| DK959980 |
| Clone id |
TST39A01NGRL0006_C14 |
| Library |
TST39 |
| Length |
616 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_C14. 5' end sequence. |
| Accession |
DK959980 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL1340Contig1 |
| Sequence |
CAAAGAGAATGCGTAAATTTGTACGCACACCTATGAGTGCCAGCGGTCGGAACCTTATCA CCGACTTTGATTAAGCGCATGAAATCAACAAACAGCTGGATCTCATGGGCTATCATATAG GTATAAGGTTGATTGACGATTTCCTCTCAAAATCAAATGTTACAAGATGTTCAGAGTTTA AGGAGACAGCAGAAGTAATTGCCAAGGTGGGTTTCAAAATGTTTCTGGGAGTAACTGCTA CGGTCGCAAACTGGGATGCTGAGGGCACCGAATGTAGTCTAACTCTGGATGATAACCCCC TGGTTGATTTTGTAGAGCTGCCTGAGACTTGCCAGGGTCTCCACTATTGCAATGTGTTGT GTGGGGTTATCAGAGGAGCTCTTGAAATGGTAAACATGCGAACAGAGGTCAGGTGGGTCC GAGATGTGCTTCGTGGAGACGATGCTTATGAAATGCGCCTGAAACTTCTGAAGCAGGTGG CAGAAGAGTACCCCTACAAAGACGATGAATAGAAGTGCCACCTAAAAAGGTTTTAAACAG TTAGTTTCTGTGATAGATGTAACATTCTTTTGGGCATCGCTCTGAAAGGTTGATTTTCTG GATATAGCTGCTGATG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q5ZI57 |
| Definition |
sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus |
| Align length |
147 |
| Score (bit) |
176.0 |
| E-value |
9.0e-44 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959980|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_C14, 5' (616 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subun... 176 9e-44 sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit... 175 2e-43 sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subun... 175 2e-43 sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subun... 173 6e-43 sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subun... 157 4e-38 sp|Q9P6P5|BET3_SCHPO Transport protein particle subunit bet3 OS=... 149 1e-35 sp|P36149|BET3_YEAST Transport protein particle 22 kDa subunit O... 134 3e-31 sp|Q4KL14|TPC3L_MOUSE Trafficking protein particle complex subun... 133 6e-31 sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subun... 132 1e-30 sp|Q61IU9|TPPC3_CAEBR Probable trafficking protein particle comp... 93 1e-18 sp|P34605|TPPC3_CAEEL Probable trafficking protein particle comp... 92 2e-18 sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subun... 39 0.016 sp|P48974|V1BR_RAT Vasopressin V1b receptor OS=Rattus norvegicus... 32 2.0 sp|Q8CDU4|FXL13_MOUSE F-box/LRR-repeat protein 13 OS=Mus musculu... 30 7.5
>sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1 Length = 180
Score = 176 bits (446), Expect = 9e-44 Identities = 79/147 (53%), Positives = 113/147 (76%) Frame = +3
Query: 54 LITDFD*AHEINKQLDLMGYHIGIRLIDDFLSKSNVTRCSEFKETAEVIAKVGFKMFLGV 233 L D++ ++NKQLD MGY+IG+RLI+DFL++SNV RC +F+ETA+VIAK+ FKM+LG+ Sbjct: 30 LCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKIAFKMYLGI 89
Query: 234 TATVANWDAEGTECSLTLDDNPLVDFVELPETCQGLHYCNVLCGVIRGALEMVNMRTEVR 413 T ++ NW G E SL L++NPLVDFVELP+ L Y N+LCGV+RGALEMV M +V+ Sbjct: 90 TPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVDVK 149
Query: 414 WVRDVLRGDDAYEMRLKLLKQVAEEYP 494 +V+D L+GD E+R+K ++++ + P Sbjct: 150 FVQDTLKGDSVTEIRMKFIRRIEDNLP 176
>sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1 Length = 180
Score = 175 bits (443), Expect = 2e-43 Identities = 79/147 (53%), Positives = 112/147 (76%) Frame = +3
Query: 54 LITDFD*AHEINKQLDLMGYHIGIRLIDDFLSKSNVTRCSEFKETAEVIAKVGFKMFLGV 233 L D++ ++NKQLD MGY+IG+RLI+DFL++SNV RC +F+ETA+VIAKV FKM+LG+ Sbjct: 30 LCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGI 89
Query: 234 TATVANWDAEGTECSLTLDDNPLVDFVELPETCQGLHYCNVLCGVIRGALEMVNMRTEVR 413 T ++ NW G E SL L++NPLVDFVELP+ L Y N+LCGV+RGALEMV M E + Sbjct: 90 TPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAK 149
Query: 414 WVRDVLRGDDAYEMRLKLLKQVAEEYP 494 +V+D L+GD E+R++ ++++ + P Sbjct: 150 FVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1 Length = 180
Score = 175 bits (443), Expect = 2e-43 Identities = 79/147 (53%), Positives = 112/147 (76%) Frame = +3
Query: 54 LITDFD*AHEINKQLDLMGYHIGIRLIDDFLSKSNVTRCSEFKETAEVIAKVGFKMFLGV 233 L D++ ++NKQLD MGY+IG+RLI+DFL++SNV RC +F+ETA+VIAKV FKM+LG+ Sbjct: 30 LCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGI 89
Query: 234 TATVANWDAEGTECSLTLDDNPLVDFVELPETCQGLHYCNVLCGVIRGALEMVNMRTEVR 413 T ++ NW G E SL L++NPLVDFVELP+ L Y N+LCGV+RGALEMV M E + Sbjct: 90 TPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAK 149
Query: 414 WVRDVLRGDDAYEMRLKLLKQVAEEYP 494 +V+D L+GD E+R++ ++++ + P Sbjct: 150 FVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1 Length = 180
Score = 173 bits (439), Expect = 6e-43 Identities = 78/147 (53%), Positives = 112/147 (76%) Frame = +3
Query: 54 LITDFD*AHEINKQLDLMGYHIGIRLIDDFLSKSNVTRCSEFKETAEVIAKVGFKMFLGV 233 L D++ ++NKQLD MG++IG+RLI+DFL++SNV RC +F+ETA+VIAKV FKM+LG+ Sbjct: 30 LCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGI 89
Query: 234 TATVANWDAEGTECSLTLDDNPLVDFVELPETCQGLHYCNVLCGVIRGALEMVNMRTEVR 413 T ++ NW G E SL L++NPLVDFVELP+ L Y N+LCGV+RGALEMV M E + Sbjct: 90 TPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAK 149
Query: 414 WVRDVLRGDDAYEMRLKLLKQVAEEYP 494 +V+D L+GD E+R++ ++++ + P Sbjct: 150 FVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=1 Length = 186
Score = 157 bits (397), Expect = 4e-38 Identities = 78/148 (52%), Positives = 111/148 (75%), Gaps = 1/148 (0%) Frame = +3
Query: 54 LITDFD*AHEINKQLDLMGYHIGIRLIDDFLSKSNVTRCSEFKETAEVIAKVGFKMFLGV 233 LI D++ ++N +L+ MGY+IGIRLI++FL+KS + RCS+F ETAEVIAKVGFKMFLGV Sbjct: 35 LIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKSGIGRCSDFIETAEVIAKVGFKMFLGV 94
Query: 234 TATVANWDAEGTECSLTLDDNPLVDFVELPETCQ-GLHYCNVLCGVIRGALEMVNMRTEV 410 A V +WDA+ E LT++DNPL+DFVELP+ + L+Y N+LCGV+RGALEMV M+ + Sbjct: 95 NAHVGDWDADRKEFHLTIEDNPLIDFVELPDQYKHKLYYSNILCGVMRGALEMVQMKVKC 154
Query: 411 RWVRDVLRGDDAYEMRLKLLKQVAEEYP 494 +V+ L D E+++ L + +++ P Sbjct: 155 TFVKCTLSDDSTSEIKVVLEEVLSDMIP 182
>sp|Q9P6P5|BET3_SCHPO Transport protein particle subunit bet3 OS=Schizosaccharomyces pombe GN=bet3 PE=2 SV=1 Length = 183
Score = 149 bits (375), Expect = 1e-35 Identities = 73/143 (51%), Positives = 105/143 (73%), Gaps = 1/143 (0%) Frame = +3
Query: 81 EINKQLDLMGYHIGIRLIDDFLSKSNVTRCSEFKETAEVIAKVGFKMFLGVTATVANWDA 260 ++N++LD MGY+IGIRLI+DFL+K+ RC++F+ET E +AKVGFK+FL + +++ Sbjct: 41 KVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFRETGETVAKVGFKVFLNFSPIISSVSD 100
Query: 261 EGTECSLTLDDNPLVDFVELP-ETCQGLHYCNVLCGVIRGALEMVNMRTEVRWVRDVLRG 437 +G LTLDDNPL +FVELP + Q L Y N+LCGVIRGALEM+ M + ++RD+LRG Sbjct: 101 DGNTFVLTLDDNPLAEFVELPADARQKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRG 160
Query: 438 DDAYEMRLKLLKQVAEEYPYKDD 506 D+ E+R+ L + + EE P D+ Sbjct: 161 DEHTEIRVHLKRILKEEIPPGDE 183
>sp|P36149|BET3_YEAST Transport protein particle 22 kDa subunit OS=Saccharomyces cerevisiae GN=BET3 PE=1 SV=1 Length = 193
Score = 134 bits (338), Expect = 3e-31 Identities = 64/144 (44%), Positives = 98/144 (68%), Gaps = 1/144 (0%) Frame = +3
Query: 78 HEINKQLDLMGYHIGIRLIDDFLSKSNVTRCSEFKETAEVIAKVGFKMFLGVTATVANWD 257 +++N L MGY+IG RLI+DFL+++ + RC +T+EV++K FK+FL +T + NW Sbjct: 50 NKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWS 109
Query: 258 AEGTECSLTLDDNPLVDFVELP-ETCQGLHYCNVLCGVIRGALEMVNMRTEVRWVRDVLR 434 SL LD+NPL DFVELP + + L Y N+LCGV++G+LEMV + +V +V D+LR Sbjct: 110 HNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILR 169
Query: 435 GDDAYEMRLKLLKQVAEEYPYKDD 506 GD E+++KL + + +E P +D Sbjct: 170 GDSQTEIKVKLNRILKDEIPIGED 193
>sp|Q4KL14|TPC3L_MOUSE Trafficking protein particle complex subunit 3-like protein OS=Mus musculus GN=Bet3l PE=2 SV=1 Length = 181
Score = 133 bits (335), Expect = 6e-31 Identities = 67/146 (45%), Positives = 98/146 (67%), Gaps = 1/146 (0%) Frame = +3
Query: 54 LITDFD*AHEINKQLDLMGYHIGIRLIDDFLSKSNVTRCSEFKETAEVIAKVGFKMFLGV 233 L D++ ++NK LD MGY+IG RL++DFL++S V RC + E +IA+V FKM+LG+ Sbjct: 30 LCKDYEKDEDVNKYLDKMGYNIGTRLVEDFLARSCVRRCHSYSEIINIIAQVAFKMYLGI 89
Query: 234 TATVANWDAEGTECSLTLDDNPLVDFV-ELPETCQGLHYCNVLCGVIRGALEMVNMRTEV 410 T +V ++ E SL L NPL +FV ELP L YCN+LCG+IRGALEMV++ V Sbjct: 90 TPSVTCHNSSRNEFSLILHKNPLAEFVEELPAGRSALCYCNLLCGIIRGALEMVHLAANV 149
Query: 411 RWVRDVLRGDDAYEMRLKLLKQVAEE 488 +++D L+GD E+ + LK++ E+ Sbjct: 150 TFLQDRLKGDSVTEIGITFLKKLDEK 175
>sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subunit 3-like protein OS=Homo sapiens GN=BET3L PE=2 SV=1 Length = 181
Score = 132 bits (332), Expect = 1e-30 Identities = 67/146 (45%), Positives = 100/146 (68%), Gaps = 1/146 (0%) Frame = +3
Query: 54 LITDFD*AHEINKQLDLMGYHIGIRLIDDFLSKSNVTRCSEFKETAEVIAKVGFKMFLGV 233 L D++ ++N+ LD MGY IG RL++DFL++S V RC + E ++IA+V FKM+LG+ Sbjct: 30 LCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRCHSYSEIIDIIAQVAFKMYLGI 89
Query: 234 TATVANWDAEGTECSLTLDDNPLVDFV-ELPETCQGLHYCNVLCGVIRGALEMVNMRTEV 410 T +V ++ E SL L+ NPLV+FV ELP L YCN+LCG+IRGALEMV++ +V Sbjct: 90 TPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAADV 149
Query: 411 RWVRDVLRGDDAYEMRLKLLKQVAEE 488 +++D L+GD E+ + LK+ E+ Sbjct: 150 TFLQDRLKGDSVTEIGITFLKKRDEK 175
>sp|Q61IU9|TPPC3_CAEBR Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1 Length = 181
Score = 92.8 bits (229), Expect = 1e-18 Identities = 45/119 (37%), Positives = 76/119 (63%), Gaps = 3/119 (2%) Frame = +3
Query: 54 LITDFD*AHEINKQLDLMGYHIGIRLIDDFLSKS-NVTRCSEFKETAEVIAKVGFKMFLG 230 ++ D++ ++ QLD MG+++G RL DDFL+K+ NV RC + ++ A+V+ + +LG Sbjct: 31 MLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQIADVLCRNAIPCYLG 90
Query: 231 VTATVANWDAEGTECSLTLDDNPLVDFVELPE--TCQGLHYCNVLCGVIRGALEMVNMR 401 V+AT ++W + E +TL+ NPL + V++P GL Y ++ G IRGALE V+ + Sbjct: 91 VSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAGLSYSQMIAGAIRGALEAVHFK 149
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9NRG6 |
| Definition |
tr|A9NRG6|A9NRG6_PICSI Putative uncharacterized protein OS=Picea sitchensis |
| Align length |
154 |
| Score (bit) |
269.0 |
| E-value |
1.0e-70 |
| Report |
 |