DK959884 |
Clone id |
TST39A01NGRL0005_O11 |
Library |
TST39 |
Length |
576 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_O11. 5' end sequence. |
Accession |
DK959884 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1650Contig1 |
Sequence |
CACATACGTACATCCACTGTCGAAGGTCCGCACGCAGACAAAGCTGTGCCTCTCCTACAC CTTCTTCCTGTCGCCAGGATGAACTTCGACGGTGGTGTGGACGCTAACTCGCGGCAGCAG CTGGGTAACTTTGCCATCGCCACTTCACCTCCTGCGAGCATCAAACAGCCCAAGACCGTC TCGAATCCTGTCGATACTCACTCCGTTTCTAGAAGATTGCAATCGGAGCTAATGGTTTTG ATGACTCGTGGAGACCCTGGGGTTTCTGCCTTTCCAGAAGGGGATAATATCTTTTCGTGG ATAGGAACTATCAAGGGCAGTGCAGGGACAGTATACGAAACTTTGTCTTTCAAATTATCC CTGAAGTTTCCCACGGACTATCCTTTCAAGCCGCCCACTGTCAAGTTTGATCCTCCTTGT TTTCATCCTAATGTGGATCAATATGGCAATATATGCCTTGATATTTTGCAGGACAAGTGG TCTTCAGCTTATGATGTCAGAACGATTTTACTTTCCATCCAAAGCCTTCTTGGAGAGCCC AACAATGATAGCCCACTGAATAGCTATGCTGCAGCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q54XS6 |
Definition |
sp|Q54XS6|UBE2C_DICDI Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum |
Align length |
126 |
Score (bit) |
206.0 |
E-value |
7.0e-53 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T770 |
Definition |
tr|A9T770|A9T770_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
157 |
Score (bit) |
251.0 |
E-value |
3.0e-65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959884|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_O11, 5' (576 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T770|A9T770_PHYPA Predicted protein OS=Physcomitrella paten... 251 3e-65 tr|A5AE59|A5AE59_VITVI Ubiquitin carrier protein OS=Vitis vinife... 215 2e-54 tr|Q9LIY1|Q9LIY1_ORYSJ Ubiquitin carrier protein OS=Oryza sativa... 213 6e-54 tr|B6TP88|B6TP88_MAIZE Ubiquitin-conjugating enzyme X OS=Zea may... 213 6e-54 tr|B6SR07|B6SR07_MAIZE Ubiquitin-conjugating enzyme X OS=Zea may... 213 6e-54 tr|B4FCG1|B4FCG1_MAIZE Putative uncharacterized protein OS=Zea m... 212 1e-53 tr|A5BHQ5|A5BHQ5_VITVI Ubiquitin carrier protein OS=Vitis vinife... 210 5e-53 tr|B6TEH3|B6TEH3_MAIZE Ubiquitin-conjugating enzyme X OS=Zea may... 209 7e-53 tr|A9PD53|A9PD53_POPTR Ubiquitin carrier protein OS=Populus tric... 208 2e-52 tr|A9PAG1|A9PAG1_POPTR Ubiquitin carrier protein OS=Populus tric... 204 4e-51 tr|B6NJK8|B6NJK8_BRAFL Putative uncharacterized protein OS=Branc... 200 5e-50 tr|A4RZK1|A4RZK1_OSTLU Ubiquitin carrier protein (Fragment) OS=O... 199 9e-50 tr|A0PJP2|A0PJP2_XENTR Ubiquitin carrier protein OS=Xenopus trop... 199 1e-49 tr|A2WNC8|A2WNC8_ORYSI Ubiquitin carrier protein OS=Oryza sativa... 196 8e-49 tr|A2A4Z1|A2A4Z1_MOUSE Ubiquitin carrier protein OS=Mus musculus... 196 1e-48 tr|A2A4Z0|A2A4Z0_MOUSE Ubiquitin carrier protein OS=Mus musculus... 196 1e-48 tr|Q3UWQ1|Q3UWQ1_MOUSE Ubiquitin carrier protein OS=Mus musculus... 195 2e-48 tr|Q5I005|Q5I005_XENLA Ubiquitin carrier protein OS=Xenopus laev... 194 2e-48 tr|B7FMR9|B7FMR9_MEDTR Putative uncharacterized protein OS=Medic... 193 5e-48 tr|Q5TZN3|Q5TZN3_HUMAN Ubiquitin carrier protein OS=Homo sapiens... 191 3e-47 tr|Q3B745|Q3B745_DANRE Ubiquitin carrier protein OS=Danio rerio ... 189 9e-47 tr|Q9PVW3|Q9PVW3_CARAU Ubiquitin carrier protein OS=Carassius au... 188 2e-46 tr|B2R4U3|B2R4U3_HUMAN cDNA, FLJ92217, highly similar to Homo sa... 188 2e-46 tr|Q174Z9|Q174Z9_AEDAE Ubiquitin carrier protein OS=Aedes aegypt... 184 3e-45 tr|B5XE03|B5XE03_SALSA Ubiquitin-conjugating enzyme E2 C OS=Salm... 184 4e-45 tr|B5X5V5|B5X5V5_SALSA Ubiquitin-conjugating enzyme E2 C OS=Salm... 184 4e-45 tr|B5XFH6|B5XFH6_SALSA Ubiquitin-conjugating enzyme E2 C OS=Salm... 183 7e-45 tr|B3RV97|B3RV97_TRIAD Putative uncharacterized protein OS=Trich... 183 7e-45 tr|B0WXE8|B0WXE8_CULQU Ubiquitin carrier protein OS=Culex quinqu... 181 3e-44 tr|B4LGQ0|B4LGQ0_DROVI GJ11488 OS=Drosophila virilis GN=GJ11488 ... 179 8e-44
>tr|A9T770|A9T770_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_110248 PE=3 SV=1 Length = 184
Score = 251 bits (640), Expect = 3e-65 Identities = 123/157 (78%), Positives = 133/157 (84%) Frame = +1
Query: 106 NSRQQLGNFAIATSPPASIKQPKTVSNPVDTHSVSRRLQSELMVLMTRGDPGVSAFPEGD 285 N Q + + + PA+ K PK S VD+HSVSRRLQSELM LM GDPG+SAFPEGD Sbjct: 4 NLPQDVQQHSSSIVQPAAGKLPKPASQLVDSHSVSRRLQSELMSLMMSGDPGISAFPEGD 63
Query: 286 NIFSWIGTIKGSAGTVYETLSFKLSLKFPTDYPFKPPTVKFDPPCFHPNVDQYGNICLDI 465 NIFSWIGTIKGS GTVYE LS+KL+LKFPTDYPFKPP VKFD CFHPNVDQ+GNICLDI Sbjct: 64 NIFSWIGTIKGSNGTVYEGLSYKLTLKFPTDYPFKPPVVKFDTLCFHPNVDQFGNICLDI 123
Query: 466 LQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNSYAAA 576 LQDKWSSAYDVRT+LLSIQSLLGEPNNDSPLNSYAAA Sbjct: 124 LQDKWSSAYDVRTVLLSIQSLLGEPNNDSPLNSYAAA 160
>tr|A5AE59|A5AE59_VITVI Ubiquitin carrier protein OS=Vitis vinifera GN=GSVIVT00018215001 PE=3 SV=1 Length = 190
Score = 215 bits (547), Expect = 2e-54 Identities = 105/142 (73%), Positives = 119/142 (83%), Gaps = 1/142 (0%) Frame = +1
Query: 154 ASIKQPKTVSNPVDTHSVSRRLQSELMVLM-TRGDPGVSAFPEGDNIFSWIGTIKGSAGT 330 A KQ K NPVDT SVS+RLQ ELM LM + GD GVSAFPE ++IF+WIGTI G GT Sbjct: 25 APSKQLKAAPNPVDTSSVSQRLQKELMALMMSGGDLGVSAFPESESIFTWIGTIMGGNGT 84
Query: 331 VYETLSFKLSLKFPTDYPFKPPTVKFDPPCFHPNVDQYGNICLDILQDKWSSAYDVRTIL 510 VYE LS+KLSL+FP DYPFKPP VKF+ CFHPN+DQ+GNICLDILQDKWSSAYD +T+L Sbjct: 85 VYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNIDQFGNICLDILQDKWSSAYDCKTVL 144
Query: 511 LSIQSLLGEPNNDSPLNSYAAA 576 LSIQSLLGEPN +SPLNSYAA+ Sbjct: 145 LSIQSLLGEPNIESPLNSYAAS 166
>tr|Q9LIY1|Q9LIY1_ORYSJ Ubiquitin carrier protein OS=Oryza sativa subsp. japonica GN=P0693B08.33 PE=2 SV=1 Length = 191
Score = 213 bits (542), Expect = 6e-54 Identities = 101/125 (80%), Positives = 110/125 (88%) Frame = +1
Query: 202 SVSRRLQSELMVLMTRGDPGVSAFPEGDNIFSWIGTIKGSAGTVYETLSFKLSLKFPTDY 381 SV RRLQSELM LM GDPGVSAFPEGDNIFSW+GTI GSA T YE S++LSL FP +Y Sbjct: 47 SVVRRLQSELMALMMGGDPGVSAFPEGDNIFSWVGTIAGSAATAYEGTSYRLSLAFPGEY 106
Query: 382 PFKPPTVKFDPPCFHPNVDQYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLN 561 P+KPP V+F+ PCFHPNVD +GNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLN Sbjct: 107 PYKPPKVRFETPCFHPNVDAHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLN 166
Query: 562 SYAAA 576 + AAA Sbjct: 167 TQAAA 171
>tr|B6TP88|B6TP88_MAIZE Ubiquitin-conjugating enzyme X OS=Zea mays PE=2 SV=1 Length = 183
Score = 213 bits (542), Expect = 6e-54 Identities = 108/161 (67%), Positives = 121/161 (75%), Gaps = 4/161 (2%) Frame = +1
Query: 106 NSRQQLGNFAIATSPPASIKQPKTVS----NPVDTHSVSRRLQSELMVLMTRGDPGVSAF 273 N Q GN A+ A+ PK S + SV RRLQSELM LM GDPGVSAF Sbjct: 6 NQESQTGNVPAAS---AATPGPKPASAGAGKGAEGQSVVRRLQSELMALMMGGDPGVSAF 62
Query: 274 PEGDNIFSWIGTIKGSAGTVYETLSFKLSLKFPTDYPFKPPTVKFDPPCFHPNVDQYGNI 453 PEGDN+ W+GTI GSAGT YE S++L+L F T+YP+KPP V+FD PCFHPNVD +GNI Sbjct: 63 PEGDNMLHWVGTIDGSAGTAYEGTSYRLALAFTTEYPYKPPKVRFDTPCFHPNVDVHGNI 122
Query: 454 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNSYAAA 576 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLN+ AAA Sbjct: 123 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAA 163
>tr|B6SR07|B6SR07_MAIZE Ubiquitin-conjugating enzyme X OS=Zea mays PE=2 SV=1 Length = 183
Score = 213 bits (542), Expect = 6e-54 Identities = 108/161 (67%), Positives = 121/161 (75%), Gaps = 4/161 (2%) Frame = +1
Query: 106 NSRQQLGNFAIATSPPASIKQPKTVS----NPVDTHSVSRRLQSELMVLMTRGDPGVSAF 273 N Q GN A+ A+ PK S + SV RRLQSELM LM GDPGVSAF Sbjct: 6 NQESQTGNVPAAS---AATPGPKPASAGGGKGAEGQSVVRRLQSELMALMMGGDPGVSAF 62
Query: 274 PEGDNIFSWIGTIKGSAGTVYETLSFKLSLKFPTDYPFKPPTVKFDPPCFHPNVDQYGNI 453 PEGDN+ W+GTI GSAGT YE S++L+L F T+YP+KPP V+FD PCFHPNVD +GNI Sbjct: 63 PEGDNMLHWVGTIDGSAGTAYEGTSYRLALAFTTEYPYKPPKVRFDTPCFHPNVDVHGNI 122
Query: 454 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNSYAAA 576 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLN+ AAA Sbjct: 123 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAA 163
>tr|B4FCG1|B4FCG1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 183
Score = 212 bits (539), Expect = 1e-53 Identities = 107/161 (66%), Positives = 121/161 (75%), Gaps = 4/161 (2%) Frame = +1
Query: 106 NSRQQLGNFAIATSPPASIKQPKTVS----NPVDTHSVSRRLQSELMVLMTRGDPGVSAF 273 N Q GN + A+ A+ PK S + SV RRLQSELM LM GDPGVSAF Sbjct: 6 NQESQTGNVSAAS---AAAPGPKPASAGAGKGAEGQSVVRRLQSELMALMMGGDPGVSAF 62
Query: 274 PEGDNIFSWIGTIKGSAGTVYETLSFKLSLKFPTDYPFKPPTVKFDPPCFHPNVDQYGNI 453 PEGDN+ W+GTI GSAGT YE S++L+L F +YP+KPP V+FD PCFHPNVD +GNI Sbjct: 63 PEGDNMLHWVGTIAGSAGTAYEGTSYRLALAFTAEYPYKPPKVRFDTPCFHPNVDVHGNI 122
Query: 454 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNSYAAA 576 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLN+ AAA Sbjct: 123 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAA 163
>tr|A5BHQ5|A5BHQ5_VITVI Ubiquitin carrier protein OS=Vitis vinifera GN=GSVIVT00022226001 PE=3 SV=1 Length = 177
Score = 210 bits (534), Expect = 5e-53 Identities = 104/141 (73%), Positives = 112/141 (79%) Frame = +1
Query: 154 ASIKQPKTVSNPVDTHSVSRRLQSELMVLMTRGDPGVSAFPEGDNIFSWIGTIKGSAGTV 333 A+ KQP + VDT SV +RLQSELM LM GD G+SAFPE DNIF W GTI GS TV Sbjct: 18 AATKQPLPPAKSVDTQSVLKRLQSELMALMMSGDGGISAFPEEDNIFCWKGTINGSKDTV 77
Query: 334 YETLSFKLSLKFPTDYPFKPPTVKFDPPCFHPNVDQYGNICLDILQDKWSSAYDVRTILL 513 +E +KLSL FPTDYPFKPP VKF+ CFHPNVD YGNICLDILQDKWSSAYDVRTILL Sbjct: 78 FEGTEYKLSLSFPTDYPFKPPKVKFETGCFHPNVDVYGNICLDILQDKWSSAYDVRTILL 137
Query: 514 SIQSLLGEPNNDSPLNSYAAA 576 SIQSLLGEPN SPLN+ AAA Sbjct: 138 SIQSLLGEPNISSPLNTQAAA 158
>tr|B6TEH3|B6TEH3_MAIZE Ubiquitin-conjugating enzyme X OS=Zea mays PE=2 SV=1 Length = 183
Score = 209 bits (533), Expect = 7e-53 Identities = 106/161 (65%), Positives = 119/161 (73%), Gaps = 4/161 (2%) Frame = +1
Query: 106 NSRQQLGNFAIATSPPASIKQPKTV----SNPVDTHSVSRRLQSELMVLMTRGDPGVSAF 273 N Q GN A+ A+ PK + SV RRLQSELM LM GDPGVSAF Sbjct: 6 NQESQTGNVPAAS---AAAPGPKPALAGGGKGAEGQSVVRRLQSELMALMMGGDPGVSAF 62
Query: 274 PEGDNIFSWIGTIKGSAGTVYETLSFKLSLKFPTDYPFKPPTVKFDPPCFHPNVDQYGNI 453 PEGDN+ W+GTI GSAGT YE S++L+L F +YP+KPP V+FD PCFHPNVD +GNI Sbjct: 63 PEGDNMLHWVGTIDGSAGTAYEGTSYRLALAFTAEYPYKPPKVRFDTPCFHPNVDVHGNI 122
Query: 454 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNSYAAA 576 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLN+ AAA Sbjct: 123 CLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAA 163
>tr|A9PD53|A9PD53_POPTR Ubiquitin carrier protein OS=Populus trichocarpa PE=2 SV=1 Length = 183
Score = 208 bits (530), Expect = 2e-52 Identities = 106/147 (72%), Positives = 115/147 (78%) Frame = +1
Query: 133 AIATSPPASIKQPKTVSNPVDTHSVSRRLQSELMVLMTRGDPGVSAFPEGDNIFSWIGTI 312 A A + PA KQ T + VDT SV +RLQSELM LM G+ G+SAFPEGDNIF W GTI Sbjct: 15 APAGTTPA--KQTVTAAKIVDTQSVLKRLQSELMALMMSGESGISAFPEGDNIFCWKGTI 72
Query: 313 KGSAGTVYETLSFKLSLKFPTDYPFKPPTVKFDPPCFHPNVDQYGNICLDILQDKWSSAY 492 KGS TV+E +KLSL FP DYPFKPP VKF+ CFHPNVD YGNICLDILQDKWSSAY Sbjct: 73 KGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETSCFHPNVDIYGNICLDILQDKWSSAY 132
Query: 493 DVRTILLSIQSLLGEPNNDSPLNSYAA 573 DVRTILLSIQSLLGEPN SPLN+ AA Sbjct: 133 DVRTILLSIQSLLGEPNISSPLNTQAA 159
>tr|A9PAG1|A9PAG1_POPTR Ubiquitin carrier protein OS=Populus trichocarpa PE=2 SV=1 Length = 179
Score = 204 bits (518), Expect = 4e-51 Identities = 100/137 (72%), Positives = 108/137 (78%) Frame = +1
Query: 163 KQPKTVSNPVDTHSVSRRLQSELMVLMTRGDPGVSAFPEGDNIFSWIGTIKGSAGTVYET 342 KQ + VDT SV +RLQSELM LM G+ G+SAFPEGDNIF W GTI GS TV+E Sbjct: 20 KQTVPSAKTVDTQSVLKRLQSELMALMMSGESGISAFPEGDNIFCWKGTITGSKDTVFEG 79
Query: 343 LSFKLSLKFPTDYPFKPPTVKFDPPCFHPNVDQYGNICLDILQDKWSSAYDVRTILLSIQ 522 +KLSL FP DYPFKPP VKF+ CFHPNVD YGNICLDILQDKWSSAYDVRTILLSIQ Sbjct: 80 TEYKLSLSFPNDYPFKPPKVKFETSCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQ 139
Query: 523 SLLGEPNNDSPLNSYAA 573 SLLGEPN SPLN+ AA Sbjct: 140 SLLGEPNISSPLNTQAA 156
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