DK959855 |
Clone id |
TST39A01NGRL0005_N04 |
Library |
TST39 |
Length |
558 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_N04. 5' end sequence. |
Accession |
DK959855 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL94Contig1 |
Sequence |
TGAGGAATACACATACGAATATCGAGCTCTGGTCTTCCTCCTTTCTCGATATCTGAGCTT TTCGGCTATTGCGTCCTGTAACTTCAGTCACTGCCCTTATTCTAACCCTGACAATCACCG TGTGTTTGCCAAGTACACCCTCTTCTTCTGTATCTGCAGCTCCACCTTCAACGCGTGGTT AACGATCTTCGGCCTCTTTCTGTGAAGCTCAGATTTCTAGGAAGGAGATACGTCGCTCTT CGAGGTGTTGCTTCTCACAGAAGAGTGCTCCTTCTTGTTCGTGCTGCTCTTGAAAAGTGA GAGAGCAATAAGCCGCATGTGAACATCGCCACTATTGGCCATGTCGACCACGGGAAAACG ACTCTCACTGCTGCCCTCACAATGGCTGCAGCGTCTGAGCTAGGGAGTGCTCCTAAAAGA TATGATCAGATTGATGCTGCCCCAGAGGAAAGAGCAAGAGGTATTACCATCAACACCGCA GTGGTCGAATATGAGTCTCCCAACAGACACTATGCACACGTGGACTGCCCTGGACATGCT GACTATGTGAAGAACATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P68158 |
Definition |
sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum |
Align length |
88 |
Score (bit) |
132.0 |
E-value |
9.0e-31 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959855|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_N04, 5' (558 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nico... 132 9e-31 sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Ni... 132 9e-31 sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Ni... 132 9e-31 sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 132 1e-30 sp|Q1LI13|EFTU_RALME Elongation factor Tu OS=Ralstonia metallidu... 131 3e-30 sp|Q46WC7|EFTU_RALEJ Elongation factor Tu OS=Ralstonia eutropha ... 131 3e-30 sp|Q0K5Z9|EFTU_RALEH Elongation factor Tu OS=Ralstonia eutropha ... 131 3e-30 sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 131 3e-30 sp|Q8XGZ0|EFTU_RALSO Elongation factor Tu OS=Ralstonia solanacea... 130 6e-30 sp|Q47JA5|EFTU_DECAR Elongation factor Tu OS=Dechloromonas aroma... 129 1e-29 sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlo... 129 1e-29 sp|A4JAM5|EFTU_BURVG Elongation factor Tu OS=Burkholderia vietna... 129 1e-29 sp|Q2SU25|EFTU_BURTA Elongation factor Tu OS=Burkholderia thaila... 129 1e-29 sp|Q63PZ6|EFTU_BURPS Elongation factor Tu OS=Burkholderia pseudo... 129 1e-29 sp|A3NEI1|EFTU_BURP6 Elongation factor Tu OS=Burkholderia pseudo... 129 1e-29 sp|Q3JMP6|EFTU_BURP1 Elongation factor Tu OS=Burkholderia pseudo... 129 1e-29 sp|A3P0B5|EFTU_BURP0 Elongation factor Tu OS=Burkholderia pseudo... 129 1e-29 sp|A1V8A5|EFTU_BURMS Elongation factor Tu OS=Burkholderia mallei... 129 1e-29 sp|Q62GK3|EFTU_BURMA Elongation factor Tu OS=Burkholderia mallei... 129 1e-29 sp|A2S7F9|EFTU_BURM9 Elongation factor Tu OS=Burkholderia mallei... 129 1e-29 sp|A3MRT8|EFTU_BURM7 Elongation factor Tu OS=Burkholderia mallei... 129 1e-29 sp|P42481|EFTU_THICU Elongation factor Tu OS=Thiobacillus cuprin... 128 2e-29 sp|A2SLF9|EFTU_METPP Elongation factor Tu OS=Methylibium petrole... 128 2e-29 sp|A4SUU7|EFTU_POLSQ Elongation factor Tu OS=Polynucleobacter sp... 128 2e-29 sp|Q123F6|EFTU_POLSJ Elongation factor Tu OS=Polaromonas sp. (st... 128 2e-29 sp|Q21RV6|EFTU2_RHOFD Elongation factor Tu 2 OS=Rhodoferax ferri... 128 2e-29 sp|Q21SF0|EFTU1_RHOFD Elongation factor Tu 1 OS=Rhodoferax ferri... 128 2e-29 sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arab... 127 3e-29 sp|A1WHC3|EFTU_VEREI Elongation factor Tu OS=Verminephrobacter e... 127 4e-29 sp|Q1KVS9|EFTU_SCEOB Elongation factor Tu, chloroplastic OS=Scen... 127 4e-29
>sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1 Length = 478
Score = 132 bits (333), Expect = 9e-31 Identities = 64/88 (72%), Positives = 67/88 (76%) Frame = +1
Query: 295 K*ESNKPHVNIATIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITIN 474 K E KPHVNI TIGHVDHGK S SAPK+YD+IDAAPEERARGITIN Sbjct: 74 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERARGITIN 133
Query: 475 TAVVEYESPNRHYAHVDCPGHADYVKNM 558 TA VEYE+ NRHYAHVDCPGHADYVKNM Sbjct: 134 TATVEYETENRHYAHVDCPGHADYVKNM 161
>sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1 Length = 485
Score = 132 bits (333), Expect = 9e-31 Identities = 64/88 (72%), Positives = 67/88 (76%) Frame = +1
Query: 295 K*ESNKPHVNIATIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITIN 474 K E KPHVNI TIGHVDHGK S SAPK+YD+IDAAPEERARGITIN Sbjct: 81 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERARGITIN 140
Query: 475 TAVVEYESPNRHYAHVDCPGHADYVKNM 558 TA VEYE+ NRHYAHVDCPGHADYVKNM Sbjct: 141 TATVEYETENRHYAHVDCPGHADYVKNM 168
>sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2 Length = 478
Score = 132 bits (333), Expect = 9e-31 Identities = 64/88 (72%), Positives = 67/88 (76%) Frame = +1
Query: 295 K*ESNKPHVNIATIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITIN 474 K E KPHVNI TIGHVDHGK S SAPK+YD+IDAAPEERARGITIN Sbjct: 74 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERARGITIN 133
Query: 475 TAVVEYESPNRHYAHVDCPGHADYVKNM 558 TA VEYE+ NRHYAHVDCPGHADYVKNM Sbjct: 134 TATVEYETENRHYAHVDCPGHADYVKNM 161
>sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1 Length = 479
Score = 132 bits (332), Expect = 1e-30 Identities = 64/88 (72%), Positives = 67/88 (76%) Frame = +1
Query: 295 K*ESNKPHVNIATIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITIN 474 K E KPHVNI TIGHVDHGK S SAPK+YD+IDAAPEERARGITIN Sbjct: 75 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITIN 134
Query: 475 TAVVEYESPNRHYAHVDCPGHADYVKNM 558 TA VEYE+ NRHYAHVDCPGHADYVKNM Sbjct: 135 TATVEYETENRHYAHVDCPGHADYVKNM 162
>sp|Q1LI13|EFTU_RALME Elongation factor Tu OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=tuf1 PE=3 SV=1 Length = 396
Score = 131 bits (329), Expect = 3e-30 Identities = 61/89 (68%), Positives = 68/89 (76%) Frame = +1
Query: 292 EK*ESNKPHVNIATIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITI 471 EK E KPHVN+ TIGHVDHGK ++ G A K+YD+IDAAPEE+ARGITI Sbjct: 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLAAKFGGAAKKYDEIDAAPEEKARGITI 63
Query: 472 NTAVVEYESPNRHYAHVDCPGHADYVKNM 558 NTA VEYE+ NRHYAHVDCPGHADYVKNM Sbjct: 64 NTAHVEYETANRHYAHVDCPGHADYVKNM 92
>sp|Q46WC7|EFTU_RALEJ Elongation factor Tu OS=Ralstonia eutropha (strain JMP134) GN=tuf1 PE=3 SV=1 Length = 396
Score = 131 bits (329), Expect = 3e-30 Identities = 61/89 (68%), Positives = 68/89 (76%) Frame = +1
Query: 292 EK*ESNKPHVNIATIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITI 471 EK E KPHVN+ TIGHVDHGK ++ G A K+YD+IDAAPEE+ARGITI Sbjct: 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLAAKFGGAAKKYDEIDAAPEEKARGITI 63
Query: 472 NTAVVEYESPNRHYAHVDCPGHADYVKNM 558 NTA VEYE+ NRHYAHVDCPGHADYVKNM Sbjct: 64 NTAHVEYETANRHYAHVDCPGHADYVKNM 92
>sp|Q0K5Z9|EFTU_RALEH Elongation factor Tu OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=tuf1 PE=3 SV=1 Length = 396
Score = 131 bits (329), Expect = 3e-30 Identities = 61/89 (68%), Positives = 68/89 (76%) Frame = +1
Query: 292 EK*ESNKPHVNIATIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITI 471 EK E KPHVN+ TIGHVDHGK ++ G A K+YD+IDAAPEE+ARGITI Sbjct: 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLAAKFGGAAKKYDEIDAAPEEKARGITI 63
Query: 472 NTAVVEYESPNRHYAHVDCPGHADYVKNM 558 NTA VEYE+ NRHYAHVDCPGHADYVKNM Sbjct: 64 NTAHVEYETANRHYAHVDCPGHADYVKNM 92
>sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1 Length = 479
Score = 131 bits (329), Expect = 3e-30 Identities = 63/88 (71%), Positives = 67/88 (76%) Frame = +1
Query: 295 K*ESNKPHVNIATIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITIN 474 K E KPHVNI TIGHVDHGK + SAPK+YD+IDAAPEERARGITIN Sbjct: 75 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITIN 134
Query: 475 TAVVEYESPNRHYAHVDCPGHADYVKNM 558 TA VEYE+ NRHYAHVDCPGHADYVKNM Sbjct: 135 TATVEYETENRHYAHVDCPGHADYVKNM 162
>sp|Q8XGZ0|EFTU_RALSO Elongation factor Tu OS=Ralstonia solanacearum GN=tufA PE=3 SV=1 Length = 396
Score = 130 bits (326), Expect = 6e-30 Identities = 60/89 (67%), Positives = 67/89 (75%) Frame = +1
Query: 292 EK*ESNKPHVNIATIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITI 471 EK E KPHVN+ TIGHVDHGK S+ G K+YD+IDAAPEE+ARGITI Sbjct: 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSSKFGGEAKKYDEIDAAPEEKARGITI 63
Query: 472 NTAVVEYESPNRHYAHVDCPGHADYVKNM 558 NTA +EYE+ NRHYAHVDCPGHADYVKNM Sbjct: 64 NTAHIEYETANRHYAHVDCPGHADYVKNM 92
>sp|Q47JA5|EFTU_DECAR Elongation factor Tu OS=Dechloromonas aromatica (strain RCB) GN=tuf1 PE=3 SV=1 Length = 396
Score = 129 bits (323), Expect = 1e-29 Identities = 60/89 (67%), Positives = 67/89 (75%) Frame = +1
Query: 292 EK*ESNKPHVNIATIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGITI 471 EK KPHVN+ TIGHVDHGK ++ G A K+YD+IDAAPEE+ARGITI Sbjct: 4 EKFARTKPHVNVGTIGHVDHGKTTLTAAITTVLSAKFGGAAKKYDEIDAAPEEKARGITI 63
Query: 472 NTAVVEYESPNRHYAHVDCPGHADYVKNM 558 NTA VEYE+ NRHYAHVDCPGHADYVKNM Sbjct: 64 NTAHVEYETANRHYAHVDCPGHADYVKNM 92
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9SEF8 |
Definition |
tr|Q9SEF8|Q9SEF8_ORYSA Elongation factor Tu OS=Oryza sativa |
Align length |
88 |
Score (bit) |
132.0 |
E-value |
1.0e-29 |
Report |
 |