DK959881
Clone id TST39A01NGRL0005_O08
Library
Length 667
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_O08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
AGAAGATGAGGTGCTGGAGCCCTAGCATGTCCTTGAGGGTTTCCAAATCCTCCGAGGGTT
TCTCTTTGCTGCTACGCAGGCGAGCTTACTCCCACCCAGTGAACGCCATGGCTGCTTCCA
CCCACACACATCCCTTGCTACCCGTGCGTTCGGAGAGTATGCAGAGCAGCAGACCCCTCA
TTTGCAGAGCCTCTCTTTCAAGCCTCTCCTTTGCAGGTAAGCCTCTCTGCATCGAGGCGA
GGCCTCCTTGTACCTCTTCCAGATTCGTCAGCTTCATCTCTGTTGGTCCCGGTCTGGGTA
CGCGGCGTTGCAATTCGTGCGCTCTTGACCCTGATTACTACAGAGTGCAGAAGGAGGAGG
GCATTCCAGTCGGTGTGAGGCTCAAGATATGGAACCTGCCTCCTGACTTCAAAGAGGAAG
ACAAAGAGGACTTTAAGGCATGGTTTGGTCCTCCTGATGTAGTCAATCCGGTGGTTGTAG
ATAAGATAGAGATTACAGAGGACCCTTTCTGGGTTGACCAAAACATCAGGGCTTTTGTGG
ACTTTGAAAGCATTGATTATGCCTGCATGGCCATAGTTAAGTATGACGGATCTCGATACA
GAGGTCGCTGTGTCCGAATGGATTTTGTGCAGAAGCGCCCTCATGAGAAAGAGTATGGTG
GGCCGCG
■■Homology search results ■■ -
sp_hit_id Q6AWC2
Definition sp|Q6AWC2|WWC2_HUMAN Protein WWC2 OS=Homo sapiens
Align length 56
Score (bit) 36.6
E-value 0.12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959881|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_O08, 5'
(667 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6AWC2|WWC2_HUMAN Protein WWC2 OS=Homo sapiens GN=WWC2 PE=1 SV=2 37 0.12
sp|P62997|TRA2B_RAT Splicing factor, arginine/serine-rich 10 OS=... 33 1.4
sp|P62996|TRA2B_MOUSE Splicing factor, arginine/serine-rich 10 O... 33 1.4
sp|P62995|TRA2B_HUMAN Splicing factor, arginine/serine-rich 10 O... 33 1.4
sp|Q3ZBT6|TRA2B_BOVIN Splicing factor, arginine/serine-rich 10 O... 33 1.4
sp|Q6NXJ0|WWC2_MOUSE Protein WWC2 OS=Mus musculus GN=Wwc2 PE=2 SV=1 33 1.8
sp|Q8R7B8|ARGC_THETN N-acetyl-gamma-glutamyl-phosphate reductase... 32 2.3
sp|Q2M2D7|TBC28_HUMAN TBC1 domain family member 28 OS=Homo sapie... 31 5.2
sp|Q7SXP4|SF1L1_DANRE Splicing factor, arginine/serine-rich 1-li... 31 6.7
sp|Q6NYA0|SFRS1_DANRE Splicing factor, arginine/serine-rich 1 OS... 30 8.8
sp|Q24491|RX21_DROME RNA-binding protein Rsf1 OS=Drosophila mela... 30 8.8
sp|Q4V9H5|P20LX_RAT Tudor domain-containing protein PHF20L1 OS=R... 30 8.8
sp|Q64896|HBEAG_ASHV External core antigen OS=Artic squirrel hep... 30 8.8
sp|Q64897|CAPSD_ASHV Capsid protein OS=Artic squirrel hepatitis ... 30 8.8
sp|Q60688|FOXD4_MOUSE Forkhead box protein D4 OS=Mus musculus GN... 30 8.9

>sp|Q6AWC2|WWC2_HUMAN Protein WWC2 OS=Homo sapiens GN=WWC2 PE=1 SV=2
Length = 1192

Score = 36.6 bits (83), Expect = 0.12
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +3

Query: 105 AMAASTHTHPLLPVRSESMQSSRPLICRASLSSLSFAGKPLCIEARPPCTSSRFVS 272
A AA+ HT PL +E+ +S L R+SLSSLS G PL +E P +SS S
Sbjct: 526 AAAATGHTPPL----AEAPKSVASLSSRSSLSSLSPPGSPLVLEGTFPMSSSHDAS 577


>sp|P62997|TRA2B_RAT Splicing factor, arginine/serine-rich 10
OS=Rattus norvegicus GN=Sfrs10 PE=1 SV=1
Length = 288

Score = 33.1 bits (74), Expect = 1.4
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3

Query: 531 AFVDFESIDYACMAIVKYDGSRYRGRCVRMDF-VQKRPH 644
AFV FE++D A A + +G GR +R+DF + KRPH
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200


>sp|P62996|TRA2B_MOUSE Splicing factor, arginine/serine-rich 10
OS=Mus musculus GN=Sfrs10 PE=1 SV=1
Length = 288

Score = 33.1 bits (74), Expect = 1.4
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3

Query: 531 AFVDFESIDYACMAIVKYDGSRYRGRCVRMDF-VQKRPH 644
AFV FE++D A A + +G GR +R+DF + KRPH
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200


>sp|P62995|TRA2B_HUMAN Splicing factor, arginine/serine-rich 10
OS=Homo sapiens GN=SFRS10 PE=1 SV=1
Length = 288

Score = 33.1 bits (74), Expect = 1.4
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3

Query: 531 AFVDFESIDYACMAIVKYDGSRYRGRCVRMDF-VQKRPH 644
AFV FE++D A A + +G GR +R+DF + KRPH
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200


>sp|Q3ZBT6|TRA2B_BOVIN Splicing factor, arginine/serine-rich 10
OS=Bos taurus GN=SFRS10 PE=2 SV=1
Length = 288

Score = 33.1 bits (74), Expect = 1.4
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3

Query: 531 AFVDFESIDYACMAIVKYDGSRYRGRCVRMDF-VQKRPH 644
AFV FE++D A A + +G GR +R+DF + KRPH
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200


>sp|Q6NXJ0|WWC2_MOUSE Protein WWC2 OS=Mus musculus GN=Wwc2 PE=2 SV=1
Length = 1187

Score = 32.7 bits (73), Expect = 1.8
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +3

Query: 108 MAASTHTHPLLPVRSESMQSSRPLICRASLSSLSFAGKPLCIEARPPCTS 257
+ AS+HT PL +E+ +S L R+SLSSLS G PL +++ P +S
Sbjct: 527 VTASSHTTPL----TEASKSVASLSSRSSLSSLSPPGSPLVLDSVFPGSS 572


>sp|Q8R7B8|ARGC_THETN N-acetyl-gamma-glutamyl-phosphate reductase
OS=Thermoanaerobacter tengcongensis GN=argC PE=3 SV=1
Length = 344

Score = 32.3 bits (72), Expect = 2.3
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3

Query: 195 LSSLSFAGKPLCIEARPPCTSSRFVSFISVGPGLGTRRCNSC--ALDPDYYRVQKEEGIP 368
+SS S+AGK + + P T +S V +C+ AL Y E +
Sbjct: 32 ISSQSYAGKSIA-DVYPSLTGFYDISLDDVEVEKAVSKCDVVFTALPAGYASKIAREAVK 90

Query: 369 VGVRLKIWNLPPDFKEEDKEDFKAWFG 449
GV K+ +L DF+ +D +K W+G
Sbjct: 91 KGV--KVIDLGADFRFDDYSTYKEWYG 115


>sp|Q2M2D7|TBC28_HUMAN TBC1 domain family member 28 OS=Homo sapiens
GN=TBC1D28 PE=2 SV=1
Length = 210

Score = 31.2 bits (69), Expect = 5.2
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = -2

Query: 219 YLQRRGLKER-LCK*GVCCSAYSP----NARVARDVCGWKQPWRSLGG 91
++QR G+K++ LC V SAY+P R + +C + Q W SLGG
Sbjct: 159 FIQRFGVKQQELCDILVAYSAYNPVSIPGQRYSWYLCPYSQAWVSLGG 206


>sp|Q7SXP4|SF1L1_DANRE Splicing factor, arginine/serine-rich 1-like
protein 1 OS=Danio rerio GN=sfrs1l PE=2 SV=1
Length = 245

Score = 30.8 bits (68), Expect = 6.7
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = +3

Query: 378 RLKIWNLPPDFKEEDKEDFKAWFGXXXXXXXXXXXKIEITEDPFWVDQNIRAFVDFESID 557
R+ + NLPPD + +D ED +G K PF AFV+FE
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYG----AIRDIDLKNRRGGPPF-------AFVEFEDPR 64

Query: 558 YACMAIVKYDGSRYRGRCVRMDF 626
A A+ DG Y G +R++F
Sbjct: 65 DAEDAVYARDGYDYDGYRLRVEF 87


>sp|Q6NYA0|SFRS1_DANRE Splicing factor, arginine/serine-rich 1
OS=Danio rerio GN=sfrs1 PE=2 SV=1
Length = 245

Score = 30.4 bits (67), Expect = 8.8
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = +3

Query: 378 RLKIWNLPPDFKEEDKEDFKAWFGXXXXXXXXXXXKIEITEDPFWVDQNIRAFVDFESID 557
R+ + NLPPD + +D ED +G K PF AFV+FE
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYG----AIRDIDLKNRRGGPPF-------AFVEFEDPR 64

Query: 558 YACMAIVKYDGSRYRGRCVRMDF 626
A A+ DG Y G +R++F
Sbjct: 65 DAEDAVYGRDGYDYDGYRLRVEF 87


tr_hit_id Q9DPH0
Definition tr|Q9DPH0|Q9DPH0_9REOV Sigma A OS=Avian orthoreovirus
Align length 121
Score (bit) 38.5
E-value 0.38
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959881|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_O08, 5'
(667 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9DPH0|Q9DPH0_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 39 0.38
tr|A7Q1D9|A7Q1D9_VITVI Chromosome chr10 scaffold_43, whole genom... 38 0.49
tr|A5C738|A5C738_VITVI Putative uncharacterized protein OS=Vitis... 38 0.49
tr|Q9DPG6|Q9DPG6_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 37 1.4
tr|Q9DL59|Q9DL59_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 37 1.4
tr|B4FSB9|B4FSB9_MAIZE Putative uncharacterized protein OS=Zea m... 37 1.4
tr|A4RKF2|A4RKF2_MAGGR Putative uncharacterized protein OS=Magna... 35 3.2
tr|Q9DPH2|Q9DPH2_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1 35 4.2
tr|B3L7P7|B3L7P7_PLAKH RNA binding protein, putative OS=Plasmodi... 35 4.2
tr|B8MIQ4|B8MIQ4_9EURO Ribonucleoprotein, putative OS=Talaromyce... 35 4.2
tr|B6KFL4|B6KFL4_TOXGO DNA polymerase, putative OS=Toxoplasma go... 35 5.5
tr|A7F8J3|A7F8J3_SCLS1 Putative uncharacterized protein OS=Scler... 34 7.1
tr|A7F2V8|A7F2V8_SCLS1 Putative uncharacterized protein OS=Scler... 34 7.1
tr|Q7R7P1|Q7R7P1_PLAYO Putative uncharacterized protein PY07541 ... 34 9.3
tr|Q5KP11|Q5KP11_CRYNE Single-stranded DNA binding protein, puta... 34 9.3
tr|Q5AYA8|Q5AYA8_EMENI Putative uncharacterized protein OS=Emeri... 34 9.3
tr|Q55ZP9|Q55ZP9_CRYNE Putative uncharacterized protein OS=Crypt... 34 9.3
tr|B6QK21|B6QK21_PENMA Ribonucleoprotein, putative OS=Penicilliu... 34 9.3

>tr|Q9DPH0|Q9DPH0_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1
Length = 416

Score = 38.5 bits (88), Expect = 0.38
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Frame = +3

Query: 15 WSPSMSLRVSKSSEGFSLLLRRR-----AYSHPVNAMAASTHTHPLLPVRSESMQSSRPL 179
W L +S + EG S L+ + A PV+A + T+P R +QS PL
Sbjct: 85 WRTFNVLGLSWTDEGLSGLVAAQDPPPAAPYQPVSAQWSDLLTYPRWANRRRELQSKYPL 144

Query: 180 ICRASLSSLSFAGKPLCIEARPPCTSSRFV---------SFISVGPGLGTRRCNSCALDP 332
+ R++L S AG L +E P S R +F+ + L T+ C++ ++P
Sbjct: 145 LLRSTLLSAMRAGPVLYVETWPNMISGRLADWFMSQYGNNFVDMCARL-TQSCSNMPVEP 203

Query: 333 D 335
D
Sbjct: 204 D 204


>tr|A7Q1D9|A7Q1D9_VITVI Chromosome chr10 scaffold_43, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00028417001
PE=4 SV=1
Length = 383

Score = 38.1 bits (87), Expect = 0.49
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +3

Query: 489 EITEDPFWVDQNIRAFVDFESIDYACMAIVKYDGSRYRGRCVRMDFVQKRPHEKEYGGP 665
EITE F VD+ +R FV FE + A+V DG + GR V F + K P
Sbjct: 316 EITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVHATFYDEDRFSKNELAP 374


>tr|A5C738|A5C738_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_023439 PE=4 SV=1
Length = 366

Score = 38.1 bits (87), Expect = 0.49
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +3

Query: 489 EITEDPFWVDQNIRAFVDFESIDYACMAIVKYDGSRYRGRCVRMDFVQKRPHEKEYGGP 665
EITE F VD+ +R FV FE + A+V DG + GR V F + K P
Sbjct: 299 EITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVHATFYDEDRFSKNELAP 357


>tr|Q9DPG6|Q9DPG6_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1
Length = 416

Score = 36.6 bits (83), Expect = 1.4
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Frame = +3

Query: 15 WSPSMSLRVSKSSEGFSLLLRRR-----AYSHPVNAMAASTHTHPLLPVRSESMQSSRPL 179
W L +S + EG S L+ + A PV+A + +P R +QS PL
Sbjct: 85 WRTFNVLGLSWTDEGLSGLVAAQDPPPAAPYQPVSAQWSDLLNYPRWANRRRELQSKYPL 144

Query: 180 ICRASLSSLSFAGKPLCIEARPPCTSSRFV---------SFISVGPGLGTRRCNSCALDP 332
+ R++L S AG L +E P S R +F+ + L T+ C++ ++P
Sbjct: 145 LLRSTLLSAMRAGPVLYVETWPNMISGRLADWFMSQYGNNFVDMCARL-TQSCSNMPVEP 203

Query: 333 D 335
D
Sbjct: 204 D 204


>tr|Q9DL59|Q9DL59_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1
Length = 416

Score = 36.6 bits (83), Expect = 1.4
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Frame = +3

Query: 15 WSPSMSLRVSKSSEGFSLLLRRR-----AYSHPVNAMAASTHTHPLLPVRSESMQSSRPL 179
W L +S + EG S L+ + A PV+A + +P R +QS PL
Sbjct: 85 WRTFNVLGLSWTDEGLSGLVAAQDPPPAAPYQPVSAQWSDLLNYPRWANRRRELQSKYPL 144

Query: 180 ICRASLSSLSFAGKPLCIEARPPCTSSRFV---------SFISVGPGLGTRRCNSCALDP 332
+ R++L S AG L +E P S R +F+ + L T+ C++ ++P
Sbjct: 145 LLRSTLLSAMRAGPVLYVETWPNMISGRLADWFMSQYGNNFVDMCARL-TQSCSNMPVEP 203

Query: 333 D 335
D
Sbjct: 204 D 204


>tr|B4FSB9|B4FSB9_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 473

Score = 36.6 bits (83), Expect = 1.4
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3

Query: 534 FVDFESIDYACMAIVKYDGSRYRGRCVRMDFVQKRPHEKEYGG 662
+V+F S+D A A+ + G+ GR +R+DF RP + GG
Sbjct: 376 YVEFSSVDEARQALNELQGTDIGGRAIRLDFSTPRPQGERQGG 418


>tr|A4RKF2|A4RKF2_MAGGR Putative uncharacterized protein
OS=Magnaporthe grisea GN=MGG_11192 PE=4 SV=1
Length = 1103

Score = 35.4 bits (80), Expect = 3.2
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +3

Query: 114 ASTHTHPLLPVRSESMQSSRPLICR----ASLSSLSFAGKPLCIEARPPCTSSRFVSFIS 281
AS T PL P R+ S QS RP++ R A++S+ S G PP S+ S+ S
Sbjct: 761 ASPQTQPLQPARTSSRQSQRPVVSREYQSAAISNSSDYG--------PPTMSN---SYSS 809

Query: 282 VGPGLGT 302
VG +GT
Sbjct: 810 VGASVGT 816


>tr|Q9DPH2|Q9DPH2_9REOV Sigma A OS=Avian orthoreovirus PE=2 SV=1
Length = 416

Score = 35.0 bits (79), Expect = 4.2
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Frame = +3

Query: 15 WSPSMSLRVSKSSEGFSLLLRRR-----AYSHPVNAMAASTHTHPLLPVRSESMQSSRPL 179
W +S + EG S L+ + A PV+A + +P R +QS PL
Sbjct: 85 WRTFNVFGLSWTDEGLSGLVAAQDPPPAAPYQPVSAQWSDLLNYPRWANRRRELQSKYPL 144

Query: 180 ICRASLSSLSFAGKPLCIEARPPCTSSRFV---------SFISVGPGLGTRRCNSCALDP 332
+ R++L S AG L +E P S R +F+ + L T+ C++ ++P
Sbjct: 145 LLRSTLLSAMRAGPVLYVETWPNMISGRLADWFMSQYGNNFVDMCARL-TQSCSNMPVEP 203

Query: 333 D 335
D
Sbjct: 204 D 204


>tr|B3L7P7|B3L7P7_PLAKH RNA binding protein, putative OS=Plasmodium
knowlesi (strain H) GN=PKH_113330 PE=4 SV=1
Length = 153

Score = 35.0 bits (79), Expect = 4.2
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3

Query: 543 FESIDYACMAIVKYDGSRYRGRCVRMDFVQKR 638
FE+I+ A AI KYDGS G ++M+ VQ+R
Sbjct: 108 FENINDAQKAIDKYDGSEIEGMAIKMEIVQRR 139


>tr|B8MIQ4|B8MIQ4_9EURO Ribonucleoprotein, putative OS=Talaromyces
stipitatus ATCC 10500 GN=TSTA_050040 PE=4 SV=1
Length = 325

Score = 35.0 bits (79), Expect = 4.2
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +3

Query: 357 EGIPVGVRLKIWNLPPDFKEEDKED-FKAWFGXXXXXXXXXXXKIEITEDPFWVDQNIRA 533
+ I G RL + N+P K ED E F+A +I+I+ DPF
Sbjct: 73 QSITEGRRLYVGNMPYTAKREDVESIFEA--------GEYSIERIDISIDPFTGRNPSYC 124

Query: 534 FVDFESIDYACMAIVKYDGSRYRGRCVRM 620
FV+ + + A A+V+ DG +GR VR+
Sbjct: 125 FVELATKEQADRAMVELDGKDLQGRPVRI 153