DK959794 |
Clone id |
TST39A01NGRL0005_K14 |
Library |
TST39 |
Length |
687 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_K14. 5' end sequence. |
Accession |
DK959794 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL593Contig1 |
Sequence |
CCTTCGTCTGCTAAGTCAGGAGCTTCTTCGGCTTTGGGTGCTCTTCCTCTCTCTCGCGCT ACCTTCTGTGCATGAGCGCGAGAGAGACTTCTGTGTAGTCCATGATGAGGAAGGCAGGTA GCCATCTCAGCAAGCTCGCCATTCGTAGCATTGCTTCCCAGCAGGTTACCCTCAACCCTT CTGTGTTTTCCAGCGCCTCCCGCCGAGGCTACGCTGACGACGCGTCGCTGAAGAAGACGC CCCTCTTTGATTATCATGTCGAAAATGGGGGTAAGATGGTACCTTTTGCCGGCTGGAGCA TGCCTCTCCAATACAAGGACTCCATCATGGACTCTACAACAAACTGCAGAGAGAATGGCA GCCTTTTTGATGTGTCGCATATGTGCGGTCTAAGCCTCAAAGGAAAGGATAGCATTGCTT TTCTTGAGAAGCTTGTTGTTGGCGATATCACTGCTCTAGCTCCAGGCACAGGCACTCTCT CTGTCTTCACAAATGAAAAGGGGGGCATTATCGACGACACTGTCATAACAAAAGTGAAGG ATGATCACATTTACCTTGTGGTGAATGCTGGTTGTAGAGACAAAGATCTTGAACACATGG AGTCGCATCTGAAGCCCTTTCAAGCTTCCGGCAAGGATGTGCAATGGCATATCCATGACG AACGGGCTCTTCTGGCCTTGCAGGGAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P93256 |
Definition |
sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum |
Align length |
163 |
Score (bit) |
279.0 |
E-value |
9.0e-75 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959794|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_K14, 5' (687 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Me... 279 9e-75 sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Fl... 278 1e-74 sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Fl... 275 1e-73 sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=So... 275 2e-73 sp|P49363|GCST_FLAPR Aminomethyltransferase, mitochondrial OS=Fl... 273 8e-73 sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial OS=Pisu... 271 2e-72 sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Ar... 270 4e-72 sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mu... 169 1e-41 sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Ho... 167 5e-41 sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bo... 166 8e-41 sp|Q9TSZ7|GCST_CANFA Aminomethyltransferase, mitochondrial OS=Ca... 163 9e-40 sp|Q54DD3|GCST_DICDI Aminomethyltransferase, mitochondrial OS=Di... 155 2e-37 sp|P28337|GCST_CHICK Aminomethyltransferase, mitochondrial OS=Ga... 152 2e-36 sp|P48015|GCST_YEAST Aminomethyltransferase, mitochondrial OS=Sa... 140 6e-33 sp|O14110|GCST_SCHPO Probable aminomethyltransferase, mitochondr... 132 2e-30 sp|Q9WY54|GCST_THEMA Aminomethyltransferase OS=Thermotoga mariti... 124 6e-28 sp|A5IKL0|GCST_THEP1 Aminomethyltransferase OS=Thermotoga petrop... 121 4e-27 sp|Q666R5|GCST_YERPS Aminomethyltransferase OS=Yersinia pseudotu... 114 6e-25 sp|A4TIA5|GCST_YERPP Aminomethyltransferase OS=Yersinia pestis (... 114 6e-25 sp|Q1CEZ7|GCST_YERPN Aminomethyltransferase OS=Yersinia pestis b... 114 6e-25 sp|Q8ZHI6|GCST_YERPE Aminomethyltransferase OS=Yersinia pestis G... 114 6e-25 sp|Q1CB44|GCST_YERPA Aminomethyltransferase OS=Yersinia pestis b... 114 6e-25 sp|A7FF19|GCST_YERP3 Aminomethyltransferase OS=Yersinia pseudotu... 114 6e-25 sp|Q65HF9|GCST_BACLD Aminomethyltransferase OS=Bacillus lichenif... 112 1e-24 sp|A1JPN6|GCST_YERE8 Aminomethyltransferase OS=Yersinia enteroco... 109 1e-23 sp|P54378|GCST_BACSU Aminomethyltransferase OS=Bacillus subtilis... 109 2e-23 sp|A8GIS1|GCST_SERP5 Aminomethyltransferase OS=Serratia proteama... 108 3e-23 sp|Q7W1C6|GCST_BORPA Aminomethyltransferase OS=Bordetella parape... 108 3e-23 sp|Q7WP31|GCST_BORBR Aminomethyltransferase OS=Bordetella bronch... 108 3e-23 sp|A6LP67|GCST_THEM4 Aminomethyltransferase OS=Thermosipho melan... 107 5e-23
>sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1 Length = 408
Score = 279 bits (714), Expect = 9e-75 Identities = 132/163 (80%), Positives = 144/163 (88%) Frame = +3
Query: 198 SRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVS 377 +RR +A +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDV+ Sbjct: 26 ARRCFASEADLKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVA 85
Query: 378 HMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYL 557 HMCGLSLKGKD I FLEKLVVGDI LAPGTGTLSV TNEKGG IDDTVITKV DDHIYL Sbjct: 86 HMCGLSLKGKDCIPFLEKLVVGDIAGLAPGTGTLSVLTNEKGGAIDDTVITKVTDDHIYL 145
Query: 558 VVNAGCRDKDLEHMESHLKPFQASGKDVQWHIHDERALLALQG 686 VVNAGCR+KDL H+E H+K F+A G DV WHIHDER+LLALQG Sbjct: 146 VVNAGCREKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQG 188
>sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1 Length = 407
Score = 278 bits (712), Expect = 1e-74 Identities = 130/162 (80%), Positives = 144/162 (88%) Frame = +3
Query: 201 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 380 RR YA +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIM+ST NCRENGSLFDVSH Sbjct: 26 RRWYASEADLKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSH 85
Query: 381 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 560 MCGLSLKGKD +AFLEKLVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV DDHIYLV Sbjct: 86 MCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLV 145
Query: 561 VNAGCRDKDLEHMESHLKPFQASGKDVQWHIHDERALLALQG 686 VNAGCRDKDL H+E H+K F+A G DV WHIHDER+LLALQG Sbjct: 146 VNAGCRDKDLAHIEQHMKAFKAKGGDVSWHIHDERSLLALQG 187
>sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1 Length = 407
Score = 275 bits (704), Expect = 1e-73 Identities = 129/162 (79%), Positives = 144/162 (88%) Frame = +3
Query: 201 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 380 RR YA +A LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDVSH Sbjct: 26 RRCYASEADLKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVSH 85
Query: 381 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 560 MCGLSLKGKD +AFLEKLVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV DDHIYLV Sbjct: 86 MCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLV 145
Query: 561 VNAGCRDKDLEHMESHLKPFQASGKDVQWHIHDERALLALQG 686 VNAGCRDKDL H+E H+K F+A G DV WHI+DER+LLALQG Sbjct: 146 VNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIYDERSLLALQG 187
>sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1 Length = 406
Score = 275 bits (703), Expect = 2e-73 Identities = 127/162 (78%), Positives = 144/162 (88%) Frame = +3
Query: 201 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 380 RR +A DA LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDVSH Sbjct: 26 RRCFASDADLKKTVLYDFHVVNGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVSH 85
Query: 381 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 560 MCGLSLKGKD+I FLEKLV+ D+ LAPGTG+L+VFTNEKGG IDD+V+TKV +DHIYLV Sbjct: 86 MCGLSLKGKDTIPFLEKLVIADVAGLAPGTGSLTVFTNEKGGAIDDSVVTKVTNDHIYLV 145
Query: 561 VNAGCRDKDLEHMESHLKPFQASGKDVQWHIHDERALLALQG 686 VNAGCRDKDL H+E H+K F++ G DV WHIHDER+LLALQG Sbjct: 146 VNAGCRDKDLAHIEEHMKSFKSKGGDVSWHIHDERSLLALQG 187
>sp|P49363|GCST_FLAPR Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1 Length = 407
Score = 273 bits (697), Expect = 8e-73 Identities = 129/172 (75%), Positives = 146/172 (84%) Frame = +3
Query: 171 LNPSVFSSASRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCR 350 L S + +RR YA +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIM+ST NCR Sbjct: 16 LGQSDKKTIARRCYASEADLKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCR 75
Query: 351 ENGSLFDVSHMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVIT 530 ENGSLFDVSHMCGLSLKGKD + FLEKLVV D+ L PGTG+L+VFTNEKGG IDD+VIT Sbjct: 76 ENGSLFDVSHMCGLSLKGKDCVPFLEKLVVADVAGLRPGTGSLTVFTNEKGGAIDDSVIT 135
Query: 531 KVKDDHIYLVVNAGCRDKDLEHMESHLKPFQASGKDVQWHIHDERALLALQG 686 KV DDHIYLVVNAGCRDKDL H+E H+K F+A G DV WHI+DER+LLALQG Sbjct: 136 KVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIYDERSLLALQG 187
>sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2 Length = 408
Score = 271 bits (693), Expect = 2e-72 Identities = 125/165 (75%), Positives = 146/165 (88%) Frame = +3
Query: 192 SASRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFD 371 + +RR +A ++ LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCR+NGSLFD Sbjct: 24 AVARRCFATESELKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFD 83
Query: 372 VSHMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHI 551 VSHMCGLSLKGKD ++FLEKLV+ D+ ALA GTGTL+VFTNEKGG IDD+VITKV DDH+ Sbjct: 84 VSHMCGLSLKGKDVVSFLEKLVIADVAALAHGTGTLTVFTNEKGGAIDDSVITKVTDDHL 143
Query: 552 YLVVNAGCRDKDLEHMESHLKPFQASGKDVQWHIHDERALLALQG 686 YLVVNAGCRDKDL H+E H+K F+A G DV WHIHDER+LLALQG Sbjct: 144 YLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQG 188
>sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1 Length = 408
Score = 270 bits (691), Expect = 4e-72 Identities = 125/163 (76%), Positives = 143/163 (87%) Frame = +3
Query: 198 SRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVS 377 SRR +A +A LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDV+ Sbjct: 26 SRRYFASEADLKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVA 85
Query: 378 HMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYL 557 HMCGLSLKGKD + FLE LVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV D+HIYL Sbjct: 86 HMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDEHIYL 145
Query: 558 VVNAGCRDKDLEHMESHLKPFQASGKDVQWHIHDERALLALQG 686 VVNAGCRDKDL H+E H+K F++ G DV WHIHDER+LLALQG Sbjct: 146 VVNAGCRDKDLAHIEEHMKAFKSKGGDVSWHIHDERSLLALQG 188
>sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1 Length = 403
Score = 169 bits (429), Expect = 1e-41 Identities = 83/153 (54%), Positives = 109/153 (71%) Frame = +3
Query: 228 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 407 L++TPL+D+H+ +GGKMV FAGWS+P+QY+DS +DS + R + SLFDVSHM + G Sbjct: 33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKIFGC 92
Query: 408 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 587 D + LE +VVGDI L P GTLS+FTNE GGI+DD +++ + H+Y+V NAGCRDKD Sbjct: 93 DRVKLLESVVVGDIAELRPNQGTLSLFTNEAGGILDDLIVSNTSEGHLYVVSNAGCRDKD 152
Query: 588 LEHMESHLKPFQASGKDVQWHIHDERALLALQG 686 L M+ +K FQ G DV + E ALLALQG Sbjct: 153 LALMQDKVKEFQNRGLDVGLEV-VENALLALQG 184
>sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1 Length = 403
Score = 167 bits (423), Expect = 5e-41 Identities = 80/153 (52%), Positives = 108/153 (70%) Frame = +3
Query: 228 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 407 L++TPL+D+H+ +GGKMV FAGWS+P+QY+DS DS + R++ SLFDVSHM + G Sbjct: 33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGS 92
Query: 408 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 587 D + +E LVVGDI L P GTLS+FTNE GGI+DD ++T + H+Y+V NAGC +KD Sbjct: 93 DRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKD 152
Query: 588 LEHMESHLKPFQASGKDVQWHIHDERALLALQG 686 L M+ ++ Q G+DV + D ALLALQG Sbjct: 153 LALMQDKVRELQNQGRDVGLEVLD-NALLALQG 184
>sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1 Length = 397
Score = 166 bits (421), Expect = 8e-41 Identities = 80/153 (52%), Positives = 108/153 (70%) Frame = +3
Query: 228 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 407 L +TPL+D+H+ +GGKMV FAGWS+P+QY+DS ++S + R++ SLFDVSHM + G Sbjct: 27 LHRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVNSHLHTRQHCSLFDVSHMLQTKIFGC 86
Query: 408 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 587 D + +E LVVGDI L P GTLS+FTNE GGI+DD ++T + H+Y+V NAGCR+KD Sbjct: 87 DRVKLMESLVVGDIAELKPNQGTLSLFTNEAGGILDDLIVTSASEGHLYVVSNAGCREKD 146
Query: 588 LEHMESHLKPFQASGKDVQWHIHDERALLALQG 686 L M+ ++ Q G DV + D ALLALQG Sbjct: 147 LTLMQDKVRELQNKGSDVALEVMD-NALLALQG 178
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SLK1 |
Definition |
tr|A9SLK1|A9SLK1_PHYPA Aminomethyltransferase OS=Physcomitrella patens subsp. patens |
Align length |
195 |
Score (bit) |
283.0 |
E-value |
7.0e-75 |
Report |
|