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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959818
Clone id TST39A01NGRL0005_L15
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_L15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGCTGCTGTGCTTCTTCTTCCTCTTTTCATAACCGGACATCTTCTTCATATCCATAACTC
CTGAGCTTTGCATCTTCTTTCCGTACAGCAAGGACGCCATGCTAATAAAATTACAATGAC
TTGAGTTGAACATGGACAAGCCGCGTAAAGTGTCGCACAGGAGCAGGTGTAGGAATCACA
TTTGCGACTCTACTTGGTGTGACGGCCATTGATGTGTGTGTTTTTTTTTCTCTGAGATTT
TTGAGACTGAAAAAGAGGAAGAGAAATTCTGATGTCCAAACGAGGCGGTCGTATTCGTTG
CCTGATTCGGGCACATGGAATGCAATGCGAGCATGGAGTTATCAGATTCGGTAGTGCATC
AGAATCATCATCACTTGCATCCGGACCTGCTTGATATATGGCCCTTTTCCTTTTGGAGTA
ATCGTTCACAAGACCATTCAAGCTTATCACCTGAAAGGAGGCTCACACTGTTTAGTTATA
AGCAGCTACAAAGAGCGACAAATAACTTCACAACGTTGATCGGTAAAGG
■■Homology search results ■■ -
sp_hit_id Q8BI66
Definition sp|Q8BI66|ZN526_MOUSE Zinc finger protein 526 OS=Mus musculus
Align length 27
Score (bit) 31.2
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959818|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_L15, 5'
         (529 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BI66|ZN526_MOUSE Zinc finger protein 526 OS=Mus musculus GN...    31   3.2  
sp|Q62520|ZIC2_MOUSE Zinc finger protein ZIC 2 OS=Mus musculus G...    31   4.1  
sp|O32164|CSD_BACSU Probable cysteine desulfurase OS=Bacillus su...    30   5.4  
sp|Q9WTS4|TEN1_MOUSE Teneurin-1 OS=Mus musculus GN=Odz1 PE=1 SV=1      30   7.2  
sp|Q9UKZ4|TEN1_HUMAN Teneurin-1 OS=Homo sapiens GN=ODZ1 PE=1 SV=2      30   7.2  

>sp|Q8BI66|ZN526_MOUSE Zinc finger protein 526 OS=Mus musculus
           GN=Znf526 PE=2 SV=1
          Length = 675

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 242 KNLREKKTHTSMAVTPSRVANVIPTPA 162
           K L  ++THT  + TP+RVA V P PA
Sbjct: 408 KFLYHRRTHTGKSGTPTRVATVSPAPA 434


>sp|Q62520|ZIC2_MOUSE Zinc finger protein ZIC 2 OS=Mus musculus
           GN=Zic2 PE=1 SV=2
          Length = 530

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 306 FGHMECNASMELSDSVVHQNHHHLHP 383
           +G M  N  M ++ +  H +HHH HP
Sbjct: 215 YGPMNMNMGMNMAAAAAHHHHHHHHP 240


>sp|O32164|CSD_BACSU Probable cysteine desulfurase OS=Bacillus
           subtilis GN=csd PE=3 SV=1
          Length = 406

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 248 SLKNLREKKTHTSMAVTPSRVANVIPTPAPVRHFTRLVH 132
           SL+++RE  T  +  V  S V+NV+ T  P++   ++ H
Sbjct: 151 SLEDVRETVTSNTKIVAVSHVSNVLGTVNPIKEMAKIAH 189


>sp|Q9WTS4|TEN1_MOUSE Teneurin-1 OS=Mus musculus GN=Odz1 PE=1 SV=1
          Length = 2731

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -2

Query: 177 DSYTCSCATLYAACPCSTQVIVILLAWRPCCTERRCKAQELWI*RRC 37
           D+  CSC   +    CST++  +       C+   C+ +E W+   C
Sbjct: 674 DTGVCSCDPKWTGSDCSTELCTMECGSHGVCSRGICQCEEGWVGPTC 720


>sp|Q9UKZ4|TEN1_HUMAN Teneurin-1 OS=Homo sapiens GN=ODZ1 PE=1 SV=2
          Length = 2725

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -2

Query: 177 DSYTCSCATLYAACPCSTQVIVILLAWRPCCTERRCKAQELWI*RRC 37
           D+  CSC   +    CST++  +       C+   C+ +E W+   C
Sbjct: 675 DAGVCSCDPKWTGSDCSTELCTMECGSHGVCSRGICQCEEGWVGPTC 721
tr_hit_id A7PAF9
Definition tr|A7PAF9|A7PAF9_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera
Align length 39
Score (bit) 38.9
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959818|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_L15, 5'
         (529 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PAF9|A7PAF9_VITVI Chromosome chr14 scaffold_9, whole genome...    39   0.16 
tr|B8LL62|B8LL62_PICSI Putative uncharacterized protein OS=Picea...    37   0.80 
tr|Q40543|Q40543_TOBAC Protein-serine/threonine kinase OS=Nicoti...    36   1.4  
tr|B8B0L9|B8B0L9_ORYSI Putative uncharacterized protein OS=Oryza...    34   5.2  
tr|Q5VMR6|Q5VMR6_ORYSJ Putative uncharacterized protein OSJNBa00...    33   6.7  
tr|Q0DCW3|Q0DCW3_ORYSJ Os06g0283300 protein OS=Oryza sativa subs...    33   6.7  
tr|A9RGI5|A9RGI5_PHYPA Predicted protein OS=Physcomitrella paten...    33   6.7  
tr|A3BAQ1|A3BAQ1_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.7  
tr|Q1M2Q0|Q1M2Q0_9ACTO Putative uncharacterized protein OS=Arcan...    33   6.9  
tr|B6PXE3|B6PXE3_BRAFL Putative uncharacterized protein (Fragmen...    33   6.9  
tr|Q9FIU5|Q9FIU5_ARATH Serine/threonine-specific protein kinase-...    33   8.8  
tr|Q93ZP7|Q93ZP7_ARATH AT5g54590/MRB17_9 OS=Arabidopsis thaliana...    33   8.8  
tr|Q6ZKI6|Q6ZKI6_ORYSJ Os08g0138700 protein OS=Oryza sativa subs...    33   8.8  
tr|A7P113|A7P113_VITVI Chromosome chr19 scaffold_4, whole genome...    33   8.8  
tr|A2YR26|A2YR26_ORYSI Putative uncharacterized protein OS=Oryza...    33   8.8  
tr|B4NFR3|B4NFR3_DROWI GK22688 OS=Drosophila willistoni GN=GK226...    33   8.8  
tr|B6LEG1|B6LEG1_BRAFL Putative uncharacterized protein OS=Branc...    33   9.0  

>tr|A7PAF9|A7PAF9_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038097001
           PE=4 SV=1
          Length = 424

 Score = 38.9 bits (89), Expect = 0.16
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 411 FWSNRSQDHSSLSPERRLTLFSYKQLQRATNNFTTLIGK 527
           FW +   D   L+    +  +SYK +Q+AT+NFTT++G+
Sbjct: 87  FWWSHRHDKDQLASASGIPRYSYKDIQKATHNFTTILGQ 125


>tr|B8LL62|B8LL62_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 443

 Score = 36.6 bits (83), Expect = 0.80
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
 Frame = +3

Query: 339 LSDSVV-----HQNHHHLHPDLLDIWPFSFWSNRSQDHSSLSPERRLTLFSYKQLQRATN 503
           LSDSV+     H +  + H         S+W  R  D + ++    +  +SYK LQ+AT+
Sbjct: 81  LSDSVIDDEAAHASRQNGHS--------SWW--RMHDKNFVTSASGIPRYSYKDLQKATH 130

Query: 504 NFTTLIGK 527
           NFTT+IG+
Sbjct: 131 NFTTVIGQ 138


>tr|Q40543|Q40543_TOBAC Protein-serine/threonine kinase OS=Nicotiana
           tabacum PE=2 SV=1
          Length = 422

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 16/40 (40%), Positives = 27/40 (67%)
 Frame = +3

Query: 408 SFWSNRSQDHSSLSPERRLTLFSYKQLQRATNNFTTLIGK 527
           S+WS+ S+ H   +    +  +SYK +Q+AT NFTT++G+
Sbjct: 87  SWWSHPSKVH--FASASGIPRYSYKDIQKATQNFTTILGQ 124


>tr|B8B0L9|B8B0L9_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_22555 PE=4 SV=1
          Length = 1223

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 324  NASMELSDSVVHQNHHHLHPDLLDIWPFSFWSNRSQDHSSLSPERRLT---LFSYKQLQR 494
            N+S+ LS   V  +  H  P       F  W   + + S   P   ++    + YK LQ+
Sbjct: 852  NSSVSLS---VASDWDHHPPPAKHAAAFWAWRGGANNGSHSPPPVSVSGIPKYHYKDLQK 908

Query: 495  ATNNFTTLIGK 527
            ATNNFTT++G+
Sbjct: 909  ATNNFTTILGQ 919


>tr|Q5VMR6|Q5VMR6_ORYSJ Putative uncharacterized protein
           OSJNBa0021H05.27 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0021H05.27 PE=4 SV=1
          Length = 519

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 324 NASMELSDSVVHQNHHHLHPDLLDIWPFSFWSNRSQDHSSLSPERRLT---LFSYKQLQR 494
           N+S+ LS   V  +  H  P       F  W   + + S   P   ++    + YK LQ+
Sbjct: 148 NSSVSLS---VASDWDHHPPPAKRAAAFWAWRGGANNGSHSPPPVSVSGIPKYHYKDLQK 204

Query: 495 ATNNFTTLIGK 527
           ATNNFTT++G+
Sbjct: 205 ATNNFTTILGQ 215


>tr|Q0DCW3|Q0DCW3_ORYSJ Os06g0283300 protein OS=Oryza sativa subsp.
           japonica GN=Os06g0283300 PE=4 SV=1
          Length = 452

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 324 NASMELSDSVVHQNHHHLHPDLLDIWPFSFWSNRSQDHSSLSPERRLT---LFSYKQLQR 494
           N+S+ LS   V  +  H  P       F  W   + + S   P   ++    + YK LQ+
Sbjct: 63  NSSVSLS---VASDWDHHPPPAKRAAAFWAWRGGANNGSHSPPPVSVSGIPKYHYKDLQK 119

Query: 495 ATNNFTTLIGK 527
           ATNNFTT++G+
Sbjct: 120 ATNNFTTILGQ 130


>tr|A9RGI5|A9RGI5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_174634 PE=4 SV=1
          Length = 458

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 408 SFWSNRSQDHSSLSPERRLTLFSYKQLQRATNNFTTLIGK 527
           S+W    Q+   +     +T F+YK+L +AT+NFT L+G+
Sbjct: 102 SWWGG--QEKQLIPSSLGVTKFTYKELHKATSNFTALVGQ 139


>tr|A3BAQ1|A3BAQ1_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_020123 PE=4 SV=1
          Length = 1253

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 324  NASMELSDSVVHQNHHHLHPDLLDIWPFSFWSNRSQDHSSLSPERRLT---LFSYKQLQR 494
            N+S+ LS   V  +  H  P       F  W   + + S   P   ++    + YK LQ+
Sbjct: 882  NSSVSLS---VASDWDHHPPPAKRAAAFWAWRGGANNGSHSPPPVSVSGIPKYHYKDLQK 938

Query: 495  ATNNFTTLIGK 527
            ATNNFTT++G+
Sbjct: 939  ATNNFTTILGQ 949


>tr|Q1M2Q0|Q1M2Q0_9ACTO Putative uncharacterized protein
           OS=Arcanobacterium pyogenes PE=4 SV=1
          Length = 209

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 456 FQVISLNGLVNDY--SKRKRAIYQAGPXXXXXXXXALPNLITPCSHCIPCARIRQRIRP 286
           F    L GL+ D+   +R RAIY  G          L  +++PC+ CIPC++ + R RP
Sbjct: 47  FDYWKLQGLLEDHYGKERGRAIYH-GLMENSGLLGNLAPVLSPCNQCIPCSK-QMRHRP 103


>tr|B6PXE3|B6PXE3_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_140052 PE=4 SV=1
          Length = 171

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 186 RKCDSYTCSCAT-LYAACPCSTQVIVILLAWRPCCTERRCKAQELWI*RRC 37
           R C +Y   CAT LY  C    +V++ + + RPCCT     A  L++  RC
Sbjct: 114 RLCCTYDAVCATVLYLRCGLCDRVVLTMRSVRPCCTYDAVCATVLYL--RC 162