DK959685
Clone id TST39A01NGRL0005_F23
Library
Length 618
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_F23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CGGAGAGTGAAAGAATTGGCAAAGGAGGTTGTTGCCGGTCTGGAGTGCGGTGTTGGTCTG
GATGATTACAATGAGTGGCAGGAGGGTGATATTATTGAAGCTTTTAATCTGGTTGCAAAG
AAAAGGACTTTAGAAGAGGCCTCGGTTACCACGGCATCTTCACTTGCTGCAGTTGCGGCA
ACTGCCTCAGCCATCGTTACTAAACCTGTTTCTACTTCTTCCTCTGTCAGCAGTCCTACG
GCCTCTTGATTTGGAGGTCGACGTCAGGGTCAACACATGGTCTGTCGAAGAGAGTCTACG
TTTGTAACTGAAGTTACAAAGCTTGAAATTCTGAATCTATCGTCTTGGCCGGTCTGATCT
GCTAACAAGGTGGTCAGCCAGGCTCTTATTTCCATGACCATCATGAGCTCCAGGTGTTCA
GCAAATTTTGGGCCATAACTCAGCATGATCAGCTTACAGAGGTCCGCTGCGTTTTCCAGA
GAGATCAGTAGTTCATGCCAACAAGCCAAAGTATCCAAGCATTTGTAGCAAGCTGGATTA
TCACAAGGATGTTGTACTCCTATTTGAGGTTGGATGCTGCTGCTAGGTCAAGGCTGAAAA
CATCTCTACAGGGCGAGT
■■Homology search results ■■ -
sp_hit_id Q9SHI1
Definition sp|Q9SHI1|IF2C_ARATH Translation initiation factor IF-2, chloroplastic OS=Arabidopsis thaliana
Align length 46
Score (bit) 75.5
E-value 2.0e-13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959685|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_F23, 5'
(618 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9SHI1|IF2C_ARATH Translation initiation factor IF-2, chlorop... 75 2e-13
sp|Q5N0A5|IF2_SYNP6 Translation initiation factor IF-2 OS=Synech... 64 6e-10
sp|Q31LL9|IF2_SYNE7 Translation initiation factor IF-2 OS=Synech... 64 6e-10
sp|B0JU67|IF2_MICAN Translation initiation factor IF-2 OS=Microc... 63 1e-09
sp|A2BT70|IF2_PROMS Translation initiation factor IF-2 OS=Prochl... 61 4e-09
sp|Q2JMD7|IF2_SYNJB Translation initiation factor IF-2 OS=Synech... 60 7e-09
sp|Q3MBZ7|IF2_ANAVT Translation initiation factor IF-2 OS=Anabae... 60 9e-09
sp|Q8YQJ1|IF2_ANASP Translation initiation factor IF-2 OS=Anabae... 60 9e-09
sp|Q10XM3|IF2_TRIEI Translation initiation factor IF-2 OS=Tricho... 60 1e-08
sp|Q8DK04|IF2_THEEB Translation initiation factor IF-2 OS=Thermo... 60 1e-08
sp|P72689|IF2_SYNY3 Translation initiation factor IF-2 OS=Synech... 59 2e-08
sp|Q318P8|IF2_PROM9 Translation initiation factor IF-2 OS=Prochl... 59 2e-08
sp|A2BYM0|IF2_PROM5 Translation initiation factor IF-2 OS=Prochl... 59 2e-08
sp|A3PEY3|IF2_PROM0 Translation initiation factor IF-2 OS=Prochl... 59 2e-08
sp|A8G6Z5|IF2_PROM2 Translation initiation factor IF-2 OS=Prochl... 59 3e-08
sp|Q7NH85|IF2_GLOVI Translation initiation factor IF-2 OS=Gloeob... 59 3e-08
sp|P57997|IF2C_PHAVU Translation initiation factor IF-2, chlorop... 59 3e-08
sp|Q2JSB7|IF2_SYNJA Translation initiation factor IF-2 OS=Synech... 58 3e-08
sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2 OS=Prochl... 57 6e-08
sp|Q8R5Z1|IF2_FUSNN Translation initiation factor IF-2 OS=Fusoba... 57 6e-08
sp|Q7V5M4|IF2_PROMM Translation initiation factor IF-2 OS=Prochl... 55 4e-07
sp|A2C6Q5|IF2_PROM3 Translation initiation factor IF-2 OS=Prochl... 55 4e-07
sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2 OS=Synech... 54 8e-07
sp|Q3AZB7|IF2_SYNS9 Translation initiation factor IF-2 OS=Synech... 54 8e-07
sp|A5GNJ0|IF2_SYNPW Translation initiation factor IF-2 OS=Synech... 54 8e-07
sp|A5GVG4|IF2_SYNR3 Translation initiation factor IF-2 OS=Synech... 53 1e-06
sp|Q7MXE4|IF2_PORGI Translation initiation factor IF-2 OS=Porphy... 53 1e-06
sp|A5D2S0|IF2_PELTS Translation initiation factor IF-2 OS=Peloto... 53 1e-06
sp|Q3B1Z8|IF2_PELLD Translation initiation factor IF-2 OS=Pelodi... 53 1e-06
sp|Q8F7K1|IF2_LEPIN Translation initiation factor IF-2 OS=Leptos... 53 1e-06

>sp|Q9SHI1|IF2C_ARATH Translation initiation factor IF-2,
chloroplastic OS=Arabidopsis thaliana GN=At1g17220 PE=2
SV=1
Length = 1016

Score = 75.5 bits (184), Expect = 2e-13
Identities = 34/46 (73%), Positives = 40/46 (86%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLEE 138
+RVKE KEV AGLECG+G+DDY++W EGDIIEAFN V K+RTLEE
Sbjct: 957 KRVKENVKEVSAGLECGIGMDDYDDWIEGDIIEAFNAVQKRRTLEE 1002


>sp|Q5N0A5|IF2_SYNP6 Translation initiation factor IF-2
OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG
1402/1) GN=infB PE=3 SV=1
Length = 1030

Score = 63.9 bits (154), Expect = 6e-10
Identities = 27/45 (60%), Positives = 36/45 (80%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLE 135
+R+KE KEV +G ECG+GLD ++ WQEGDIIE + +V K+RTLE
Sbjct: 985 KRMKEDVKEVNSGYECGIGLDSFSAWQEGDIIETYRMVTKRRTLE 1029


>sp|Q31LL9|IF2_SYNE7 Translation initiation factor IF-2
OS=Synechococcus elongatus (strain PCC 7942) GN=infB PE=3
SV=1
Length = 1030

Score = 63.9 bits (154), Expect = 6e-10
Identities = 27/45 (60%), Positives = 36/45 (80%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLE 135
+R+KE KEV +G ECG+GLD ++ WQEGDIIE + +V K+RTLE
Sbjct: 985 KRMKEDVKEVNSGYECGIGLDSFSAWQEGDIIETYRMVTKRRTLE 1029


>sp|B0JU67|IF2_MICAN Translation initiation factor IF-2 OS=Microcystis
aeruginosa (strain NIES-843) GN=infB PE=3 SV=1
Length = 1010

Score = 62.8 bits (151), Expect = 1e-09
Identities = 26/44 (59%), Positives = 36/44 (81%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTL 132
+R+KE A+EV G ECGVG+ +N+W+EGDIIEA+ +V K+RTL
Sbjct: 965 KRMKEDAREVATGFECGVGVSKFNDWKEGDIIEAYEMVMKRRTL 1008


>sp|A2BT70|IF2_PROMS Translation initiation factor IF-2
OS=Prochlorococcus marinus (strain AS9601) GN=infB PE=3
SV=1
Length = 1126

Score = 61.2 bits (147), Expect = 4e-09
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLEE 138
+RVK+ KEV G ECGVG D ++ W EGD+IEAF V KKRTL +
Sbjct: 1081 KRVKDDVKEVNTGFECGVGCDKFSSWVEGDVIEAFKFVTKKRTLSQ 1126


>sp|Q2JMD7|IF2_SYNJB Translation initiation factor IF-2
OS=Synechococcus sp. GN=infB PE=3 SV=1
Length = 1054

Score = 60.5 bits (145), Expect = 7e-09
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTL 132
+R K+ +EV AG ECG+G+D + WQEGDIIE + +V K+RTL
Sbjct: 1008 KRFKDDVREVAAGFECGIGIDKFQSWQEGDIIEVYQMVTKRRTL 1051


>sp|Q3MBZ7|IF2_ANAVT Translation initiation factor IF-2 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=infB PE=3
SV=1
Length = 1038

Score = 60.1 bits (144), Expect = 9e-09
Identities = 24/44 (54%), Positives = 37/44 (84%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTL 132
+R+K+ A+EV AG ECG+G+D +++W EGDIIE++ +V K+RTL
Sbjct: 991 KRMKDDAREVNAGYECGIGVDKFHDWAEGDIIESYQMVTKRRTL 1034


>sp|Q8YQJ1|IF2_ANASP Translation initiation factor IF-2 OS=Anabaena
sp. (strain PCC 7120) GN=infB PE=3 SV=1
Length = 1039

Score = 60.1 bits (144), Expect = 9e-09
Identities = 24/44 (54%), Positives = 37/44 (84%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTL 132
+R+K+ A+EV AG ECG+G+D +++W EGDIIE++ +V K+RTL
Sbjct: 992 KRMKDDAREVNAGYECGIGVDKFHDWAEGDIIESYQMVTKRRTL 1035


>sp|Q10XM3|IF2_TRIEI Translation initiation factor IF-2
OS=Trichodesmium erythraeum (strain IMS101) GN=infB PE=3
SV=1
Length = 1059

Score = 59.7 bits (143), Expect = 1e-08
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTL 132
RR+K+ KEV AG ECGV D++N W EGDIIEA+ +V K+R L
Sbjct: 1014 RRMKDDVKEVNAGYECGVSFDNFNNWSEGDIIEAYQMVTKRRKL 1057


>sp|Q8DK04|IF2_THEEB Translation initiation factor IF-2
OS=Thermosynechococcus elongatus (strain BP-1) GN=infB
PE=3 SV=1
Length = 957

Score = 59.7 bits (143), Expect = 1e-08
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTL 132
+R+K+ +EV AG ECGV LDD+ +WQEGDII AF V K+R+L
Sbjct: 907 KRLKDDVREVAAGYECGVRLDDFQQWQEGDIIYAFQTVTKRRSL 950


tr_hit_id Q0DFR3
Definition tr|Q0DFR3|Q0DFR3_ORYSJ Translation initiation factor IF-2 (Fragment) OS=Oryza sativa subsp. japonica
Align length 46
Score (bit) 76.3
E-value 1.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959685|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_F23, 5'
(618 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0DFR3|Q0DFR3_ORYSJ Translation initiation factor IF-2 (Fragm... 76 1e-12
tr|B8AX87|B8AX87_ORYSI Putative uncharacterized protein OS=Oryza... 76 1e-12
tr|A3C2P3|A3C2P3_ORYSJ Translation initiation factor IF-2 OS=Ory... 76 1e-12
tr|Q9ASQ3|Q9ASQ3_ARATH Translation initiation factor IF-2 OS=Ara... 75 2e-12
tr|A9S9Z9|A9S9Z9_PHYPA Translation initiation factor IF-2 OS=Phy... 74 5e-12
tr|A7PWW6|A7PWW6_VITVI Translation initiation factor IF-2 OS=Vit... 74 7e-12
tr|A5B2X2|A5B2X2_VITVI Translation initiation factor IF-2 OS=Vit... 74 7e-12
tr|B7K5H8|B7K5H8_SYNP8 Translation initiation factor IF-2 OS=Syn... 66 1e-09
tr|B4BYU7|B4BYU7_9CHRO Translation initiation factor IF-2 OS=Cya... 66 1e-09
tr|B1WZN7|B1WZN7_CYAA5 Translation initiation factor IF-2 OS=Cya... 64 5e-09
tr|A3IMP6|A3IMP6_9CHRO Translation initiation factor IF-2 OS=Cya... 64 5e-09
tr|B2J955|B2J955_NOSP7 Translation initiation factor IF-2 OS=Nos... 64 9e-09
tr|A0YK85|A0YK85_9CYAN Translation initiation factor IF-2 OS=Lyn... 64 9e-09
tr|A8YF54|A8YF54_MICAE Translation initiation factor IF-2 OS=Mic... 63 2e-08
tr|B7KIU2|B7KIU2_9CHRO Translation initiation factor IF-2 OS=Cya... 61 5e-08
tr|A8ITP1|A8ITP1_CHLRE Organellar translation initiation factor ... 60 8e-08
tr|B4B5B0|B4B5B0_9CHRO Translation initiation factor IF-2 OS=Cya... 60 1e-07
tr|B8HUA9|B8HUA9_9CHRO Translation initiation factor IF-2 OS=Cya... 59 2e-07
tr|B4WLL9|B4WLL9_9SYNE Translation initiation factor IF-2, putat... 59 2e-07
tr|A0ZFU3|A0ZFU3_NODSP Translation initiation factor IF-2 OS=Nod... 59 2e-07
tr|B1XI09|B1XI09_SYNP2 Translation initiation factor IF-2 OS=Syn... 59 3e-07
tr|Q7P2X4|Q7P2X4_FUSNV Translation initiation factor IF-2 OS=Fus... 59 3e-07
tr|Q4C0K8|Q4C0K8_CROWT Translation initiation factor IF-2 OS=Cro... 59 3e-07
tr|B4VQB8|B4VQB8_9CYAN Translation initiation factor IF-2, putat... 59 3e-07
tr|B5W8E8|B5W8E8_SPIMA Translation initiation factor IF-2 OS=Art... 58 5e-07
tr|A5TS43|A5TS43_FUSNP Translation initiation factor IF-2 OS=Fus... 57 7e-07
tr|B5ILW8|B5ILW8_9CHRO Translation initiation factor IF-2, putat... 57 9e-07
tr|A9BCI5|A9BCI5_PROM4 Translation initiation factor IF-2 OS=Pro... 57 1e-06
tr|B7DKQ4|B7DKQ4_DESSA Translation initiation factor IF-2 OS=Des... 57 1e-06
tr|B0BZP8|B0BZP8_ACAM1 Translation initiation factor IF-2 OS=Aca... 55 3e-06

>tr|Q0DFR3|Q0DFR3_ORYSJ Translation initiation factor IF-2
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os05g0575300 PE=3 SV=1
Length = 559

Score = 76.3 bits (186), Expect = 1e-12
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLEE 138
RRVKE KEV AGLECG+G+DD++EW+EGD++EAFN V K RTLEE
Sbjct: 498 RRVKETVKEVGAGLECGIGVDDFDEWEEGDVVEAFNTVKKTRTLEE 543


>tr|B8AX87|B8AX87_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_21094 PE=4 SV=1
Length = 880

Score = 76.3 bits (186), Expect = 1e-12
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLEE 138
RRVKE KEV AGLECG+G+DD++EW+EGD++EAFN V K RTLEE
Sbjct: 819 RRVKETVKEVGAGLECGIGVDDFDEWEEGDVVEAFNTVKKTRTLEE 864


>tr|A3C2P3|A3C2P3_ORYSJ Translation initiation factor IF-2 OS=Oryza
sativa subsp. japonica GN=OsJ_029565 PE=3 SV=1
Length = 983

Score = 76.3 bits (186), Expect = 1e-12
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLEE 138
RRVKE KEV AGLECG+G+DD++EW+EGD++EAFN V K RTLEE
Sbjct: 922 RRVKETVKEVGAGLECGIGVDDFDEWEEGDVVEAFNTVKKTRTLEE 967


>tr|Q9ASQ3|Q9ASQ3_ARATH Translation initiation factor IF-2
OS=Arabidopsis thaliana PE=2 SV=1
Length = 1026

Score = 75.5 bits (184), Expect = 2e-12
Identities = 34/46 (73%), Positives = 40/46 (86%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLEE 138
+RVKE KEV AGLECG+G+DDY++W EGDIIEAFN V K+RTLEE
Sbjct: 967 KRVKENVKEVSAGLECGIGMDDYDDWIEGDIIEAFNAVQKRRTLEE 1012


>tr|A9S9Z9|A9S9Z9_PHYPA Translation initiation factor IF-2
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_182684 PE=3 SV=1
Length = 652

Score = 74.3 bits (181), Expect = 5e-12
Identities = 37/46 (80%), Positives = 39/46 (84%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLEE 138
RRVKELAKEV AGLECGVG D+NEWQ GD I AF LVAKKRTLE+
Sbjct: 590 RRVKELAKEVPAGLECGVGALDFNEWQVGDKIMAFKLVAKKRTLED 635


>tr|A7PWW6|A7PWW6_VITVI Translation initiation factor IF-2 OS=Vitis
vinifera GN=GSVIVT00025807001 PE=3 SV=1
Length = 607

Score = 73.9 bits (180), Expect = 7e-12
Identities = 32/46 (69%), Positives = 40/46 (86%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLEE 138
RRVKE+ KEV AGLECG+G++DYN+W+ GDI++AFN KKRTLEE
Sbjct: 546 RRVKEIVKEVNAGLECGMGMEDYNDWEVGDIVQAFNKKQKKRTLEE 591


>tr|A5B2X2|A5B2X2_VITVI Translation initiation factor IF-2 OS=Vitis
vinifera GN=VITISV_024584 PE=3 SV=1
Length = 1005

Score = 73.9 bits (180), Expect = 7e-12
Identities = 32/46 (69%), Positives = 40/46 (86%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTLEE 138
RRVKE+ KEV AGLECG+G++DYN+W+ GDI++AFN KKRTLEE
Sbjct: 944 RRVKEMVKEVNAGLECGMGMEDYNDWEVGDIVQAFNKKQKKRTLEE 989


>tr|B7K5H8|B7K5H8_SYNP8 Translation initiation factor IF-2
OS=Synechococcus sp. (strain PCC 8801 / RF-1)
GN=PCC8801_2710 PE=4 SV=1
Length = 992

Score = 66.2 bits (160), Expect = 1e-09
Identities = 28/44 (63%), Positives = 37/44 (84%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTL 132
+R+KE A+EV AG ECG+G D +N+WQEGDIIEA+ +V K+RTL
Sbjct: 946 KRIKEDAREVNAGYECGIGTDKFNDWQEGDIIEAYEMVMKRRTL 989


>tr|B4BYU7|B4BYU7_9CHRO Translation initiation factor IF-2
OS=Cyanothece sp. PCC 8802 GN=Cyan8802DRAFT_1857 PE=4
SV=1
Length = 992

Score = 66.2 bits (160), Expect = 1e-09
Identities = 28/44 (63%), Positives = 37/44 (84%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTL 132
+R+KE A+EV AG ECG+G D +N+WQEGDIIEA+ +V K+RTL
Sbjct: 946 KRIKEDAREVNAGYECGIGTDKFNDWQEGDIIEAYEMVMKRRTL 989


>tr|B1WZN7|B1WZN7_CYAA5 Translation initiation factor IF-2
OS=Cyanothece (strain ATCC 51142) GN=infB PE=4 SV=1
Length = 1000

Score = 64.3 bits (155), Expect = 5e-09
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = +1

Query: 1 RRVKELAKEVVAGLECGVGLDDYNEWQEGDIIEAFNLVAKKRTL 132
+RVKE +EV +G ECG+G+D +N+W+EGDIIEA+ LV K+RTL
Sbjct: 952 KRVKEDVREVNSGYECGIGVDKFNDWEEGDIIEAYELVMKRRTL 995