NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959958
Clone id TST39A01NGRL0006_B15
Library
Length 674
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_B15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCAACTGACCCTCCATAGCTCGTGTCACGGCGAAGTAGAGAAGGTATGGCCGTCGCTGCG
AGGCCCAGGCCTCCTAGCGCAGACACAACAAGCGCTTCTGCTGCCCACAAAGAAAAGGAA
ACCTTTCTCATGTCCTCGCGCCTATATAGAAAAGTCCGACGCCGTCTATGACTTCTTCAA
CAAGGTGCGAGGCTCTCTTCCTGTGATTGGTCTATTCTTTCGCATTCTCAGCGACGATGG
CGGCATTGGCTCTGATCGTATCCAGTTCAAAGAGTTCTGCACACGGGTCTTCCGCAACTT
TAGCCTTGAAACCACCCGGGCCTTCTACGACTTTGAGGATCGTCATGGCTCTGCAGCAAG
GCCTCAATATGTGCTGCTTTGGTGCTGGGCAGCAGCTTTAGGTGCAGGTTTGCTGAAGAG
TGAAGATATGATGAAGGGTGCGAACCGGCTACGTGCTACTTTTGACATATTCTATGAAGA
AGAAATTCTCAATCTCTTGATGGATGAGGCGATGAAGAAACGTCAAAAGTCCAAGTCTGC
TGTACCATTTGTTCCTTATGAAGCTAGGGCAGAAAAAGCATTGGAGGCAATCTGTAAGTG
TTGCATCGGCAAACAGGACATTGACGAGGAAGATGCCGAGCTACTAATATGTATGTTGCA
AGGCATCTTCCCTG
■■Homology search results ■■ -
sp_hit_id A7IAR4
Definition sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Methanoregula boonei (strain 6A8)
Align length 64
Score (bit) 32.3
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959958|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_B15, 5'
         (674 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Meth...    32   2.3  

>sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB
           OS=Methanoregula boonei (strain 6A8) GN=tfb PE=3 SV=1
          Length = 334

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +2

Query: 476 EEEILNLLMDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDAELLICM 655
           E E L LL  E    R+  KS +     E +AE   E +C  C G+Q + + +   L+C 
Sbjct: 3   EVEKLKLLQSE----REALKSRIKVKEQEKKAENHTETVCPECGGRQLVHDYERAELVCQ 58

Query: 656 LQGI 667
             G+
Sbjct: 59  SCGL 62
tr_hit_id A9NNS3
Definition tr|A9NNS3|A9NNS3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 179
Score (bit) 179.0
E-value 2.0e-43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959958|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_B15, 5'
         (674 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NNS3|A9NNS3_PICSI Putative uncharacterized protein OS=Picea...   179   2e-43
tr|A9T9Z8|A9T9Z8_PHYPA Predicted protein (Fragment) OS=Physcomit...   175   3e-42
tr|A9PID2|A9PID2_POPTR Putative uncharacterized protein OS=Popul...   156   1e-36
tr|A7PMA9|A7PMA9_VITVI Chromosome chr14 scaffold_21, whole genom...   155   2e-36
tr|Q5QTN8|Q5QTN8_SOLTU Calcium homeostasis regulator CHoR1 OS=So...   146   1e-33
tr|Q9M3C6|Q9M3C6_ARATH Putative uncharacterized protein T26I12.1...   145   3e-33
tr|B8B092|B8B092_ORYSI Putative uncharacterized protein OS=Oryza...   141   4e-32
tr|Q65X91|Q65X91_ORYSJ Os05g0526200 protein OS=Oryza sativa subs...   139   2e-31
tr|B6TZN2|B6TZN2_MAIZE Calcium homeostasis regulator CHoR1 OS=Ze...   134   5e-30
tr|B4FSG1|B4FSG1_MAIZE Putative uncharacterized protein OS=Zea m...   134   5e-30
tr|A3B612|A3B612_ORYSJ Putative uncharacterized protein OS=Oryza...   101   5e-20
tr|A6N1L7|A6N1L7_ORYSI Calcium homeostasis regulator chor1 (Frag...    82   2e-14
tr|A8JH83|A8JH83_CHLRE Predicted protein OS=Chlamydomonas reinha...    64   7e-09
tr|B6T392|B6T392_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.9  

>tr|A9NNS3|A9NNS3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 298

 Score =  179 bits (453), Expect = 2e-43
 Identities = 85/179 (47%), Positives = 123/179 (68%)
 Frame = +2

Query: 137 RAYIEKSDAVYDFFNKVRGSLPVIGLFFRILSDDGGIGSDRIQFKEFCTRVFRNFSLETT 316
           RAY+EK D + +  +K+ GSLPV+GL +R+L+++GG+  ++I+F EFC RV +  + E +
Sbjct: 72  RAYLEKPDRMKEIASKIIGSLPVVGLLYRLLNEEGGVAGEQIRFAEFCKRVEKRCTPEAS 131

Query: 317 RAFYDFEDRHGSAARPQYVXXXXXXXXXXXXXXKSEDMMKGANRLRATFDIFYEEEILNL 496
            AFY+F DR+G    P++V              KS++++ GA+RLR +FDI YEE+   +
Sbjct: 132 MAFYEFRDRYGKTGNPRFVLVWCWVAAVGAGLVKSDEILLGASRLRVSFDIQYEEDNFII 191

Query: 497 LMDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDAELLICMLQGIFP 673
           LMD+A+ KR KSKS++P +P EA+A KALEAICKCCI    I+EEDA LL  ML  +FP
Sbjct: 192 LMDQALAKRAKSKSSLPDIPVEAKAAKALEAICKCCIDNDVIEEEDARLLCIMLCAVFP 250


>tr|A9T9Z8|A9T9Z8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46771 PE=4 SV=1
          Length = 201

 Score =  175 bits (443), Expect = 3e-42
 Identities = 90/179 (50%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
 Frame = +2

Query: 140 AYIE-KSDAVYDFFNKVRGSLPVIGLFFRILSDDGGIGSDRIQFKEFCTRVFRNFSLETT 316
           AY+E + + V  FF  V+GSLP++GL  R+L+D+GGIG+DRIQ  EF  RV +N S + +
Sbjct: 10  AYLEPEPNPVSQFFKNVQGSLPIVGLLSRLLNDEGGIGNDRIQPVEFAARVQKNCSYKAS 69

Query: 317 RAFYDFEDRHGSAARPQYVXXXXXXXXXXXXXXKSEDMMKGANRLRATFDIFYEEEILNL 496
           +AFY+F++RHG  A+ QYV              KS+D++  A RLR + D+ YE E L L
Sbjct: 70  QAFYEFQERHGPVAKSQYVLLWCWAAAVGAGLLKSDDLIMSAARLRCSNDVHYETENLEL 129

Query: 497 LMDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDAELLICMLQGIFP 673
           LMD+A K+R+KSKS    VP EARAEKAL+AI KCC+G   +DEED  LLI +L  +FP
Sbjct: 130 LMDDAKKRREKSKSPAMNVPIEARAEKALDAIMKCCVGASYLDEEDVPLLITILTTVFP 188


>tr|A9PID2|A9PID2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 290

 Score =  156 bits (395), Expect = 1e-36
 Identities = 82/177 (46%), Positives = 110/177 (62%)
 Frame = +2

Query: 140 AYIEKSDAVYDFFNKVRGSLPVIGLFFRILSDDGGIGSDRIQFKEFCTRVFRNFSLETTR 319
           AY+E  +++  F NKV GSLPV+GL  RILSD+GG+G D I F EF  RV +  ++  +R
Sbjct: 59  AYMENPNSISSFANKVLGSLPVVGLVARILSDEGGVGGDIIDFAEFRRRVGKKCTITDSR 118

Query: 320 AFYDFEDRHGSAARPQYVXXXXXXXXXXXXXXKSEDMMKGANRLRATFDIFYEEEILNLL 499
           AFY+F+DR G A  P YV              KSE++++G  RLR + DI +EEE    L
Sbjct: 119 AFYEFQDRRGRAGDPLYVLLCCWLAAVGAGFLKSEEILEGVARLRLSNDIEFEEETFMAL 178

Query: 500 MDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDAELLICMLQGIF 670
           +++  +KR K+K+A   +P E R EKALEAI  CC GK  I+EED  LL  ML  +F
Sbjct: 179 INDTKEKRAKTKTAATAIPMEVRVEKALEAIYICCYGKDIIEEEDKRLLNVMLSSVF 235


>tr|A7PMA9|A7PMA9_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020749001
           PE=4 SV=1
          Length = 291

 Score =  155 bits (393), Expect = 2e-36
 Identities = 83/192 (43%), Positives = 118/192 (61%), Gaps = 4/192 (2%)
 Frame = +2

Query: 110 KKRKPFS----CPRAYIEKSDAVYDFFNKVRGSLPVIGLFFRILSDDGGIGSDRIQFKEF 277
           + R P+S      R+Y+E ++++    N+V GSLP+IGL  RI +D+GG+G D I F EF
Sbjct: 46  RSRPPYSNGALSIRSYMEDNNSLSSLANRVIGSLPIIGLAARIFNDEGGLGGDIIDFAEF 105

Query: 278 CTRVFRNFSLETTRAFYDFEDRHGSAARPQYVXXXXXXXXXXXXXXKSEDMMKGANRLRA 457
             RV +  S+  +RAFY+F+DR G A  P YV              KSE++++G  RLR 
Sbjct: 106 RRRVGKKCSINDSRAFYEFQDRRGRAGDPLYVLLCCWLAAVGAGLLKSEEILEGVARLRI 165

Query: 458 TFDIFYEEEILNLLMDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDA 637
           + DI +EE+    +M+EA ++R K ++A P +P E RAEKALEAI  CC GK  I+EED 
Sbjct: 166 SNDIEFEEQNFIAIMNEARERRSKLRAATPTIPMEIRAEKALEAIYVCCFGKDPIEEEDE 225

Query: 638 ELLICMLQGIFP 673
            LL  +L  +FP
Sbjct: 226 RLLQIILLAVFP 237


>tr|Q5QTN8|Q5QTN8_SOLTU Calcium homeostasis regulator CHoR1
           OS=Solanum tuberosum PE=2 SV=1
          Length = 290

 Score =  146 bits (369), Expect = 1e-33
 Identities = 80/180 (44%), Positives = 107/180 (59%), Gaps = 1/180 (0%)
 Frame = +2

Query: 137 RAYI-EKSDAVYDFFNKVRGSLPVIGLFFRILSDDGGIGSDRIQFKEFCTRVFRNFSLET 313
           +AY+ E ++ +  F NKV GSLPV GL  RI++++GG+G D I F EF  RV    S+  
Sbjct: 56  KAYMDETTNPISSFANKVIGSLPVFGLIARIVNEEGGVGGDFIDFAEFRRRVGNKCSIND 115

Query: 314 TRAFYDFEDRHGSAARPQYVXXXXXXXXXXXXXXKSEDMMKGANRLRATFDIFYEEEILN 493
           +RAFY+F DR G    P YV              KSE++++G  RL    DI +EE+   
Sbjct: 116 SRAFYEFRDRRGKTGDPLYVLLCCWLAAVGAGLLKSEEILEGVARLSLANDIEFEEQNFI 175

Query: 494 LLMDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDAELLICMLQGIFP 673
            +M+EA KKR K  +  P +P E RAEKALEAI  CC G+  I+EED +LL  ML  +FP
Sbjct: 176 AMMNEARKKRSKLGAPAPTIPMEFRAEKALEAIHVCCYGRDLIEEEDEKLLSTMLNAVFP 235


>tr|Q9M3C6|Q9M3C6_ARATH Putative uncharacterized protein T26I12.130
           (Putative calcium homeostasis regulator) (Putative
           uncharacterized protein At3g55250) OS=Arabidopsis
           thaliana GN=T26I12.130 PE=2 SV=1
          Length = 277

 Score =  145 bits (365), Expect = 3e-33
 Identities = 78/179 (43%), Positives = 105/179 (58%)
 Frame = +2

Query: 137 RAYIEKSDAVYDFFNKVRGSLPVIGLFFRILSDDGGIGSDRIQFKEFCTRVFRNFSLETT 316
           RAYIEK ++   F NKV GSLPVIGL  RI+SD+GG+G D + F EF  RV    + + +
Sbjct: 45  RAYIEKPNSFSTFANKVIGSLPVIGLLARIISDEGGVGRDLVDFAEFRKRVGNKCTPDDS 104

Query: 317 RAFYDFEDRHGSAARPQYVXXXXXXXXXXXXXXKSEDMMKGANRLRATFDIFYEEEILNL 496
           RAFY+F+ R G A  P YV              KSE++++G  R+  + D+ +EE+    
Sbjct: 105 RAFYEFQQRRGKAGEPLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISNDLEFEEQNFIA 164

Query: 497 LMDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDAELLICMLQGIFP 673
           LM EA ++R K     P +P E R EKALE I  CC  +  I+EED +LL  ML  +FP
Sbjct: 165 LMTEARQRRAKLNIDAPTIPMELRVEKALEGIYACCFRRGLIEEEDEKLLKVMLIAVFP 223


>tr|B8B092|B8B092_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20689 PE=4 SV=1
          Length = 271

 Score =  141 bits (355), Expect = 4e-32
 Identities = 77/179 (43%), Positives = 109/179 (60%), Gaps = 1/179 (0%)
 Frame = +2

Query: 140 AYIEKS-DAVYDFFNKVRGSLPVIGLFFRILSDDGGIGSDRIQFKEFCTRVFRNFSLETT 316
           AY+E + ++      ++ G+LPV+GL  RILSD+GG+G D I F EF  RV +  ++  +
Sbjct: 39  AYMEPNPNSPSSIAGRLIGALPVVGLVARILSDEGGVGGDMIDFAEFRRRVSKKCTVMDS 98

Query: 317 RAFYDFEDRHGSAARPQYVXXXXXXXXXXXXXXKSEDMMKGANRLRATFDIFYEEEILNL 496
           +AFYDF +R G A  P YV              K+E++++G  RLR + DI +EEE    
Sbjct: 99  QAFYDFNERRGKAGDPFYVLLCCWLAAVGGGLLKTEEILEGVARLRLSNDIEFEEETFLD 158

Query: 497 LMDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDAELLICMLQGIFP 673
           +M  A +KR K K+  P +P EARAEKALEAI  CC G+  +++ED +LL  ML  IFP
Sbjct: 159 MMKTAKEKRAKLKAPAPQIPMEARAEKALEAIYVCCFGQDMMEDEDVKLLCKMLNAIFP 217


>tr|Q65X91|Q65X91_ORYSJ Os05g0526200 protein OS=Oryza sativa subsp.
           japonica GN=OJ1593_C11.11 PE=2 SV=1
          Length = 271

 Score =  139 bits (349), Expect = 2e-31
 Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
 Frame = +2

Query: 140 AYIEKS-DAVYDFFNKVRGSLPVIGLFFRILSDDGGIGSDRIQFKEFCTRVFRNFSLETT 316
           AY+E + ++      ++ G+LPV+GL  RILSD+GG+G D I F EF  RV +  ++  +
Sbjct: 39  AYMEPNPNSPSSIAGRLIGALPVVGLVARILSDEGGVGGDMIDFAEFRRRVSKKCTVMDS 98

Query: 317 RAFYDFEDRHGSAARPQYVXXXXXXXXXXXXXXKSEDMMKGANRLRATFDIFYEEEILNL 496
           +AFYDF +R G A  P YV              K+E++++G  RLR + DI +EEE    
Sbjct: 99  QAFYDFNERRGKAGDPFYVLLCCWLAAVGGGLLKTEEILEGVARLRLSNDIEFEEETFLD 158

Query: 497 LMDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDAELLICMLQGIFP 673
           +M  A +KR K K+  P +P EARAEKALEAI  CC G+  +++ D +LL  ML  +FP
Sbjct: 159 MMKTAKEKRAKLKAPAPQIPMEARAEKALEAIYVCCFGQDMVEDVDVKLLCKMLNAVFP 217


>tr|B6TZN2|B6TZN2_MAIZE Calcium homeostasis regulator CHoR1 OS=Zea
           mays PE=2 SV=1
          Length = 269

 Score =  134 bits (337), Expect = 5e-30
 Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 1/188 (0%)
 Frame = +2

Query: 113 KRKPFSCPRAYIEKS-DAVYDFFNKVRGSLPVIGLFFRILSDDGGIGSDRIQFKEFCTRV 289
           +R+ +    AY+E + ++      ++ G+LP++GL  RIL+D+GG+G D I F EF  RV
Sbjct: 29  RRRRYRAVVAYMEPNPNSPAAIAGRLVGALPIVGLVARILNDEGGVGGDIIDFAEFRRRV 88

Query: 290 FRNFSLETTRAFYDFEDRHGSAARPQYVXXXXXXXXXXXXXXKSEDMMKGANRLRATFDI 469
            +  ++  ++AFYDF  R G    P YV              K+E++++G  RLR + DI
Sbjct: 89  SKKCTVMDSKAFYDFNQRRGKPGDPFYVLLCCWLAAIGAGLLKTEEILEGVARLRISNDI 148

Query: 470 FYEEEILNLLMDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDAELLI 649
            +EEE    +M  A +KR K K+  P +P E RAEKALEAI  CC G+  +++ED +LL 
Sbjct: 149 EFEEETFIDMMRAAKEKRAKLKAPAPQIPMETRAEKALEAIYVCCFGQDMVEDEDEKLLR 208

Query: 650 CMLQGIFP 673
            +L  +FP
Sbjct: 209 AILNAVFP 216


>tr|B4FSG1|B4FSG1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 269

 Score =  134 bits (337), Expect = 5e-30
 Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 1/188 (0%)
 Frame = +2

Query: 113 KRKPFSCPRAYIEKS-DAVYDFFNKVRGSLPVIGLFFRILSDDGGIGSDRIQFKEFCTRV 289
           +R+ +    AY+E + ++      ++ G+LP++GL  RIL+D+GG+G D I F EF  RV
Sbjct: 29  RRRRYRAVVAYMEPNPNSPAAIAGRLVGALPIVGLVARILNDEGGVGGDIIDFAEFRRRV 88

Query: 290 FRNFSLETTRAFYDFEDRHGSAARPQYVXXXXXXXXXXXXXXKSEDMMKGANRLRATFDI 469
            +  ++  ++AFYDF  R G    P YV              K+E++++G  RLR + DI
Sbjct: 89  SKKCTVMDSKAFYDFNQRRGKPGDPFYVLLCCWLAAIGAGLLKTEEILEGVARLRISNDI 148

Query: 470 FYEEEILNLLMDEAMKKRQKSKSAVPFVPYEARAEKALEAICKCCIGKQDIDEEDAELLI 649
            +EEE    +M  A +KR K K+  P +P E RAEKALEAI  CC G+  +++ED +LL 
Sbjct: 149 EFEEETFIDMMRAAKEKRAKLKAPAPQIPMETRAEKALEAIYVCCFGQDMVEDEDEKLLR 208

Query: 650 CMLQGIFP 673
            +L  +FP
Sbjct: 209 AILNAVFP 216