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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959828
Clone id TST39A01NGRL0005_M01
Library
Length 635
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_M01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCATGGAGAGGGGACTCGAGTTAAGGTGTGCGACAATTTGGCATGGACTACTACCATCAC
GTCATCCATTGGTTTCACAACAAAGCACTCCATACAAGAGCAGCTTCTCTACTCATTGCT
CAACAGCTTCATCTTTCAGATTTTCCTGCAGTTCCAGCCAAAATCAAGTTTGGCCTGACC
CTGCTGTGGCTTATTGTCATGCAAACCCAAGCGCGATCTTTGAAGCTACTCATGGGTTTG
CTAGAGGCACAAGTCTTCCAAATGGTGGTGTTTTGAGGAGAGATGCTATGGCCTCAAGCC
TACTAGATGGTTCTTGGAATGTGGCATGGGATGCAAGGCCCGCACGGTGGCTTCATGGGC
GGAACTCTGCATGGCTTTTGTTTGGTGCATGCAGTTGCTTCTCCGCAGTATCCAACCTTC
CAGCAAGTCCAAGCATTCTACCCGCCTCTCTCGTGTGTCTCAATGAGAAGGTGGATGAGA
AGCAGCATGCATCTTTGGATAACGGCTCCNATCTTGAAGTTGCTCTTATGTCCAATCCCC
TCCTACAAAGGAAAACCTCTCTTGGCTATACTGTCATTGGTATGCCTAGTGATGGCCGGT
GCCTCTTTCGTGCCATTGCTTATGGTGCTTCACTG
■■Homology search results ■■ -
sp_hit_id P22856
Definition sp|P22856|VL96_IRV1 L96 protein OS=Tipula iridescent virus
Align length 68
Score (bit) 32.7
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959828|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_M01, 5'
         (635 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P22856|VL96_IRV1 L96 protein OS=Tipula iridescent virus GN=L9...    33   1.6  
sp|A4XT53|COBQ_PSEMY Cobyric acid synthase OS=Pseudomonas mendoc...    32   2.7  
sp|Q1J0P9|RLMN_DEIGD Ribosomal RNA large subunit methyltransfera...    32   3.6  
sp|B0KT65|COBQ_PSEPG Cobyric acid synthase OS=Pseudomonas putida...    32   3.6  
sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopu...    31   4.7  
sp|P47016|NIT2_YEAST Probable hydrolase NIT2 OS=Saccharomyces ce...    30   8.0  
sp|Q88M97|COBQ_PSEPK Cobyric acid synthase OS=Pseudomonas putida...    30   8.0  
sp|A5W7Q6|COBQ_PSEP1 Cobyric acid synthase OS=Pseudomonas putida...    30   8.0  
sp|Q9I467|COBQ_PSEAE Cobyric acid synthase OS=Pseudomonas aerugi...    30   8.0  
sp|Q02JB8|COBQ_PSEAB Cobyric acid synthase OS=Pseudomonas aerugi...    30   8.0  
sp|A6V8T2|COBQ_PSEA7 Cobyric acid synthase OS=Pseudomonas aerugi...    30   8.0  

>sp|P22856|VL96_IRV1 L96 protein OS=Tipula iridescent virus GN=L96
           PE=4 SV=1
          Length = 867

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +3

Query: 414 NLPASPSILPASLVCLNEKVDEKQHASLDNGSXLEVALMSNPLLQRKTSLGYTVIGMPSD 593
           ++   PS+ P S V + ++ +  ++   +    LE+      L +R+   GY VI +  D
Sbjct: 564 SITVDPSVTPPSSVKIKKRPELPEYKGGNADRDLEI------LARRR---GYKVIPVKGD 614

Query: 594 GRCLFRAI 617
           G CLFRA+
Sbjct: 615 GNCLFRAV 622


>sp|A4XT53|COBQ_PSEMY Cobyric acid synthase OS=Pseudomonas mendocina
           (strain ymp) GN=cobQ PE=3 SV=1
          Length = 483

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -2

Query: 460 RHTREAGRMLGLAGRLDTAEKQLHAPNKSHAEFRP*SHRAGLASHATFQEPSSRLEAIAS 281
           RH R  G++LG+ G L    +Q+H P+         S   GL    T  EP  +L  +  
Sbjct: 317 RHLRYGGKLLGICGGLQMLGRQIHDPHGLEGAAGS-SEGLGLLDFETVLEPEKQLRNVRG 375

Query: 280 LL 275
            L
Sbjct: 376 QL 377


>sp|Q1J0P9|RLMN_DEIGD Ribosomal RNA large subunit methyltransferase
           N OS=Deinococcus geothermalis (strain DSM 11300) GN=rlmN
           PE=3 SV=1
          Length = 344

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
 Frame = +3

Query: 372 WLLFGACSCFSAVSNLPASPSILPASLVCLN--EKVDEKQHA--------SLDNGSXLEV 521
           W+       F A++NLPA      AS   LN   +++  + A        +L +G  +E 
Sbjct: 25  WVFVQGVGTFEAMTNLPAQARADLASRFRLNPFREIETVRSADGSVKYLFTLQDGRQMEA 84

Query: 522 ALMSNPLLQRKTSLGYTVIGMPSD-GRCLFRAIAYGASL 635
             M  P L RKT    T++G P+    C   A+ +G +L
Sbjct: 85  VYM--PYLDRKTICVSTMVGCPAKCAFCATGAMGFGRNL 121


>sp|B0KT65|COBQ_PSEPG Cobyric acid synthase OS=Pseudomonas putida
           (strain GB-1) GN=cobQ PE=3 SV=1
          Length = 484

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 460 RHTREAGRMLGLAGRLDTAEKQLHAPNKSHAEFRP*SHRAGLASHATFQEPSSRLEAIAS 281
           RH R  G+++G+ G L    +Q+H P          S   GL  +AT  E   +L  +A 
Sbjct: 317 RHLRYGGKLIGICGGLQMLGRQVHDPLGLEGAAGS-SQGLGLLDYATVLEAEKQLRNVAG 375

Query: 280 LL 275
            L
Sbjct: 376 TL 377


>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus
           tropicalis GN=otud6b PE=2 SV=1
          Length = 294

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 462 NEKVDEKQHASLDNGSXLEVALMSNPLLQRKTSLGYTVIGMPSDGRCLFRAIAY 623
           +E++ E + A+L     LE   ++  L +R+  +      +PSDG C++RAI +
Sbjct: 119 DERIAEAEIANLSGARHLESQKLARILAERELQIRQ----IPSDGHCMYRAIEH 168


>sp|P47016|NIT2_YEAST Probable hydrolase NIT2 OS=Saccharomyces
           cerevisiae GN=NIT2 PE=2 SV=1
          Length = 307

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
 Frame = -2

Query: 502 LSKDACCFSSTFSLRHTREAGRMLGLAGRLDTA-----EKQLHAPNKSHAEFRP*SHRAG 338
           +  +  CF S F+++       +LG A  +DT        Q+   + S  E+   SH + 
Sbjct: 184 MGAEILCFPSAFTIKTGEAHWELLGRARAVDTQCYVLMPGQVGMHDLSDPEWEKQSHMSA 243

Query: 337 LASHATFQEPSSRLEAIASLLKTPPFGRLVPLANP 233
           L       E SSR E+    +   P+G+++  A+P
Sbjct: 244 L-------EKSSRRESWGHSMVIDPWGKIIAHADP 271


>sp|Q88M97|COBQ_PSEPK Cobyric acid synthase OS=Pseudomonas putida
           (strain KT2440) GN=cobQ PE=3 SV=1
          Length = 484

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 460 RHTREAGRMLGLAGRLDTAEKQLHAPNKSHAEFRP*SHRAGLASHATFQEPSSRLEAIAS 281
           RH R  G+++G+ G L    +++H P          S   GL  +AT  E   +L  +A 
Sbjct: 317 RHLRYGGKLIGICGGLQMLGREVHDPLGLEGAAGS-SQGLGLLDYATVLEAEKQLRNVAG 375

Query: 280 LL 275
            L
Sbjct: 376 TL 377


>sp|A5W7Q6|COBQ_PSEP1 Cobyric acid synthase OS=Pseudomonas putida
           (strain F1 / ATCC 700007) GN=cobQ PE=3 SV=1
          Length = 484

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 460 RHTREAGRMLGLAGRLDTAEKQLHAPNKSHAEFRP*SHRAGLASHATFQEPSSRLEAIAS 281
           RH R  G+++G+ G L    +++H P          S   GL  +AT  E   +L  +A 
Sbjct: 317 RHLRYGGKLIGICGGLQMLGREVHDPLGLEGAAGS-SQGLGLLDYATVLEAEKQLRNVAG 375

Query: 280 LL 275
            L
Sbjct: 376 TL 377


>sp|Q9I467|COBQ_PSEAE Cobyric acid synthase OS=Pseudomonas
           aeruginosa GN=cobQ PE=3 SV=1
          Length = 490

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 463 LRHTREAGRMLGLAGRLDTAEKQLHAP 383
           LRH R  GR+LG+ G L    ++LH P
Sbjct: 320 LRHLRYGGRLLGICGGLQMLGERLHDP 346


>sp|Q02JB8|COBQ_PSEAB Cobyric acid synthase OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=cobQ PE=3 SV=1
          Length = 490

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 463 LRHTREAGRMLGLAGRLDTAEKQLHAP 383
           LRH R  GR+LG+ G L    ++LH P
Sbjct: 320 LRHLRYGGRLLGICGGLQMLGERLHDP 346
tr_hit_id A9SFY8
Definition tr|A9SFY8|A9SFY8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 123
Score (bit) 105.0
E-value 2.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959828|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_M01, 5'
         (635 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SFY8|A9SFY8_PHYPA Predicted protein OS=Physcomitrella paten...   105   2e-21
tr|B8LMJ1|B8LMJ1_PICSI Putative uncharacterized protein OS=Picea...    97   8e-19
tr|A7QBI6|A7QBI6_VITVI Chromosome chr13 scaffold_74, whole genom...    95   3e-18
tr|Q2PEU4|Q2PEU4_TRIPR Putative uncharacterized protein OS=Trifo...    81   6e-14
tr|A5AJL3|A5AJL3_VITVI Putative uncharacterized protein OS=Vitis...    41   0.053
tr|Q0J0Q7|Q0J0Q7_ORYSJ Os09g0487700 protein OS=Oryza sativa subs...    40   0.15 
tr|B8BCW0|B8BCW0_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.15 
tr|A9U337|A9U337_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.20 
tr|Q8LBZ4|Q8LBZ4_ARATH Putative uncharacterized protein (At3g578...    38   0.45 
tr|Q682S6|Q682S6_ARATH Putative uncharacterized protein At3g5781...    38   0.45 
tr|Q67XW3|Q67XW3_ARATH Putative uncharacterized protein At3g5781...    38   0.45 
tr|B8B8J9|B8B8J9_ORYSI Putative uncharacterized protein OS=Oryza...    37   1.3  
tr|B6TU32|B6TU32_MAIZE OTU-like cysteine protease family protein...    37   1.3  
tr|B4FF42|B4FF42_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.3  
tr|Q6Z3T8|Q6Z3T8_ORYSJ Os08g0506000 protein OS=Oryza sativa subs...    36   1.7  
tr|A2YWU0|A2YWU0_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.7  
tr|B6N324|B6N324_BRAFL Putative uncharacterized protein OS=Branc...    36   2.2  
tr|A3A0L3|A3A0L3_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.9  
tr|Q2KYV1|Q2KYV1_BORA1 Putative amidohydrolase/peptidase/deacety...    34   6.5  
tr|Q7F1Y0|Q7F1Y0_ORYSJ B1065G12.4 protein OS=Oryza sativa subsp....    34   6.5  
tr|A2QL51|A2QL51_ASPNC Contig An05c0060, complete genome OS=Aspe...    34   8.4  
tr|A6UR72|A6UR72_METVS Glutamate synthase alpha subunit domain p...    34   8.4  

>tr|A9SFY8|A9SFY8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_211921 PE=4 SV=1
          Length = 289

 Score =  105 bits (262), Expect = 2e-21
 Identities = 56/123 (45%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
 Frame = +3

Query: 279 RDAMASSLLDGSWNVAWDARPARWLHGRNSAWLLFGACSCFSAVS----NLPASPSILPA 446
           R AMA  L +GSWNVAWDARPARWLHGR+SAWLLFG C+CFSA +       +SP +  A
Sbjct: 42  RTAMAGCLSEGSWNVAWDARPARWLHGRHSAWLLFGVCACFSAAAVPLITAESSPVVAEA 101

Query: 447 SLVCLNEKVDEKQHASLDNGSXLEVALMSNPLLQRKTSLGYTVIGMPSDGRCLFRAIAYG 626
            +  L          +      L      +    ++    YTV G+P DGRCLFRA+A+G
Sbjct: 102 VVDSLPPPTALSDPENKSADPTLVTPQTEHCGHGKEIITDYTVTGIPGDGRCLFRAVAHG 161

Query: 627 ASL 635
           + L
Sbjct: 162 SCL 164


>tr|B8LMJ1|B8LMJ1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 411

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 48/110 (43%), Positives = 66/110 (60%)
 Frame = +3

Query: 306 DGSWNVAWDARPARWLHGRNSAWLLFGACSCFSAVSNLPASPSILPASLVCLNEKVDEKQ 485
           +GSWN  WD RPARWLHG +SAWLLFG C+CFS++     +P+   A  V +   +DE  
Sbjct: 192 EGSWNATWDVRPARWLHGSHSAWLLFGVCACFSSL-----NPAHSEAETVEVVAGIDEN- 245

Query: 486 HASLDNGSXLEVALMSNPLLQRKTSLGYTVIGMPSDGRCLFRAIAYGASL 635
              ++N     +         +K  + Y+V  +P DGRCLFRA+A+GASL
Sbjct: 246 --DVNNALDDAIPAADQASHGKKVYIDYSVTAIPGDGRCLFRAVAHGASL 293


>tr|A7QBI6|A7QBI6_VITVI Chromosome chr13 scaffold_74, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034988001
           PE=4 SV=1
          Length = 317

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
 Frame = +3

Query: 255 LPNGGVLRRDAMASSLL-----DGSWNVAWDARPARWLHGRNSAWLLFGACSCFSAVSNL 419
           LP+GG  RR ++  +LL     +GSWNVAWDARPARWLH  +SAWLLFG C+C + + + 
Sbjct: 76  LPSGGD-RRSSLRPALLHDQKGEGSWNVAWDARPARWLHRPDSAWLLFGVCACLAPLDSF 134

Query: 420 PASPSILPASLVCLNEKVDEKQHASLDNGSXLEVALMSNPLLQRKTSLGYTVIGMPSDGR 599
                +     V +++K++     +       E++  +N      +S  Y V G+P+DGR
Sbjct: 135 DVDNEV-----VAVDDKIEGCNQVN-------EISDENN-----NSSADYRVTGVPADGR 177

Query: 600 CLFRAIAYGASL 635
           CLFRAIA+ A L
Sbjct: 178 CLFRAIAHSACL 189


>tr|Q2PEU4|Q2PEU4_TRIPR Putative uncharacterized protein
           OS=Trifolium pratense PE=2 SV=1
          Length = 326

 Score = 80.9 bits (198), Expect = 6e-14
 Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
 Frame = +3

Query: 306 DGSWNVAWDARPARWLHGRNSAWLLFGACSCFSAVSNL-PASPSI-LPASLVCLNEKVDE 479
           +GSWNVAWDARPARWLH  +SAWLLFG  +  +    +    P + LP S++  +E    
Sbjct: 98  EGSWNVAWDARPARWLHRSDSAWLLFGVRAWLAPPPVIVDVDPEVPLPTSVISPDE---- 153

Query: 480 KQHASLDNGSXLEVALMSNPLLQRKTSLGYTVIGMPSDGRCLFRAIAYGASL 635
                +     LE+    +     + S  Y V G+ +DGRCLFRA+A+GA L
Sbjct: 154 -----ISRSEGLEIKDAESDKPNDELSSDYRVTGVLADGRCLFRALAHGACL 200


>tr|A5AJL3|A5AJL3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002512 PE=4 SV=1
          Length = 806

 Score = 41.2 bits (95), Expect = 0.053
 Identities = 26/96 (27%), Positives = 42/96 (43%)
 Frame = +3

Query: 348 WLHGRNSAWLLFGACSCFSAVSNLPASPSILPASLVCLNEKVDEKQHASLDNGSXLEVAL 527
           W  G  SA L+F    C+S+   + A  +          +K ++K+     N        
Sbjct: 608 WPQGCASAGLMFALLVCYSSSEPVHAESA----------QKKEDKKGECYTNSHG----- 652

Query: 528 MSNPLLQRKTSLGYTVIGMPSDGRCLFRAIAYGASL 635
                  +K    Y++ G+P DGRCLFR++ +GA L
Sbjct: 653 -------KKVYTDYSITGIPGDGRCLFRSVVHGACL 681


>tr|Q0J0Q7|Q0J0Q7_ORYSJ Os09g0487700 protein OS=Oryza sativa subsp.
           japonica GN=Os09g0487700 PE=2 SV=1
          Length = 306

 Score = 39.7 bits (91), Expect = 0.15
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 549 RKTSLGYTVIGMPSDGRCLFRAIAYGASL 635
           +K    Y+V G+P DGRCLFR++A+GA +
Sbjct: 154 KKVCTDYSVTGIPGDGRCLFRSVAHGACI 182


>tr|B8BCW0|B8BCW0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_31841 PE=4 SV=1
          Length = 369

 Score = 39.7 bits (91), Expect = 0.15
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 549 RKTSLGYTVIGMPSDGRCLFRAIAYGASL 635
           +K    Y+V G+P DGRCLFR++A+GA +
Sbjct: 217 KKVCTDYSVTGIPGDGRCLFRSVAHGACI 245


>tr|A9U337|A9U337_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_33766 PE=4 SV=1
          Length = 161

 Score = 39.3 bits (90), Expect = 0.20
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +3

Query: 549 RKTSLGYTVIGMPSDGRCLFRAIAYGASL 635
           +K    + V G+P DGRCLFRA+A+GA L
Sbjct: 20  KKVHFDFHVTGVPGDGRCLFRAVAHGACL 48


>tr|Q8LBZ4|Q8LBZ4_ARATH Putative uncharacterized protein (At3g57810)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 317

 Score = 38.1 bits (87), Expect = 0.45
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = +3

Query: 567 YTVIGMPSDGRCLFRAIAYGASL 635
           Y++IG+P DGRCLFR++A+G  L
Sbjct: 168 YSIIGIPGDGRCLFRSVAHGFCL 190


>tr|Q682S6|Q682S6_ARATH Putative uncharacterized protein At3g57810
           OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1
          Length = 274

 Score = 38.1 bits (87), Expect = 0.45
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = +3

Query: 567 YTVIGMPSDGRCLFRAIAYGASL 635
           Y++IG+P DGRCLFR++A+G  L
Sbjct: 125 YSIIGIPGDGRCLFRSVAHGFCL 147