DK959920
Clone id TST39A01NGRL0005_P23
Library
Length 686
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_P23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
ATCGTTGTTGAGCTAGCGTTTCTCATTCCCCCTTTCGTTCTCACACGTTTTCTATACACA
CATACCCTCATACTAGGTTACATTTTTGTTGAAGAATCTTGCTCTGCAGCCGCTTCGTTT
GCTTGTGCGACCTATCAACTTACCCACGTCTTCTCCTTACCGCACTCTCACACTCATACA
CATCACCTCTCCCCCTAAGCTCTCTTCCCTTGATCACATACGTAGTCCTAACGCAGCCAC
GCTCTCTTCTTCCTCGTCAACACAGGCACACACGCTTACACACATTCTACTGCATAGTTT
TTTGACTCCCTTCGCCTTCATCTTTCTTGCAAACAGACGAGGGTGCGAAGTATCACAATA
CACAGCAGGCGAGTAGCGGCAGGGCTGACTTCCTTGGCGTTGTGCGTTGAAAACCTCCCT
GTCTTCGGGTGACGTCTCTAGCAGCAAAGGGCTGCGAGCGGGGGTGCAGCTATTATATAA
GAGTAGAGTAAGCTGAGAATATATTGGATGCCAAGGTGATCAAGAAAGAAGAAGAGCGTT
TGCAGGATACATAGCAAGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAATATGCAGTGCTACTTGAGCTCAAGGAGGGGCGGGGGCATCG
GGCAGCAGGCCACGGAGGCAGAGGCG
■■Homology search results ■■ -
sp_hit_id P16528
Definition sp|P16528|ICLR_ECOLI Acetate operon repressor OS=Escherichia coli (strain K12)
Align length 48
Score (bit) 32.0
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959920|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_P23, 5'
(686 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P16528|ICLR_ECOLI Acetate operon repressor OS=Escherichia col... 32 3.2
sp|P17430|ICLR_SALTY Acetate operon repressor OS=Salmonella typh... 31 5.4

>sp|P16528|ICLR_ECOLI Acetate operon repressor OS=Escherichia coli
(strain K12) GN=iclR PE=1 SV=1
Length = 274

Score = 32.0 bits (71), Expect = 3.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +1

Query: 265 GTHAYTHSTA*FFDSLRLHLSCKQTRVRSITIHSRRVAAGLTSLALCV 408
G HAYTH+T + L QTR R + A GL LA C+
Sbjct: 182 GLHAYTHAT--LVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCLAACI 227


>sp|P17430|ICLR_SALTY Acetate operon repressor OS=Salmonella
typhimurium GN=iclR PE=4 SV=2
Length = 274

Score = 31.2 bits (69), Expect = 5.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +1

Query: 265 GTHAYTHSTA*FFDSLRLHLSCKQTRVRSITIHSRRVAAGLTSLALCV 408
G HAYTH+T L L QTR R + A GL +A C+
Sbjct: 182 GLHAYTHAT--LVSPLHLKDDLAQTRKRGYSFDDEEHALGLRCVASCI 227


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959920|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_P23, 5'
(686 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******