BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959941|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_A20, 5'
         (665 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O24111|RS5_NICPL 40S ribosomal protein S5 (Fragment) OS=Nicot...    32   3.0  
sp|Q96MP5|ZSWM3_HUMAN Zinc finger SWIM domain-containing protein...    32   3.9  
sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer...    32   3.9  
sp|P51427|RS52_ARATH 40S ribosomal protein S5-2 OS=Arabidopsis t...    31   6.7  
sp|Q9ZUT9|RS51_ARATH 40S ribosomal protein S5-1 OS=Arabidopsis t...    31   6.7  

>sp|O24111|RS5_NICPL 40S ribosomal protein S5 (Fragment)
           OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1
          Length = 154

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 20/31 (64%), Positives = 22/31 (70%), Gaps = 5/31 (16%)
 Frame = +3

Query: 558 MQVICLL-----IVVIVDAVINSGLLEDATR 635
           M++I LL     I VIVDAVINSG  EDATR
Sbjct: 47  MEIIHLLTDLNPIQVIVDAVINSGPREDATR 77


>sp|Q96MP5|ZSWM3_HUMAN Zinc finger SWIM domain-containing protein 3
           OS=Homo sapiens GN=ZSWIM3 PE=1 SV=2
          Length = 696

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 557 DASDMSTDSCYC*CSYQQWSFGGCHSLL 640
           D+  +S D C C CS+QQW    C  +L
Sbjct: 538 DSHQVSKDGCSCSCSFQQWYHLPCRHIL 565


>sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer
           arietinum GN=RPS5 PE=2 SV=1
          Length = 197

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 5/31 (16%)
 Frame = +3

Query: 558 MQVICLL-----IVVIVDAVINSGLLEDATR 635
           M++I LL     I VIVDAV+NSG  EDATR
Sbjct: 90  MEIIHLLTDQNPIQVIVDAVVNSGPREDATR 120


>sp|P51427|RS52_ARATH 40S ribosomal protein S5-2 OS=Arabidopsis
           thaliana GN=RPS5B PE=1 SV=2
          Length = 207

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 5/31 (16%)
 Frame = +3

Query: 558 MQVICLL-----IVVIVDAVINSGLLEDATR 635
           M++I LL     I VI+DA++NSG  EDATR
Sbjct: 100 MEIIHLLSDLNPIQVIIDAIVNSGPREDATR 130


>sp|Q9ZUT9|RS51_ARATH 40S ribosomal protein S5-1 OS=Arabidopsis
           thaliana GN=RPS5A PE=1 SV=1
          Length = 207

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 5/31 (16%)
 Frame = +3

Query: 558 MQVICLL-----IVVIVDAVINSGLLEDATR 635
           M++I LL     I VI+DA++NSG  EDATR
Sbjct: 100 MEIIHLLSDLNPIQVIIDAIVNSGPREDATR 130

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959941|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_A20, 5'
         (665 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******