9 |
Definition |
tr|Q8GRU9|Q8GRU9_ORYSI Phosphoribulokinase OS=Oryza sativa subsp. indica |
Align length |
132 |
Score (bit) |
253.0 |
E-value |
6.0e-66 |
Report |
 |