DK959941
Clone id TST39A01NGRL0006_A20
Library
Length 665
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_A20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CAATTTTCAACAAAGTCATGATGTGGGGCTCCTCCATGGTGGACAATATTACAACCAGAA
GGGCAGTAGCAGGCACGACCCTACTTTCAACAAAGTCATGAGCTACATACTCGTGGGCCT
CTTTGTTTACAGAGTATTACTTCAAGGCTGATGATGACCATTGTTGTTAAAGTGGTGATT
CTGCCATAGCCGCCAGTTTTGAGAGCCTCTGCACCGAACTCCTTCAAGGCAGGACTTGGA
GAGGCGGACATGGAAAAGCACATGGATGACTGATGGCATTGAAAGAGAAGACAACATCAA
TGGGAATAGTGCACGTGTATCCTTAGCATTAAATATTATTCAAGCGTACTGTTCAAATTA
TATCAATCGTGTGGACTGTTTTTTGTGATACAAAACCAAAATTGCTTCTATAGGCATTTC
ATACACTAGGAAAATCCTCTGCATGTAGATGTGTTCGGTAGGCAACAACCTGCTCATTTC
CCGATCCAAAGTTTTTTCTTCCTTTTATTAGCCTTGCCTTCTTTTGGGCCTGCCCCAAAG
AGGCTGAGGCCCTAGTGATGCAAGTGATATGTCTACTGATAGTTGTTATTGTTGATGCAG
TTATCAACAGTGGTCTTTTGGAGGATGCCACTCGTTGTTGTTAGAAGACAGGCTATTGAT
ATCTC
■■Homology search results ■■ -
sp_hit_id O24111
Definition sp|O24111|RS5_NICPL 40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia
Align length 31
Score (bit) 32.0
E-value 3.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959941|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_A20, 5'
(665 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O24111|RS5_NICPL 40S ribosomal protein S5 (Fragment) OS=Nicot... 32 3.0
sp|Q96MP5|ZSWM3_HUMAN Zinc finger SWIM domain-containing protein... 32 3.9
sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer... 32 3.9
sp|P51427|RS52_ARATH 40S ribosomal protein S5-2 OS=Arabidopsis t... 31 6.7
sp|Q9ZUT9|RS51_ARATH 40S ribosomal protein S5-1 OS=Arabidopsis t... 31 6.7

>sp|O24111|RS5_NICPL 40S ribosomal protein S5 (Fragment)
OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1
Length = 154

Score = 32.0 bits (71), Expect = 3.0
Identities = 20/31 (64%), Positives = 22/31 (70%), Gaps = 5/31 (16%)
Frame = +3

Query: 558 MQVICLL-----IVVIVDAVINSGLLEDATR 635
M++I LL I VIVDAVINSG EDATR
Sbjct: 47 MEIIHLLTDLNPIQVIVDAVINSGPREDATR 77


>sp|Q96MP5|ZSWM3_HUMAN Zinc finger SWIM domain-containing protein 3
OS=Homo sapiens GN=ZSWIM3 PE=1 SV=2
Length = 696

Score = 31.6 bits (70), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2

Query: 557 DASDMSTDSCYC*CSYQQWSFGGCHSLL 640
D+ +S D C C CS+QQW C +L
Sbjct: 538 DSHQVSKDGCSCSCSFQQWYHLPCRHIL 565


>sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer
arietinum GN=RPS5 PE=2 SV=1
Length = 197

Score = 31.6 bits (70), Expect = 3.9
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 5/31 (16%)
Frame = +3

Query: 558 MQVICLL-----IVVIVDAVINSGLLEDATR 635
M++I LL I VIVDAV+NSG EDATR
Sbjct: 90 MEIIHLLTDQNPIQVIVDAVVNSGPREDATR 120


>sp|P51427|RS52_ARATH 40S ribosomal protein S5-2 OS=Arabidopsis
thaliana GN=RPS5B PE=1 SV=2
Length = 207

Score = 30.8 bits (68), Expect = 6.7
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 5/31 (16%)
Frame = +3

Query: 558 MQVICLL-----IVVIVDAVINSGLLEDATR 635
M++I LL I VI+DA++NSG EDATR
Sbjct: 100 MEIIHLLSDLNPIQVIIDAIVNSGPREDATR 130


>sp|Q9ZUT9|RS51_ARATH 40S ribosomal protein S5-1 OS=Arabidopsis
thaliana GN=RPS5A PE=1 SV=1
Length = 207

Score = 30.8 bits (68), Expect = 6.7
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 5/31 (16%)
Frame = +3

Query: 558 MQVICLL-----IVVIVDAVINSGLLEDATR 635
M++I LL I VI+DA++NSG EDATR
Sbjct: 100 MEIIHLLSDLNPIQVIIDAIVNSGPREDATR 130


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959941|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_A20, 5'
(665 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******