DK959881 |
Clone id |
TST39A01NGRL0005_O08 |
Library |
TST39 |
Length |
667 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_O08. 5' end sequence. |
Accession |
DK959881 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL898Contig1 |
Sequence |
AGAAGATGAGGTGCTGGAGCCCTAGCATGTCCTTGAGGGTTTCCAAATCCTCCGAGGGTT TCTCTTTGCTGCTACGCAGGCGAGCTTACTCCCACCCAGTGAACGCCATGGCTGCTTCCA CCCACACACATCCCTTGCTACCCGTGCGTTCGGAGAGTATGCAGAGCAGCAGACCCCTCA TTTGCAGAGCCTCTCTTTCAAGCCTCTCCTTTGCAGGTAAGCCTCTCTGCATCGAGGCGA GGCCTCCTTGTACCTCTTCCAGATTCGTCAGCTTCATCTCTGTTGGTCCCGGTCTGGGTA CGCGGCGTTGCAATTCGTGCGCTCTTGACCCTGATTACTACAGAGTGCAGAAGGAGGAGG GCATTCCAGTCGGTGTGAGGCTCAAGATATGGAACCTGCCTCCTGACTTCAAAGAGGAAG ACAAAGAGGACTTTAAGGCATGGTTTGGTCCTCCTGATGTAGTCAATCCGGTGGTTGTAG ATAAGATAGAGATTACAGAGGACCCTTTCTGGGTTGACCAAAACATCAGGGCTTTTGTGG ACTTTGAAAGCATTGATTATGCCTGCATGGCCATAGTTAAGTATGACGGATCTCGATACA GAGGTCGCTGTGTCCGAATGGATTTTGTGCAGAAGCGCCCTCATGAGAAAGAGTATGGTG GGCCGCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6AWC2 |
Definition |
sp|Q6AWC2|WWC2_HUMAN Protein WWC2 OS=Homo sapiens |
Align length |
56 |
Score (bit) |
36.6 |
E-value |
0.12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959881|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_O08, 5' (667 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6AWC2|WWC2_HUMAN Protein WWC2 OS=Homo sapiens GN=WWC2 PE=1 SV=2 37 0.12 sp|P62997|TRA2B_RAT Splicing factor, arginine/serine-rich 10 OS=... 33 1.4 sp|P62996|TRA2B_MOUSE Splicing factor, arginine/serine-rich 10 O... 33 1.4 sp|P62995|TRA2B_HUMAN Splicing factor, arginine/serine-rich 10 O... 33 1.4 sp|Q3ZBT6|TRA2B_BOVIN Splicing factor, arginine/serine-rich 10 O... 33 1.4 sp|Q6NXJ0|WWC2_MOUSE Protein WWC2 OS=Mus musculus GN=Wwc2 PE=2 SV=1 33 1.8 sp|Q8R7B8|ARGC_THETN N-acetyl-gamma-glutamyl-phosphate reductase... 32 2.3 sp|Q2M2D7|TBC28_HUMAN TBC1 domain family member 28 OS=Homo sapie... 31 5.2 sp|Q7SXP4|SF1L1_DANRE Splicing factor, arginine/serine-rich 1-li... 31 6.7 sp|Q6NYA0|SFRS1_DANRE Splicing factor, arginine/serine-rich 1 OS... 30 8.8 sp|Q24491|RX21_DROME RNA-binding protein Rsf1 OS=Drosophila mela... 30 8.8 sp|Q4V9H5|P20LX_RAT Tudor domain-containing protein PHF20L1 OS=R... 30 8.8 sp|Q64896|HBEAG_ASHV External core antigen OS=Artic squirrel hep... 30 8.8 sp|Q64897|CAPSD_ASHV Capsid protein OS=Artic squirrel hepatitis ... 30 8.8 sp|Q60688|FOXD4_MOUSE Forkhead box protein D4 OS=Mus musculus GN... 30 8.9
>sp|Q6AWC2|WWC2_HUMAN Protein WWC2 OS=Homo sapiens GN=WWC2 PE=1 SV=2 Length = 1192
Score = 36.6 bits (83), Expect = 0.12 Identities = 25/56 (44%), Positives = 32/56 (57%) Frame = +3
Query: 105 AMAASTHTHPLLPVRSESMQSSRPLICRASLSSLSFAGKPLCIEARPPCTSSRFVS 272 A AA+ HT PL +E+ +S L R+SLSSLS G PL +E P +SS S Sbjct: 526 AAAATGHTPPL----AEAPKSVASLSSRSSLSSLSPPGSPLVLEGTFPMSSSHDAS 577
>sp|P62997|TRA2B_RAT Splicing factor, arginine/serine-rich 10 OS=Rattus norvegicus GN=Sfrs10 PE=1 SV=1 Length = 288
Score = 33.1 bits (74), Expect = 1.4 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +3
Query: 531 AFVDFESIDYACMAIVKYDGSRYRGRCVRMDF-VQKRPH 644 AFV FE++D A A + +G GR +R+DF + KRPH Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200
>sp|P62996|TRA2B_MOUSE Splicing factor, arginine/serine-rich 10 OS=Mus musculus GN=Sfrs10 PE=1 SV=1 Length = 288
Score = 33.1 bits (74), Expect = 1.4 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +3
Query: 531 AFVDFESIDYACMAIVKYDGSRYRGRCVRMDF-VQKRPH 644 AFV FE++D A A + +G GR +R+DF + KRPH Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200
>sp|P62995|TRA2B_HUMAN Splicing factor, arginine/serine-rich 10 OS=Homo sapiens GN=SFRS10 PE=1 SV=1 Length = 288
Score = 33.1 bits (74), Expect = 1.4 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +3
Query: 531 AFVDFESIDYACMAIVKYDGSRYRGRCVRMDF-VQKRPH 644 AFV FE++D A A + +G GR +R+DF + KRPH Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200
>sp|Q3ZBT6|TRA2B_BOVIN Splicing factor, arginine/serine-rich 10 OS=Bos taurus GN=SFRS10 PE=2 SV=1 Length = 288
Score = 33.1 bits (74), Expect = 1.4 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +3
Query: 531 AFVDFESIDYACMAIVKYDGSRYRGRCVRMDF-VQKRPH 644 AFV FE++D A A + +G GR +R+DF + KRPH Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200
>sp|Q6NXJ0|WWC2_MOUSE Protein WWC2 OS=Mus musculus GN=Wwc2 PE=2 SV=1 Length = 1187
Score = 32.7 bits (73), Expect = 1.8 Identities = 21/50 (42%), Positives = 31/50 (62%) Frame = +3
Query: 108 MAASTHTHPLLPVRSESMQSSRPLICRASLSSLSFAGKPLCIEARPPCTS 257 + AS+HT PL +E+ +S L R+SLSSLS G PL +++ P +S Sbjct: 527 VTASSHTTPL----TEASKSVASLSSRSSLSSLSPPGSPLVLDSVFPGSS 572
>sp|Q8R7B8|ARGC_THETN N-acetyl-gamma-glutamyl-phosphate reductase OS=Thermoanaerobacter tengcongensis GN=argC PE=3 SV=1 Length = 344
Score = 32.3 bits (72), Expect = 2.3 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Frame = +3
Query: 195 LSSLSFAGKPLCIEARPPCTSSRFVSFISVGPGLGTRRCNSC--ALDPDYYRVQKEEGIP 368 +SS S+AGK + + P T +S V +C+ AL Y E + Sbjct: 32 ISSQSYAGKSIA-DVYPSLTGFYDISLDDVEVEKAVSKCDVVFTALPAGYASKIAREAVK 90
Query: 369 VGVRLKIWNLPPDFKEEDKEDFKAWFG 449 GV K+ +L DF+ +D +K W+G Sbjct: 91 KGV--KVIDLGADFRFDDYSTYKEWYG 115
>sp|Q2M2D7|TBC28_HUMAN TBC1 domain family member 28 OS=Homo sapiens GN=TBC1D28 PE=2 SV=1 Length = 210
Score = 31.2 bits (69), Expect = 5.2 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 5/48 (10%) Frame = -2
Query: 219 YLQRRGLKER-LCK*GVCCSAYSP----NARVARDVCGWKQPWRSLGG 91 ++QR G+K++ LC V SAY+P R + +C + Q W SLGG Sbjct: 159 FIQRFGVKQQELCDILVAYSAYNPVSIPGQRYSWYLCPYSQAWVSLGG 206
>sp|Q7SXP4|SF1L1_DANRE Splicing factor, arginine/serine-rich 1-like protein 1 OS=Danio rerio GN=sfrs1l PE=2 SV=1 Length = 245
Score = 30.8 bits (68), Expect = 6.7 Identities = 26/83 (31%), Positives = 36/83 (43%) Frame = +3
Query: 378 RLKIWNLPPDFKEEDKEDFKAWFGXXXXXXXXXXXKIEITEDPFWVDQNIRAFVDFESID 557 R+ + NLPPD + +D ED +G K PF AFV+FE Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYG----AIRDIDLKNRRGGPPF-------AFVEFEDPR 64
Query: 558 YACMAIVKYDGSRYRGRCVRMDF 626 A A+ DG Y G +R++F Sbjct: 65 DAEDAVYARDGYDYDGYRLRVEF 87
>sp|Q6NYA0|SFRS1_DANRE Splicing factor, arginine/serine-rich 1 OS=Danio rerio GN=sfrs1 PE=2 SV=1 Length = 245
Score = 30.4 bits (67), Expect = 8.8 Identities = 26/83 (31%), Positives = 36/83 (43%) Frame = +3
Query: 378 RLKIWNLPPDFKEEDKEDFKAWFGXXXXXXXXXXXKIEITEDPFWVDQNIRAFVDFESID 557 R+ + NLPPD + +D ED +G K PF AFV+FE Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYG----AIRDIDLKNRRGGPPF-------AFVEFEDPR 64
Query: 558 YACMAIVKYDGSRYRGRCVRMDF 626 A A+ DG Y G +R++F Sbjct: 65 DAEDAVYGRDGYDYDGYRLRVEF 87
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9DPH0 |
Definition |
tr|Q9DPH0|Q9DPH0_9REOV Sigma A OS=Avian orthoreovirus |
Align length |
121 |
Score (bit) |
38.5 |
E-value |
0.38 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959881|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_O08, 5' (667 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9DPH0|Q9DPH0_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 39 0.38 tr|A7Q1D9|A7Q1D9_VITVI Chromosome chr10 scaffold_43, whole genom... 38 0.49 tr|A5C738|A5C738_VITVI Putative uncharacterized protein OS=Vitis... 38 0.49 tr|Q9DPG6|Q9DPG6_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 37 1.4 tr|Q9DL59|Q9DL59_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 37 1.4 tr|B4FSB9|B4FSB9_MAIZE Putative uncharacterized protein OS=Zea m... 37 1.4 tr|A4RKF2|A4RKF2_MAGGR Putative uncharacterized protein OS=Magna... 35 3.2 tr|Q9DPH2|Q9DPH2_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 35 4.2 tr|B3L7P7|B3L7P7_PLAKH RNA binding protein, putative OS=Plasmodi... 35 4.2 tr|B8MIQ4|B8MIQ4_9EURO Ribonucleoprotein, putative OS=Talaromyce... 35 4.2 tr|B6KFL4|B6KFL4_TOXGO DNA polymerase, putative OS=Toxoplasma go... 35 5.5 tr|A7F8J3|A7F8J3_SCLS1 Putative uncharacterized protein OS=Scler... 34 7.1 tr|A7F2V8|A7F2V8_SCLS1 Putative uncharacterized protein OS=Scler... 34 7.1 tr|Q7R7P1|Q7R7P1_PLAYO Putative uncharacterized protein PY07541 ... 34 9.3 tr|Q5KP11|Q5KP11_CRYNE Single-stranded DNA binding protein, puta... 34 9.3 tr|Q5AYA8|Q5AYA8_EMENI Putative uncharacterized protein OS=Emeri... 34 9.3 tr|Q55ZP9|Q55ZP9_CRYNE Putative uncharacterized protein OS=Crypt... 34 9.3 tr|B6QK21|B6QK21_PENMA Ribonucleoprotein, putative OS=Penicilliu... 34 9.3
>tr|Q9DPH0|Q9DPH0_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 Length = 416
Score = 38.5 bits (88), Expect = 0.38 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 14/121 (11%) Frame = +3
Query: 15 WSPSMSLRVSKSSEGFSLLLRRR-----AYSHPVNAMAASTHTHPLLPVRSESMQSSRPL 179 W L +S + EG S L+ + A PV+A + T+P R +QS PL Sbjct: 85 WRTFNVLGLSWTDEGLSGLVAAQDPPPAAPYQPVSAQWSDLLTYPRWANRRRELQSKYPL 144
Query: 180 ICRASLSSLSFAGKPLCIEARPPCTSSRFV---------SFISVGPGLGTRRCNSCALDP 332 + R++L S AG L +E P S R +F+ + L T+ C++ ++P Sbjct: 145 LLRSTLLSAMRAGPVLYVETWPNMISGRLADWFMSQYGNNFVDMCARL-TQSCSNMPVEP 203
Query: 333 D 335 D Sbjct: 204 D 204
>tr|A7Q1D9|A7Q1D9_VITVI Chromosome chr10 scaffold_43, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028417001 PE=4 SV=1 Length = 383
Score = 38.1 bits (87), Expect = 0.49 Identities = 22/59 (37%), Positives = 28/59 (47%) Frame = +3
Query: 489 EITEDPFWVDQNIRAFVDFESIDYACMAIVKYDGSRYRGRCVRMDFVQKRPHEKEYGGP 665 EITE F VD+ +R FV FE + A+V DG + GR V F + K P Sbjct: 316 EITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVHATFYDEDRFSKNELAP 374
>tr|A5C738|A5C738_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023439 PE=4 SV=1 Length = 366
Score = 38.1 bits (87), Expect = 0.49 Identities = 22/59 (37%), Positives = 28/59 (47%) Frame = +3
Query: 489 EITEDPFWVDQNIRAFVDFESIDYACMAIVKYDGSRYRGRCVRMDFVQKRPHEKEYGGP 665 EITE F VD+ +R FV FE + A+V DG + GR V F + K P Sbjct: 299 EITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVHATFYDEDRFSKNELAP 357
>tr|Q9DPG6|Q9DPG6_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 Length = 416
Score = 36.6 bits (83), Expect = 1.4 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 14/121 (11%) Frame = +3
Query: 15 WSPSMSLRVSKSSEGFSLLLRRR-----AYSHPVNAMAASTHTHPLLPVRSESMQSSRPL 179 W L +S + EG S L+ + A PV+A + +P R +QS PL Sbjct: 85 WRTFNVLGLSWTDEGLSGLVAAQDPPPAAPYQPVSAQWSDLLNYPRWANRRRELQSKYPL 144
Query: 180 ICRASLSSLSFAGKPLCIEARPPCTSSRFV---------SFISVGPGLGTRRCNSCALDP 332 + R++L S AG L +E P S R +F+ + L T+ C++ ++P Sbjct: 145 LLRSTLLSAMRAGPVLYVETWPNMISGRLADWFMSQYGNNFVDMCARL-TQSCSNMPVEP 203
Query: 333 D 335 D Sbjct: 204 D 204
>tr|Q9DL59|Q9DL59_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 Length = 416
Score = 36.6 bits (83), Expect = 1.4 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 14/121 (11%) Frame = +3
Query: 15 WSPSMSLRVSKSSEGFSLLLRRR-----AYSHPVNAMAASTHTHPLLPVRSESMQSSRPL 179 W L +S + EG S L+ + A PV+A + +P R +QS PL Sbjct: 85 WRTFNVLGLSWTDEGLSGLVAAQDPPPAAPYQPVSAQWSDLLNYPRWANRRRELQSKYPL 144
Query: 180 ICRASLSSLSFAGKPLCIEARPPCTSSRFV---------SFISVGPGLGTRRCNSCALDP 332 + R++L S AG L +E P S R +F+ + L T+ C++ ++P Sbjct: 145 LLRSTLLSAMRAGPVLYVETWPNMISGRLADWFMSQYGNNFVDMCARL-TQSCSNMPVEP 203
Query: 333 D 335 D Sbjct: 204 D 204
>tr|B4FSB9|B4FSB9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 473
Score = 36.6 bits (83), Expect = 1.4 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +3
Query: 534 FVDFESIDYACMAIVKYDGSRYRGRCVRMDFVQKRPHEKEYGG 662 +V+F S+D A A+ + G+ GR +R+DF RP + GG Sbjct: 376 YVEFSSVDEARQALNELQGTDIGGRAIRLDFSTPRPQGERQGG 418
>tr|A4RKF2|A4RKF2_MAGGR Putative uncharacterized protein OS=Magnaporthe grisea GN=MGG_11192 PE=4 SV=1 Length = 1103
Score = 35.4 bits (80), Expect = 3.2 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Frame = +3
Query: 114 ASTHTHPLLPVRSESMQSSRPLICR----ASLSSLSFAGKPLCIEARPPCTSSRFVSFIS 281 AS T PL P R+ S QS RP++ R A++S+ S G PP S+ S+ S Sbjct: 761 ASPQTQPLQPARTSSRQSQRPVVSREYQSAAISNSSDYG--------PPTMSN---SYSS 809
Query: 282 VGPGLGT 302 VG +GT Sbjct: 810 VGASVGT 816
>tr|Q9DPH2|Q9DPH2_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 Length = 416
Score = 35.0 bits (79), Expect = 4.2 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 14/121 (11%) Frame = +3
Query: 15 WSPSMSLRVSKSSEGFSLLLRRR-----AYSHPVNAMAASTHTHPLLPVRSESMQSSRPL 179 W +S + EG S L+ + A PV+A + +P R +QS PL Sbjct: 85 WRTFNVFGLSWTDEGLSGLVAAQDPPPAAPYQPVSAQWSDLLNYPRWANRRRELQSKYPL 144
Query: 180 ICRASLSSLSFAGKPLCIEARPPCTSSRFV---------SFISVGPGLGTRRCNSCALDP 332 + R++L S AG L +E P S R +F+ + L T+ C++ ++P Sbjct: 145 LLRSTLLSAMRAGPVLYVETWPNMISGRLADWFMSQYGNNFVDMCARL-TQSCSNMPVEP 203
Query: 333 D 335 D Sbjct: 204 D 204
>tr|B3L7P7|B3L7P7_PLAKH RNA binding protein, putative OS=Plasmodium knowlesi (strain H) GN=PKH_113330 PE=4 SV=1 Length = 153
Score = 35.0 bits (79), Expect = 4.2 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3
Query: 543 FESIDYACMAIVKYDGSRYRGRCVRMDFVQKR 638 FE+I+ A AI KYDGS G ++M+ VQ+R Sbjct: 108 FENINDAQKAIDKYDGSEIEGMAIKMEIVQRR 139
>tr|B8MIQ4|B8MIQ4_9EURO Ribonucleoprotein, putative OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_050040 PE=4 SV=1 Length = 325
Score = 35.0 bits (79), Expect = 4.2 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = +3
Query: 357 EGIPVGVRLKIWNLPPDFKEEDKED-FKAWFGXXXXXXXXXXXKIEITEDPFWVDQNIRA 533 + I G RL + N+P K ED E F+A +I+I+ DPF Sbjct: 73 QSITEGRRLYVGNMPYTAKREDVESIFEA--------GEYSIERIDISIDPFTGRNPSYC 124
Query: 534 FVDFESIDYACMAIVKYDGSRYRGRCVRM 620 FV+ + + A A+V+ DG +GR VR+ Sbjct: 125 FVELATKEQADRAMVELDGKDLQGRPVRI 153
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