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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959826
Clone id TST39A01NGRL0005_L23
Library
Length 229
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_L23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAGAATGTAGCATTTGGCGCAAAGAATAAGGTTGCTCAGCAAGGCCCTCCTCGACTGCG
TGAGCAAGAGTCTGCTGAAGCAGGAGGGCCTTCGCCGATTTCAGATCTTGATGAAGGTTC
AGAGCCAGTTAAGAAGTTGCAAGTTGTCAAGGCTTCTGTAGGTGAAAACAAGGAAGAAAG
TGGTGAAAGGCTTGAACCAGATAGCTTCTCAGTCAGCATAAATGAGCCG
■■Homology search results ■■ -
sp_hit_id Q7TSI3
Definition sp|Q7TSI3|SAPS1_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 1 OS=Mus musculus
Align length 62
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959826|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_L23, 5'
         (229 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TSI3|SAPS1_MOUSE Serine/threonine-protein phosphatase 6 reg...    31   2.2  
sp|P15593|RTP1_TRYBG Retrotransposable element SLACS 45 kDa prot...    31   2.2  
sp|Q3SXY8|AR13B_HUMAN ADP-ribosylation factor-like protein 13B O...    30   2.9  
sp|Q6DR03|ZDHC3_ARATH Probable S-acyltransferase At2g33640 OS=Ar...    30   5.0  
sp|Q32PF3|PCNP_BOVIN PEST proteolytic signal-containing nuclear ...    30   5.0  
sp|Q94GL5|HOX23_ORYSJ Homeobox-leucine zipper protein HOX23 OS=O...    30   5.0  
sp|A2Z734|HOX23_ORYSI Homeobox-leucine zipper protein HOX23 OS=O...    30   5.0  
sp|Q5RCI9|PCNP_PONAB PEST proteolytic signal-containing nuclear ...    29   6.5  
sp|P54938|NFM_RABIT Neurofilament medium polypeptide (Fragment) ...    29   6.5  
sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1 O...    29   6.5  
sp|Q80XI1|FBX34_MOUSE F-box only protein 34 OS=Mus musculus GN=F...    29   6.5  
sp|Q9DBR2|FA13C_MOUSE Protein FAM13C1 OS=Mus musculus GN=Fam13c1...    29   6.5  
sp|Q9Y6J0|CABIN_HUMAN Calcineurin-binding protein cabin-1 OS=Hom...    29   6.5  
sp|Q640N2|AR13B_MOUSE ADP-ribosylation factor-like protein 13B O...    29   6.5  
sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculu...    29   6.5  

>sp|Q7TSI3|SAPS1_MOUSE Serine/threonine-protein phosphatase 6
           regulatory subunit 1 OS=Mus musculus GN=Saps1 PE=1 SV=1
          Length = 856

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +2

Query: 44  GPPRLREQESAEAGGPSPISDLDEGSEPVKKLQVVKASVGENKEESGERLEPDSFSVSIN 223
           G P+LR Q+      P  ++D  + +EP+   Q + +         G R  P S   +  
Sbjct: 744 GSPQLRSQDPTHPSAPQEVTDSSKVAEPLAPCQALVSVADVQATLHGMRSAPSSLDSATR 803

Query: 224 EP 229
           +P
Sbjct: 804 DP 805


>sp|P15593|RTP1_TRYBG Retrotransposable element SLACS 45 kDa protein
           OS=Trypanosoma brucei gambiense PE=4 SV=1
          Length = 404

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 126 GSEPSSRSEIGEGPPASADSCSRSRGGP 43
           G  P++RS IG G P S   C RS G P
Sbjct: 377 GDYPNARSGIGTGAPHSPHHCDRSAGPP 404


>sp|Q3SXY8|AR13B_HUMAN ADP-ribosylation factor-like protein 13B
           OS=Homo sapiens GN=ARL13B PE=1 SV=1
          Length = 428

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 62  EQESAEAGGPSPISDLDEGSEPVKKLQVVKASVGEN-----KEESGERLEPDS 205
           EQE AE  G S +++LD   EP    Q + + + EN     +E+  +++E DS
Sbjct: 234 EQEQAELDGTSGLAELD--PEPTNPFQPIASVIIENEGKLEREKKNQKMEKDS 284


>sp|Q6DR03|ZDHC3_ARATH Probable S-acyltransferase At2g33640
           OS=Arabidopsis thaliana GN=At2g33640 PE=2 SV=1
          Length = 565

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 135 FLTGSEPSSRSEIGEGPPASADSCSRSRGG 46
           + T S  S RS  G G PA ++SCS S  G
Sbjct: 410 YKTSSNVSGRSSPGRGKPADSESCSLSSPG 439


>sp|Q32PF3|PCNP_BOVIN PEST proteolytic signal-containing nuclear
           protein OS=Bos taurus GN=PCNP PE=2 SV=1
          Length = 178

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 20  AKNKVAQQGPPRLREQESAEAGGPSPISDLDEGSEPVKKLQVVKASVGENKEESGER 190
           A  K  ++ P +   Q +  AGGP      +E  +PVK   V  ++ GEN   S E+
Sbjct: 2   ADGKAGEEKPEK--PQRAGAAGGPE-----EEAEKPVKTKTVSSSNGGENSSRSAEK 51


>sp|Q94GL5|HOX23_ORYSJ Homeobox-leucine zipper protein HOX23
           OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1
          Length = 351

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
 Frame = +2

Query: 47  PPRLREQESAEAGGPSPISDLDE----------GSEPVKKLQVVKASVGENKEESGERLE 196
           PP + E    + GG    S+ +E          G E  ++L V +    E   ESG +LE
Sbjct: 68  PPPMYEASGGDGGGGGAASEDEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLE 127

Query: 197 PD 202
           P+
Sbjct: 128 PE 129


>sp|A2Z734|HOX23_ORYSI Homeobox-leucine zipper protein HOX23
           OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1
          Length = 351

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
 Frame = +2

Query: 47  PPRLREQESAEAGGPSPISDLDE----------GSEPVKKLQVVKASVGENKEESGERLE 196
           PP + E    + GG    S+ +E          G E  ++L V +    E   ESG +LE
Sbjct: 68  PPPMYEASGGDGGGGGAASEDEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLE 127

Query: 197 PD 202
           P+
Sbjct: 128 PE 129


>sp|Q5RCI9|PCNP_PONAB PEST proteolytic signal-containing nuclear
           protein OS=Pongo abelii GN=PCNP PE=2 SV=1
          Length = 178

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 20  AKNKVAQQGPPRLREQESAEAGGPSPISDLDEGSEPVKKLQVVKASVGENKEESGERLEP 199
           A  K  ++ P +   Q +  AGGP      +E  +PVK   V  ++ GE+   S E+   
Sbjct: 2   ADGKAGEEKPEK--SQRAGAAGGPE-----EEAEKPVKTKTVSSSNGGESSSRSAEKRSA 54

Query: 200 DSFSVSI 220
           +  +V +
Sbjct: 55  EEEAVDL 61


>sp|P54938|NFM_RABIT Neurofilament medium polypeptide (Fragment)
           OS=Oryctolagus cuniculus GN=NEFM PE=2 SV=1
          Length = 644

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 2   KNVAFGAKNKVAQQGPPRLREQESAEAG--GPSPISDLDEGSEPVKKLQVVKASVGENKE 175
           K    G + +  +   P  +E+E  +AG  G S     D+GS+  KK  +     GE KE
Sbjct: 480 KPTKVGLEKETKEGEKPLQQEKEKEKAGEEGGSEEEGSDQGSKRAKKEDIAVNGEGEGKE 539

Query: 176 E 178
           E
Sbjct: 540 E 540


>sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1
           OS=Rattus norvegicus GN=Mdc1 PE=2 SV=2
          Length = 1279

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 5   NVAFGAKNKVAQQG--PPRLREQESAEAGGPSPISDLDEGSEPVKKLQVVKASVGENKEE 178
           +V  G K++V  +G  PP    + + + G  SP++D+    +PV +    + +   ++++
Sbjct: 519 SVTLGEKHQVPLEGAQPPEEARETAVQEGSSSPVADIRMSQQPVAEDAGTECAAAVSEQK 578

Query: 179 S 181
           S
Sbjct: 579 S 579
tr_hit_id A1XX44
Definition tr|A1XX44|A1XX44_9MAGN Chloroplast bromodomain-containing protein (Fragment) OS=Pachysandra terminalis
Align length 48
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959826|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_L23, 5'
         (229 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1XX44|A1XX44_9MAGN Chloroplast bromodomain-containing protei...    37   0.64 
tr|B7PEY9|B7PEY9_IXOSC Lysyl-tRNA synthetase, putative OS=Ixodes...    34   3.2  
tr|Q6CKE0|Q6CKE0_KLULA KLLA0F11396p OS=Kluyveromyces lactis GN=K...    34   3.2  
tr|B8ETE9|B8ETE9_METSI RNA-binding S4 domain protein OS=Methyloc...    33   7.1  

>tr|A1XX44|A1XX44_9MAGN Chloroplast bromodomain-containing protein
           (Fragment) OS=Pachysandra terminalis PE=2 SV=1
          Length = 428

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 65  QESAEAGGPSPISDLDEGSEPVKKLQVVKASVGENKEESGERLEPDSF 208
           Q +AE G  SP+SD  E +E     ++ K  +GE   + GE +   +F
Sbjct: 320 QNTAEEGNKSPVSDSHEAAEAASAKKIKKGEIGEEDVDIGEEIPTSNF 367


>tr|B7PEY9|B7PEY9_IXOSC Lysyl-tRNA synthetase, putative OS=Ixodes
           scapularis GN=IscW_ISCW018044 PE=4 SV=1
          Length = 580

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +2

Query: 20  AKNKVAQQGPPRLREQESAEAGGPSPISDL---DEGSEPVKKLQVVKASVGENKEESGER 190
           AK K  ++   R +E E A AGGP P S     +E  +P +  ++  A+V + K E+G+ 
Sbjct: 41  AKEKAEKEKLKREQESEKASAGGPKPESAAAQDEETMDPNEFFRLRSAAVAQLK-EAGDH 99

Query: 191 LEPDSFSVS 217
             P  F VS
Sbjct: 100 PYPHKFHVS 108


>tr|Q6CKE0|Q6CKE0_KLULA KLLA0F11396p OS=Kluyveromyces lactis
           GN=KLLA0F11396g PE=4 SV=1
          Length = 199

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/65 (36%), Positives = 38/65 (58%)
 Frame = +2

Query: 35  AQQGPPRLREQESAEAGGPSPISDLDEGSEPVKKLQVVKASVGENKEESGERLEPDSFSV 214
           AQ+  P  +E+E A+   P+   +  + +EPV K +V++ SV E  EES   +E +S  V
Sbjct: 58  AQEEEPA-QEEEPAQEEEPAQEEEPAQETEPVVK-EVIEESVKEEIEESEPVIEENSEDV 115

Query: 215 SINEP 229
           + NEP
Sbjct: 116 AENEP 120


>tr|B8ETE9|B8ETE9_METSI RNA-binding S4 domain protein
           OS=Methylocella silvestris BL2 GN=Msil_2874 PE=4 SV=1
          Length = 676

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 23  KNKVAQQGPPRLREQESAEAGGPSPISDLDEGSEPVKKLQVVKASVGENKEESGERLEP 199
           +++  ++ PPRLR++ +A+ GG     D   G+E  +K    + S G   E  G+R  P
Sbjct: 429 RSQAREEAPPRLRDRAAADGGGRRRGPDRAGGAEDDRK---KRESAGAGTEPRGKRATP 484