DK959920 [AcEST]

DK959920
Clone id	TST39A01NGRL0005_P23
Library	TST39
Length	686
Definition	Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_P23. 5' end sequence.
Accession	DK959920
Tissue type	prothallia with plantlets
Developmental stage	gametophytes with sporophytes
Contig ID	CL2933Contig1
Sequence	ATCGTTGTTGAGCTAGCGTTTCTCATTCCCCCTTTCGTTCTCACACGTTTTCTATACACA CATACCCTCATACTAGGTTACATTTTTGTTGAAGAATCTTGCTCTGCAGCCGCTTCGTTT GCTTGTGCGACCTATCAACTTACCCACGTCTTCTCCTTACCGCACTCTCACACTCATACA CATCACCTCTCCCCCTAAGCTCTCTTCCCTTGATCACATACGTAGTCCTAACGCAGCCAC GCTCTCTTCTTCCTCGTCAACACAGGCACACACGCTTACACACATTCTACTGCATAGTTT TTTGACTCCCTTCGCCTTCATCTTTCTTGCAAACAGACGAGGGTGCGAAGTATCACAATA CACAGCAGGCGAGTAGCGGCAGGGCTGACTTCCTTGGCGTTGTGCGTTGAAAACCTCCCT GTCTTCGGGTGACGTCTCTAGCAGCAAAGGGCTGCGAGCGGGGGTGCAGCTATTATATAA GAGTAGAGTAAGCTGAGAATATATTGGATGCCAAGGTGATCAAGAAAGAAGAAGAGCGTT TGCAGGATACATAGCAAGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAATATGCAGTGCTACTTGAGCTCAAGGAGGGGCGGGGGCATCG GGCAGCAGGCCACGGAGGCAGAGGCG
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	P16528
Definition	sp\|P16528\|ICLR_ECOLI Acetate operon repressor OS=Escherichia coli (strain K12)
Align length	48
Score (bit)	32.0
E-value	3.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK959920\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_P23, 5' (686 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|P16528\|ICLR_ECOLI Acetate operon repressor OS=Escherichia col... 32 3.2 sp\|P17430\|ICLR_SALTY Acetate operon repressor OS=Salmonella typh... 31 5.4 >sp\|P16528\|ICLR_ECOLI Acetate operon repressor OS=Escherichia coli (strain K12) GN=iclR PE=1 SV=1 Length = 274 Score = 32.0 bits (71), Expect = 3.2 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = +1 Query: 265 GTHAYTHSTAFFDSLRLHLSCKQTRVRSITIHSRRVAAGLTSLALCV 408 G HAYTH+T + L QTR R + A GL LA C+ Sbjct: 182 GLHAYTHAT--LVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCLAACI 227 >sp\|P17430\|ICLR_SALTY Acetate operon repressor OS=Salmonella typhimurium GN=iclR PE=4 SV=2 Length = 274 Score = 31.2 bits (69), Expect = 5.4 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = +1 Query: 265 GTHAYTHSTAFFDSLRLHLSCKQTRVRSITIHSRRVAAGLTSLALCV 408 G HAYTH+T L L QTR R + A GL +A C+ Sbjct: 182 GLHAYTHAT--LVSPLHLKDDLAQTRKRGYSFDDEEHALGLRCVASCI 227
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK959920\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_P23, 5' (686 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****