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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959774
Clone id TST39A01NGRL0005_J18
Library
Length 378
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_J18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGGAGCAATGGCCCAATCGCATGAGGAACACAACCACGGCCCTGCCGAAGCGCCACACAT
GGGTCATGACTCTGCGGCGTCCACACCGATTTGCTTCTTCTCACAGCTAGCTGCCATAGC
CTTCCCTGTCTGGCTCTTGGCCTTCGTGTTCTAGACAGGTGGACCATTATTATCTTTGCA
AATAACATGCTCCAAAACGAGATGCACATGGTTCTTCATTTTGAATAATAGTTAGCCATG
ATTACTAATCATGCCTTAAAGTGAAGTATAAAGACACACATACTTTACTGCATTTTTCGA
TAGCTTATGGGGTACTTTACTCATAATTACAATCTGCTTTCTTTATTTCTTTTTAAAAAA
AAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9Y613
Definition sp|Q9Y613|FHOD1_HUMAN FH1/FH2 domain-containing protein 1 OS=Homo sapiens
Align length 46
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959774|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_J18, 5'
         (354 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y613|FHOD1_HUMAN FH1/FH2 domain-containing protein 1 OS=Hom...    30   4.8  

>sp|Q9Y613|FHOD1_HUMAN FH1/FH2 domain-containing protein 1 OS=Homo
           sapiens GN=FHOD1 PE=1 SV=3
          Length = 1164

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -2

Query: 140 PRARQGRLWQLAVRRSKSVWTPQSHDPCVALRQGRGCVPHAIGPLL 3
           P ARQ  LW  +   + +  TPQS  PCV LR  R   P    PL+
Sbjct: 478 PDARQ--LWD-SPETAPAARTPQSPAPCVLLRAQRSLAPEPKEPLI 520
tr_hit_id Q6K6P6
Definition tr|Q6K6P6|Q6K6P6_ORYSJ Putative uncharacterized protein P0042D01.11 OS=Oryza sativa subsp. japonica
Align length 49
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959774|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_J18, 5'
         (354 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6K6P6|Q6K6P6_ORYSJ Putative uncharacterized protein P0042D01...    34   4.1  

>tr|Q6K6P6|Q6K6P6_ORYSJ Putative uncharacterized protein P0042D01.11
           OS=Oryza sativa subsp. japonica GN=P0042D01.11 PE=4 SV=1
          Length = 213

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -2

Query: 179 AKIIMVHLSRTRRPRARQGRLWQLAVRRSKSVWTPQSHDPCVALRQGRG 33
           A+     LSRTR    R  R  +L  RR  + W P    PC+ +R  RG
Sbjct: 104 AEAATTRLSRTRAASRRPRRCGRLRARRVAAAWGPAVSRPCLRVRLTRG 152