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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959976
Clone id TST39A01NGRL0006_C10
Library
Length 639
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_C10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ACTGTACTAAGGCCTCATATAGGCCAATAACTATTGCAAAAGTTTATGTGTATGCCACTC
CCACTGACGATCATCCATGGTAAGCTTCTTCTAATAAGTGGGCCGGTTCGTGTGTTATTG
AGAGCATCCTGAGGCCGGGCAGAGGTAGCCTACTACCATTAGAACAATGAAGAGGCTCAC
AGGTTCATGCGACCTCGCCCGCATTTTGACAAGGCCACGACACCTTTACTGGCAAAGCAG
GCAGATGGTCACCACTTGTTATGATGTAGAGATGGCCAGAAATGAGCAACAGGAAAACCA
CAGGCTTGCAAACCCTCAGTTTAAGAACTTTGCTAGCACGAACACGTCCGCGCTTGGGCA
TCCGATTGGTGTGGGTAATTCGAATGTTGGGGATGGTCATATTCAATCAAACAGCGTAGC
AAGCAGCTTGGCTAAGTTCGCTGACACAAAAGCTGAGAGTTCTAGAGCCGTTAAACCTGA
CTTGCCACCAGAAAAACGAAAAATCCGTCCTGATGAGTATAATGTACAGAAAGCACGAAT
ACATGCAAACTTGTGGCAACAGGAGATCAAGAAACATGTGGGAGAGTCGACTTCTATTGA
TGGAGATGGAGAGTCTGGATTGAGGGGAGACTCTGTTTG
■■Homology search results ■■ -
sp_hit_id O75592
Definition sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens
Align length 45
Score (bit) 32.3
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959976|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_C10, 5'
         (639 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP...    32   2.1  
sp|Q63805|A1AG3_MOUSE Alpha-1-acid glycoprotein 3 OS=Mus musculu...    32   2.8  
sp|Q54HS1|Y9416_DICDI Putative uncharacterized protein DDB_G0289...    31   6.2  
sp|Q60929|MEF2A_MOUSE Myocyte-specific enhancer factor 2A OS=Mus...    31   6.2  
sp|Q8BR86|KIRR3_MOUSE Kin of IRRE-like protein 3 OS=Mus musculus...    31   6.2  
sp|Q8IZU9|KIRR3_HUMAN Kin of IRRE-like protein 3 OS=Homo sapiens...    31   6.2  
sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogast...    30   8.1  
sp|O25424|ASPG_HELPY Probable L-asparaginase OS=Helicobacter pyl...    30   8.1  

>sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2
            OS=Homo sapiens GN=MYCBP2 PE=1 SV=3
          Length = 4640

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +2

Query: 347  SALGHPIGVGNSNVGDGHIQSNSVASSLAKFADTKAESSRAVKPD 481
            SA G   G+GNS    G+I ++S  +S +  ++  ++ SR++KPD
Sbjct: 2663 SAQGFDYGLGNSKGDRGNISTSSKPASTSGKSELSSKHSRSLKPD 2707


>sp|Q63805|A1AG3_MOUSE Alpha-1-acid glycoprotein 3 OS=Mus musculus
           GN=Orm3 PE=2 SV=1
          Length = 206

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 15/155 (9%)
 Frame = +2

Query: 149 PTTIRTMKRLTGSCDLARILTRPRHLYWQSRQMVTTCY----------DVEMARNEQQEN 298
           P T  T+  L+G   L  +       Y Q  Q V T +           +E+     +++
Sbjct: 30  PITNETLSWLSGKWFLIAVADSDPD-YRQEIQKVQTIFFYLTLNKINDTMELREYHTKDD 88

Query: 299 HRLANPQFKNFASTNTSALGHPIGVGNSNVGDGHIQSNSVASSLAKFADTKAESSRAV-- 472
           H + N     F   N +   +   V N +    H++      ++  F D K E  R +  
Sbjct: 89  HCVYNSNLLGFQRENGTLFKYEGEVENPS----HLRVLEKHGAIMLFFDLKDEKKRGLSL 144

Query: 473 ---KPDLPPEKRKIRPDEYNVQKARIHANLWQQEI 568
              +PD+PPE R++       QKA  H  + + EI
Sbjct: 145 SARRPDIPPELREV------FQKAVTHVGMDESEI 173


>sp|Q54HS1|Y9416_DICDI Putative uncharacterized protein DDB_G0289263
           OS=Dictyostelium discoideum GN=DDB_G0289263 PE=4 SV=1
          Length = 815

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 281 NEQQENHRLANPQFK-NFASTNTSALGHPIGVGNSNVGDGHIQSNS 415
           N+   NH   NP F  N  + N++ +GH     N+NV + +I +N+
Sbjct: 236 NQLYNNHNNGNPNFYINNNNNNSNNIGHNNNNNNNNVNNNNISNNN 281


>sp|Q60929|MEF2A_MOUSE Myocyte-specific enhancer factor 2A OS=Mus
           musculus GN=Mef2a PE=1 SV=2
          Length = 498

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
 Frame = +2

Query: 341 NTSALGHPIGVGNSNVGDGHIQS--------NSVASSLAKFADTKAE--------SSRAV 472
           +T+ L  P G GNS VG+G + S        N+ A+SL K   TK+            + 
Sbjct: 208 STTDLTVPNGAGNSPVGNGFVNSRASPNLIGNTGANSLGKVMPTKSPPPPGGGSLGMNSR 267

Query: 473 KPDL----PPEKRKIRPDEYNVQKARIHA 547
           KPDL    PP  + + P     ++  ++A
Sbjct: 268 KPDLRVVIPPSSKGMMPPLSEEEELELNA 296


>sp|Q8BR86|KIRR3_MOUSE Kin of IRRE-like protein 3 OS=Mus musculus
           GN=Kirrel3 PE=2 SV=1
          Length = 778

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 453 LRVLEPLNLTCHQKNEKSVLMSIMYRKHE 539
           LR  +PLNLTCH  N K     I  RK E
Sbjct: 160 LRAGDPLNLTCHADNAKPAASIIWLRKGE 188


>sp|Q8IZU9|KIRR3_HUMAN Kin of IRRE-like protein 3 OS=Homo sapiens
           GN=KIRREL3 PE=1 SV=1
          Length = 778

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 453 LRVLEPLNLTCHQKNEKSVLMSIMYRKHE 539
           LR  +PLNLTCH  N K     I  RK E
Sbjct: 160 LRAGDPLNLTCHADNAKPAASIIWLRKGE 188


>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster
            GN=spen PE=1 SV=2
          Length = 5560

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
 Frame = +2

Query: 182  GSCDLARILTRPRHLYWQSRQMVTTCYDVEMARNEQQENHRLANPQFKNFASTNTSALGH 361
            GSC  +  L  P   YW+S                QQ NH+  + Q    +S+NT  +  
Sbjct: 1374 GSCSGSTFLPSPSSRYWRSSSH----------HQNQQNNHQQQSQQLHGSSSSNTCLMAS 1423

Query: 362  PIGVG--NSNVGDGHIQSNSVASS 427
            P      +SN  D  +   +   S
Sbjct: 1424 PARPRSLSSNSSDSDVPGQNAGGS 1447


>sp|O25424|ASPG_HELPY Probable L-asparaginase OS=Helicobacter pylori
           GN=ansA PE=3 SV=1
          Length = 330

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +2

Query: 332 ASTNTSALGHPI-GVGNSNVGDGHIQSNSVASSLAK--FADTKAESSRAVKPDLPPEKRK 502
           AS N+ A G  I GVGN NV  G +++   AS +       ++  S      ++  +K  
Sbjct: 237 ASLNSHAKGVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVNSGEITSGEI-DDKAF 295

Query: 503 IRPDEYNVQKARI 541
           I  D  N QKAR+
Sbjct: 296 ITSDNLNPQKARV 308
tr_hit_id Q4CM22
Definition tr|Q4CM22|Q4CM22_TRYCR Mucin-associated surface protein (MASP), putative OS=Trypanosoma cruzi
Align length 106
Score (bit) 37.4
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959976|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_C10, 5'
         (639 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4CM22|Q4CM22_TRYCR Mucin-associated surface protein (MASP), ...    37   0.77 
tr|B4MRB3|B4MRB3_DROWI GK15804 OS=Drosophila willistoni GN=GK158...    36   2.3  
tr|Q1JSB3|Q1JSB3_TOXGO Putative uncharacterized protein OS=Toxop...    35   3.8  
tr|B6KC50|B6KC50_TOXGO Putative uncharacterized protein OS=Toxop...    35   3.9  
tr|Q7JLC3|Q7JLC3_CAEEL Protein C52E4.6a, confirmed by transcript...    35   5.0  
tr|A8X6M5|A8X6M5_CAEBR Putative uncharacterized protein OS=Caeno...    35   5.0  
tr|A5K0D5|A5K0D5_PLAVI Putative uncharacterized protein OS=Plasm...    35   5.0  
tr|Q1YPE8|Q1YPE8_9GAMM Putative uncharacterized protein OS=gamma...    35   5.1  
tr|A4FDS9|A4FDS9_SACEN Putative Glycopeptide antibiotics resista...    34   6.5  
tr|Q8W398|Q8W398_ORYSA Putative mucin OS=Oryza sativa GN=OSJNBa0...    34   6.5  
tr|Q10KL7|Q10KL7_ORYSJ Os03g0379400 protein OS=Oryza sativa subs...    34   6.5  
tr|A3AII1|A3AII1_ORYSJ Putative uncharacterized protein OS=Oryza...    34   6.5  
tr|A2XHC8|A2XHC8_ORYSI Putative uncharacterized protein OS=Oryza...    34   6.5  
tr|B4IXF0|B4IXF0_DROGR GH15227 OS=Drosophila grimshawi GN=GH1522...    34   6.5  
tr|A7APE4|A7APE4_BABBO DNA repair protein rhp16, putative OS=Bab...    34   6.5  
tr|A5DYL6|A5DYL6_LODEL Putative uncharacterized protein OS=Lodde...    34   6.5  
tr|B1BB88|B1BB88_CLOBO Putative phage related transcriptional re...    34   8.6  
tr|B6T3M1|B6T3M1_MAIZE Putative uncharacterized protein OS=Zea m...    34   8.6  
tr|B4FTX8|B4FTX8_MAIZE Putative uncharacterized protein OS=Zea m...    34   8.6  
tr|A4HHB5|A4HHB5_LEIBR Putative uncharacterized protein OS=Leish...    34   8.6  
tr|A8PR31|A8PR31_MALGO Putative uncharacterized protein OS=Malas...    34   8.6  

>tr|Q4CM22|Q4CM22_TRYCR Mucin-associated surface protein (MASP),
           putative OS=Trypanosoma cruzi GN=Tc00.1047053457979.10
           PE=4 SV=1
          Length = 350

 Score = 37.4 bits (85), Expect = 0.77
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
 Frame = +2

Query: 332 ASTNTSALGHPIGVGNSNVGDGHIQSNSVASSLAKFADTKAESSRAVKPDLPP--EKRKI 505
           A++N +++G P G  NSN G G +       +L K A  + E     K   PP  +  K 
Sbjct: 160 ANSNAASVGLPAGSENSNTGCGEVSDCGSQGNLEK-ATVEKEDFTVSKAQKPPATQNTKS 218

Query: 506 RPDEYNVQKA---RIHANLWQQEIKKHVGESTSIDGDGESGLRGDS 634
           + +E N  +A          QQEIK  V ES S   D  + +   S
Sbjct: 219 KDNEENPAEASSTESENTEPQQEIKTPVDESDSTSTDASTAVAARS 264


>tr|B4MRB3|B4MRB3_DROWI GK15804 OS=Drosophila willistoni GN=GK15804
           PE=4 SV=1
          Length = 532

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
 Frame = +2

Query: 362 PIGVGNSNVGDGHIQSNSVA-SSLAKFADTKAES-------SRAVKPDLPPEKRKIRPDE 517
           P+     +VG  HIQ N V    L KF D   +        S+    DLPPEK K+  D 
Sbjct: 268 PVSYNMISVGGLHIQPNKVLPEDLQKFLDGATDGAIYFSLGSQVRSADLPPEKLKVFLDV 327

Query: 518 YNVQKARIHANLWQQEIKK 574
           +   K R+   LW+ E +K
Sbjct: 328 FGSLKQRV---LWKFEDEK 343


>tr|Q1JSB3|Q1JSB3_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii RH GN=TgIb.2400 PE=4 SV=1
          Length = 4189

 Score = 35.0 bits (79), Expect = 3.8
 Identities = 29/107 (27%), Positives = 45/107 (42%)
 Frame = +2

Query: 317  QFKNFASTNTSALGHPIGVGNSNVGDGHIQSNSVASSLAKFADTKAESSRAVKPDLPPEK 496
            Q   F    TS     +GV  S +G  H    +  SSLA+   T+    R   P+ P  +
Sbjct: 3987 QGDGFVLRETSQELSALGVVTSAIGCSHA---APGSSLAEAGQTQKTEERVELPEKPSRE 4043

Query: 497  RKIRPDEYNVQKARIHANLWQQEIKKHVGESTSIDGDGESGLRGDSV 637
               + +E ++Q     A     E ++   E  S + +GE+ L  DSV
Sbjct: 4044 SAAKVEEVDMQHVGGEAGTKTLEEREQSVEIQSEEQEGEAALLNDSV 4090


>tr|B6KC50|B6KC50_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_062840 PE=4 SV=1
          Length = 178

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -1

Query: 630 SPLNPDSPSPSIEVDSPTCFLISCCHKFACIRAFCTLYSSGRIFRFSGGKSGLTALELSA 451
           SP  P  P P   + S +   ++CC  F+ + +   L+SS   F F+G  SGL+ L  S+
Sbjct: 86  SPAPPSHPLPCRWLSSVS---LACCSFFSFVCSTHRLFSSSCCFSFTGSPSGLSVLSTSS 142

Query: 450 FVSANL 433
               +L
Sbjct: 143 LALPSL 148


>tr|Q7JLC3|Q7JLC3_CAEEL Protein C52E4.6a, confirmed by transcript
           evidence OS=Caenorhabditis elegans GN=cyl-1 PE=2 SV=1
          Length = 480

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +2

Query: 401 IQSNSVASSLAKFADTKAESSRAVKPDLPPEKRKIRPDEYNVQKARIHANLWQQEIKKHV 580
           +++  +A +LAK A    +S+  V   +  + RK+ PD  N  K R  A+  ++E  +H 
Sbjct: 357 VKAKEIAENLAKMAPDGEKSTSTVT--IGKDSRKVSPDRKNGTKDRGEADRGKKEKDRHR 414

Query: 581 GESTSIDGDGE 613
             S   DG G+
Sbjct: 415 RRSNDRDGRGD 425


>tr|A8X6M5|A8X6M5_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG08470 PE=4 SV=1
          Length = 892

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = +2

Query: 374 GNSNVGDGHIQSNSVASSLAKFADTKAESSRAVKPDLPPEKRKIRPDEYNVQKARI-HAN 550
           G+ N  DG  + + VAS     +D  ++ S     D      +   DE+   + RI H++
Sbjct: 615 GSGNGSDGIEEEDEVASDEGNDSDESSDESSEDDVDSDDVSDEASTDEHKADRERIFHSD 674

Query: 551 LWQQEIK-----KHVGESTSIDGDGESGL 622
           +W+Q  K     +  G   S  G+G  G+
Sbjct: 675 IWEQYRKSRCYDERAGSKQSGSGNGSDGI 703


>tr|A5K0D5|A5K0D5_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_084210 PE=4 SV=1
          Length = 805

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +2

Query: 284 EQQENHRLANPQFKNFASTNTSALGHPIGVGNSNVGDGHIQSNSVASSLAKFADTKA 454
           +++ +  L+   + +F S+  S     +GVG S+VG  H+ SN VAS+ A    +++
Sbjct: 232 KRKYDKNLSEDSWPHFGSSPRSLSSPSLGVGGSHVGGNHLASNCVASNSANAGSSQS 288


>tr|Q1YPE8|Q1YPE8_9GAMM Putative uncharacterized protein OS=gamma
           proteobacterium HTCC2207 GN=GB2207_02940 PE=3 SV=1
          Length = 504

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
 Frame = -1

Query: 573 FLISCCHKFACIRAFCTLYSS------GRIFRFSGGKSGLTALELSAFVSAN-LAKLLAT 415
           F ++  ++F  +RAFC    S        +F    G S LT L   A   A  LAK+   
Sbjct: 86  FALALGYRFTLVRAFCAFIRSIHELFWALLFMQIAGLSSLTGLLAIAIPYAGTLAKIYGE 145

Query: 414 LFD*I*PSPTFELPTPIGCPSADVF 340
           LF+ + P+P   LP     P ++ F
Sbjct: 146 LFEEVDPAPANNLPVNKRRPLSEFF 170


>tr|A4FDS9|A4FDS9_SACEN Putative Glycopeptide antibiotics resistance
           protein OS=Saccharopolyspora erythraea (strain NRRL
           23338) GN=SACE_2926 PE=4 SV=1
          Length = 376

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +3

Query: 12  ASYRPITIAKVYVYA---TPTDDHPW*ASSNKWAGSCVIESILRPGRGSLLPLEQ*RGSQ 182
           A + P+T+    V+      T DH     S + AG CV+++ +RP      P E  RG+Q
Sbjct: 309 ALWLPLTLIWAAVHGWGVLSTPDHR--GLSGRLAGLCVVDARIRPRTVQSEPREAHRGAQ 366

Query: 183 VHATS 197
           VHA+S
Sbjct: 367 VHASS 371


>tr|Q8W398|Q8W398_ORYSA Putative mucin OS=Oryza sativa
           GN=OSJNBa0013O08.2 PE=4 SV=1
          Length = 309

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 497 RKIRPDEYNVQKARIHANLWQQEIKKHVGESTSIDGDG 610
           +K + DEY  +K R+HA LW +EI+K   E   + G G
Sbjct: 127 KKAQADEYRARKQRVHAALWVKEIEKM--EEARLGGGG 162