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NBDC - LSDB Archive
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DK959891
Clone id TST39A01NGRL0005_O18
Library
Length 679
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_O18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTCATTGTATCCATTCGTGCTCTTCCATGCCCGGGCTCCTGCCGCGCTTAAACGAGCCA
ATTATGTCATGTAACCTCTCTGCCCAAGACAGCTACAACATATCTACCTGGCTTTGATTG
TCTCAAGCTGCCCGTACATGCCGCTATCGACCTCTGTTATATACCTCCTACATGCCCTCG
GCTACTCTCAGCCTTGCCGTGCCAAACTACATATACTGTTGCCCTTTTTTTTCCCCACCG
GATTCATCCTCTTCGCTTTACCAAGGCACACCATATTCTCCACCTTCCCTAGTTGTATCG
TCTCATACAACCACCTGCTGCACCATTTTCTTGCAAGCGCACCCAAATCAGATCTAATTC
ATTCAGTAGCTTCTTATTGGTGAGCCCGAACACTTCGCCAGCTGTTTGTTGCTCTCCTAC
AAGCACTGCTATTGTTTCAAGGGCCTTGTTCACATGCGTTCAAGCCACAACAGGCCTTGC
TCCATTCTTCACTGCTACTCGTCCAACGTTCAGCTTCACTGCACATTTACCACCTCCGAG
GCTACGTACTTGGGGAGAAGGGATTGGCATAGCGCAAGCTATTGAGCTTGCCCCCCTTGC
TTTGCAAAGTGCCTTCATCAATCAATACGTCAAGCTTACTCATCTGCTACTGTTGAGAGC
ATCTGTTGAATTTTCCATC
■■Homology search results ■■ -
sp_hit_id Q05612
Definition sp|Q05612|YD278_YEAST Putative uncharacterized protein YDR278C OS=Saccharomyces cerevisiae
Align length 59
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959891|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_O18, 5'
         (679 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05612|YD278_YEAST Putative uncharacterized protein YDR278C O...    33   1.4  
sp|P18538|VGLB_GAHVR Glycoprotein B OS=Gallid herpesvirus 2 (str...    33   1.8  
sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=...    32   3.1  
sp|Q0HIF6|CHEB2_SHESM Chemotaxis response regulator protein-glut...    32   3.1  
sp|Q02265|VE4_HPV13 Probable protein E4 OS=Human papillomavirus ...    32   4.1  
sp|P04275|VWF_HUMAN von Willebrand factor OS=Homo sapiens GN=VWF...    31   5.3  
sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2         31   5.3  
sp|Q0HVI0|CHEB2_SHESR Chemotaxis response regulator protein-glut...    31   5.3  
sp|Q5M7C3|SP13B_XENLA Histone deacetylase complex subunit SAP130...    31   6.9  
sp|Q10426|RIK1_SCHPO Silencing protein rik1 OS=Schizosaccharomyc...    30   9.0  
sp|A4IHD2|ARIP4_XENTR Helicase ARIP4 OS=Xenopus tropicalis GN=ra...    30   9.0  
sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus ...    30   9.1  

>sp|Q05612|YD278_YEAST Putative uncharacterized protein YDR278C
           OS=Saccharomyces cerevisiae GN=YDR278C PE=5 SV=1
          Length = 105

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 159 IYLLHALGYSQPCRAKLHILLPFFFPTGFILFALPRHTIFSTFPSCIV----SYNHLLH 323
           I++L  L     C A  HILL   F    +LFALP+HT+     SC V    SYN+ +H
Sbjct: 46  IHMLIHLPLLFHCDATSHILLISIF--FLLLFALPQHTMGINSTSCCVHFSSSYNYNVH 102


>sp|P18538|VGLB_GAHVR Glycoprotein B OS=Gallid herpesvirus 2 (strain
           RB-1b) GN=GB PE=3 SV=1
          Length = 865

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +2

Query: 413 SPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPPR-------LRTWGEGIGI 571
           SP++  + SR + + VQ +   + F+    P  S    L PPR          WGEGI I
Sbjct: 22  SPSTQNVTSREVVSSVQLSEEESTFYLCPPPVGSTVIRLEPPRKCPEPRKATEWGEGIAI 81

Query: 572 AQAIELAP 595
                ++P
Sbjct: 82  LFKENISP 89


>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus
           GN=Rnf44 PE=2 SV=1
          Length = 407

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = +2

Query: 83  PKTATTYLPGFDCLKLPVHAAI------DLCYIPPTCPRLLSALPCQTTYTVALFFPHRI 244
           P   + ++PG    +LP  + +       LC +PP  P+L+ A   Q      L  P+  
Sbjct: 95  PLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPP--PQLIQACTMQQ-----LPGPYHT 147

Query: 245 HPLRFTKAHHILHLP*LYRLIQPPAAP 325
           +P   +  H+ILH P       PPA P
Sbjct: 148 YPHLISSDHYILHPP-------PPAPP 167


>sp|Q0HIF6|CHEB2_SHESM Chemotaxis response regulator
           protein-glutamate methylesterase 2 OS=Shewanella sp.
           (strain MR-4) GN=cheB2 PE=3 SV=1
          Length = 351

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 329 SCKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTC-VQATTGLAPFFTATRP 505
           S    ++++   +  ++V P+  PA+     +T +V+    T   +A   L   F A  P
Sbjct: 128 SAAHAKLKTQRAAPAVVVQPSHKPALSSRVINTQLVAIGASTGGTEAILSLLQQFPAVMP 187

Query: 506 TFSFTAHLPPPRLRTWGE 559
               T H+PP   RT+ E
Sbjct: 188 PIVITQHMPPGFTRTFAE 205


>sp|Q02265|VE4_HPV13 Probable protein E4 OS=Human papillomavirus
           type 13 GN=E4 PE=3 SV=1
          Length = 118

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +2

Query: 308 QPPAAPFS--CKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTCVQATTGLA 481
           Q PAAP    CKR  +  N      L +P T  A+C S T+T          VQ TT   
Sbjct: 48  QCPAAPRKNVCKRRLVNDNEDLHVPLETPRTHKALCVSQTTTP-------WTVQTTTSTL 100

Query: 482 PFFTATRPTFSFTAHL 529
              T T+   + T  L
Sbjct: 101 TITTITKDGTTVTVQL 116


>sp|P04275|VWF_HUMAN von Willebrand factor OS=Homo sapiens GN=VWF PE=1
            SV=2
          Length = 2813

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
 Frame = +2

Query: 8    VSIRALPCPGSCRA*TSQLCHVTSLPKTATTYLPGFDCLKLPVHAAIDLCYIPPT--C-- 175
            V+    PCP + +A T  LC V  L + A    P ++C+  PV      C +PP   C  
Sbjct: 2289 VNCTTQPCP-TAKAPTCGLCEVARLRQNADQCCPEYECVCDPVS-----CDLPPVPHCER 2342

Query: 176  ---PRLLSALPCQTTYTVAL------------FFPHRIHPLRFTK 265
               P L +   C+  +T A               PHR+  LR T+
Sbjct: 2343 GLQPTLTNPGECRPNFTCACRKEECKRVSPPSCPPHRLPTLRKTQ 2387


>sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2
          Length = 5179

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +2

Query: 380  VSPNTSPAVCCSPTSTAIVSRALFTCVQATTGL---APFFTATRPTFSFTAHLPPPRLRT 550
            V+P  +P    +PT+T I +    T     TG     P  T+T P    T   PPP   T
Sbjct: 4161 VTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPESST 4220


>sp|Q0HVI0|CHEB2_SHESR Chemotaxis response regulator
           protein-glutamate methylesterase 2 OS=Shewanella sp.
           (strain MR-7) GN=cheB2 PE=3 SV=1
          Length = 351

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 329 SCKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTC-VQATTGLAPFFTATRP 505
           S    ++++   +  ++V P+  PA+     +T +V+    T   +A   L   F A  P
Sbjct: 128 SAAHAKLKTQRAAPAVVVQPSHKPALSNRVINTQLVAIGASTGGTEAILSLLQQFPAVMP 187

Query: 506 TFSFTAHLPPPRLRTWGE 559
               T H+PP   RT+ E
Sbjct: 188 PIVITQHMPPGFTRTFAE 205


>sp|Q5M7C3|SP13B_XENLA Histone deacetylase complex subunit SAP130-B
           OS=Xenopus laevis GN=sap130-B PE=2 SV=1
          Length = 1041

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
 Frame = +2

Query: 416 PTSTAIVSRALFTCVQATTGLAPFFTAT---------RPTFSFTAHLPP 535
           P +T  VS A+   V AT   +P  T T         RPT +F  H PP
Sbjct: 245 PVTTTSVSPAVVATVSATRAQSPVITTTPAHAAEPVLRPTLAFQQHPPP 293


>sp|Q10426|RIK1_SCHPO Silencing protein rik1 OS=Schizosaccharomyces
           pombe GN=rik1 PE=1 SV=2
          Length = 1040

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 129 CPYMPLSTSVIYLLHALGYSQPCRAKLHILLPFFFPTGFILFALPRHTIFSTFPSCIVSY 308
           C   P + S+IY  HAL      + K+  +L        +L + P H +F  FPS  V++
Sbjct: 362 CAGTPRNASLIYFQHALKLDILGQTKISGIL-----RAMVLPSYPEHKLFLGFPSETVAF 416

Query: 309 N 311
           N
Sbjct: 417 N 417
tr_hit_id B4L481
Definition tr|B4L481|B4L481_DROMO GI15699 OS=Drosophila mojavensis
Align length 69
Score (bit) 40.0
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959891|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_O18, 5'
         (679 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4L481|B4L481_DROMO GI15699 OS=Drosophila mojavensis GN=GI156...    40   0.14 
tr|B6KYB4|B6KYB4_BRAFL Putative uncharacterized protein OS=Branc...    36   2.0  
tr|A6SF26|A6SF26_BOTFB Putative uncharacterized protein OS=Botry...    36   2.0  
tr|Q4S628|Q4S628_TETNG Chromosome 9 SCAF14729, whole genome shot...    35   3.4  
tr|B6M8V1|B6M8V1_BRAFL Putative uncharacterized protein OS=Branc...    35   3.4  
tr|B4JNT3|B4JNT3_DROGR GH24882 (Fragment) OS=Drosophila grimshaw...    35   3.4  
tr|A4I578|A4I578_LEIIN Putative uncharacterized protein OS=Leish...    34   7.5  
tr|A4XD18|A4XD18_SALTO LPXTG-motif cell wall anchor domain OS=Sa...    34   9.8  
tr|B7GD26|B7GD26_PHATR Predicted protein OS=Phaeodactylum tricor...    34   9.8  

>tr|B4L481|B4L481_DROMO GI15699 OS=Drosophila mojavensis GN=GI15699
            PE=4 SV=1
          Length = 2164

 Score = 40.0 bits (92), Expect = 0.14
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = +2

Query: 413  SPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPPRLRTWGEGIGIAQAIELA 592
            SP +T+  + A+     ATT      T T  T S T  LP  RL  WG+ +G+      A
Sbjct: 1948 SPAATSATTAAITATAAATTAATTTATTTASTSSTTGTLPKDRLEEWGKPLGLPSP---A 2004

Query: 593  PLALQSAFI 619
            PL ++ A I
Sbjct: 2005 PLPVEGADI 2013


>tr|B6KYB4|B6KYB4_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_117208 PE=4 SV=1
          Length = 2419

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 329  SCKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTAT-RP 505
            S   T + S++ SS +    +TS A   S T+T   +    T  +ATT   P   AT RP
Sbjct: 1191 SSSTTPLSSSASSSTM----STSSASSSSSTTTTKATTTTSTKAEATTSTQPLVLATSRP 1246

Query: 506  TFSFTAHLPPPRLRT 550
            T   + HLPP R  T
Sbjct: 1247 TTVTSTHLPPTRSPT 1261


>tr|A6SF26|A6SF26_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_10997
           PE=4 SV=1
          Length = 639

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 48/174 (27%), Positives = 67/174 (38%), Gaps = 7/174 (4%)
 Frame = +2

Query: 8   VSIRALPCP-GSCRA*TSQLCHVTSLPKTAT------TYLPGFDCLKLPVHAAIDLCYIP 166
           +S   +PCP G     T+  CH T++P + T      T LP   CL           Y  
Sbjct: 427 LSSAGVPCPTGGFITATTTSCHETAVPTSYTWTPVPPTILPCKTCLP----------YTM 476

Query: 167 PTCPRLLSALPCQTTYTVALFFPHRIHPLRFTKAHHILHLP*LYRLIQPPAAPFSCKRTQ 346
           PTCP + S LP  + Y + +       P   T +  +  +P     I  PA       T 
Sbjct: 477 PTCP-VYSTLPPSSIYVIPV-------PTLGTHSEPVSRVP--ETSIYVPAPSPVTYTTS 526

Query: 347 IRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTATRPT 508
           I     ++++     T PA    PT+TAIVS          T +AP    T  T
Sbjct: 527 IYGVGVTTYI-----TYPA---GPTATAIVSEVEGVITTIITYIAPTPAPTHAT 572


>tr|Q4S628|Q4S628_TETNG Chromosome 9 SCAF14729, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00023477001 PE=4 SV=1
          Length = 412

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +2

Query: 389 NTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPPRLRTWGEGIG 568
           +TSP+   +PTST+  SR   + V  TT + P  T+T    + T   P P  +       
Sbjct: 208 STSPSTAATPTSTSAASRVSSSQV-PTTPITPSATSTASPTATTPSTPAPSSQAAAAAAS 266

Query: 569 IAQAIELAPLALQSAFIN-----QYVKLTHLL 649
            AQ I+L  L    A +N     Q V LT +L
Sbjct: 267 PAQPIQLRDLQSILATMNVPSSGQGVDLTSVL 298


>tr|B6M8V1|B6M8V1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_79554 PE=4 SV=1
          Length = 960

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 505 WTSSSEEWSKACCGLNACEQGP*NNSSACRRATNSWR 395
           W       SK+C  +N C   P  N  ACR  TNS+R
Sbjct: 562 WNGYRLSGSKSCVEINECASNPCRNGGACRDLTNSYR 598


>tr|B4JNT3|B4JNT3_DROGR GH24882 (Fragment) OS=Drosophila grimshawi
            GN=GH24882 PE=4 SV=1
          Length = 6469

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
 Frame = +2

Query: 356  NSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTCVQ------ATTGLAPFFTATRPTFSF 517
            N  +SF+  SP +S  V  + T+T I S A  T         ATT      T +  T S 
Sbjct: 6229 NLLASFISSSPASS-TVPTTLTATTIASAATVTATATATDATATTATTATTTTSGSTSST 6287

Query: 518  TAHLPPPRLRTWGEGIGIAQAIELAPLALQSAFI 619
            +  LP  RL  WG+ +G+      APL ++   I
Sbjct: 6288 SGTLPKDRLEEWGKPLGLPSP---APLPVEGGDI 6318


>tr|A4I578|A4I578_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ30.0830 PE=4 SV=1
          Length = 487

 Score = 34.3 bits (77), Expect = 7.5
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 377 LVSPNTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPP 538
           L SP++SPA   +P +T ++     + +  T+   P   A  PT +   H PPP
Sbjct: 152 LASPSSSPATLNAPYTTPVIPPRASSTLTTTSPSLPLLPAPPPTPAGLPHSPPP 205


>tr|A4XD18|A4XD18_SALTO LPXTG-motif cell wall anchor domain
           OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818
           / CNB-440) GN=Strop_4397 PE=4 SV=1
          Length = 493

 Score = 33.9 bits (76), Expect = 9.8
 Identities = 31/90 (34%), Positives = 34/90 (37%)
 Frame = +2

Query: 383 SPNTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPPRLRTWGEG 562
           SP TSP    SPT TA VS        + TG  P  T + P  S     P P   +    
Sbjct: 406 SPTTSPTATGSPTPTATVSP-----TPSATGTVPSETPSAPPTSSAPVTPTPTTPS---- 456

Query: 563 IGIAQAIELAPLALQSAFINQYVKLTHLLL 652
                   L  L    A I  YV LT LLL
Sbjct: 457 --------LGGLPTTGAAITSYVLLTVLLL 478


>tr|B7GD26|B7GD26_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_50133 PE=4 SV=1
          Length = 629

 Score = 33.9 bits (76), Expect = 9.8
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
 Frame = +2

Query: 296 YRLIQPPAAPFSCKRTQIR----SNSFSSFLLVSPNTSPAVCCSPTST--AIVSRALFTC 457
           Y+L  PP  P++C+R   R        ++   V P  SP+   S  S+  ++VS     C
Sbjct: 121 YKLHLPPPLPWTCRRRANRLRQEQEQQAAIAKVLPEPSPSDQDSSVSSRESLVSHTSVEC 180

Query: 458 VQATTGLAPFFTATR--PTFSFTAHLPP 535
            QA T      T T    T S T+H  P
Sbjct: 181 AQAETSTTTLTTTTSTITTSSSTSHTTP 208