DK960002 |
Clone id |
TST39A01NGRL0006_D12 |
Library |
TST39 |
Length |
679 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_D12. 5' end sequence. |
Accession |
DK960002 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL43Contig1 |
Sequence |
GGTGACTCTTTTCTAAAACCATCAGTAATAGAATCCAAAGTGCTCCCTGTTCAGGAAGGT GGAGAGGTACGTAATCACTCATCGCTCATTCCAGAGCAGCTATGCAGCTCAGTCAACAGG AGTGATTACAACAAGGATGACTTTCAAGTATCGTATGAGGCAGCCAAGTTTTTCATAATT AAGTCGTATAGCGAAGATGATGTGCACAAAAGTATTAAATACAGTGTGTGGTCAAGTACG CCAAATGGAAACAAACGATTGGACGAAGCTTACAGGAAGGCTCAGGAGAAATCAGAGGCA CCTTCAACCTTGTGTCCGGTCTTCTTCTTTTTCTCGGTCAATTGCAGTGGCCAATTTTGC GGGGTGGCTGAGATGGTTGGGCCTGTTGACTTTGGTAAGAACATGGATTTCTGGCTACAA GGGAAGTGGAATGGTTGCTTGCCTGTCAAATGGCACATCATCAAGGATGTGCCTAATGGC CATTTCAGGCACATAATCCTGTCCAATAATGACAATAAGCCTGTGACACACAGTCGTGAC ACTCAAGAGGTGCACTTCCATCAAGGCCTTGAAATGCTGAAAATATTCAAGTTTTTTCCC ACAAGAACATCCTTACTCGACGACTTTGCATTCTACGATGGTCGACAAAGGGGTGTTGCA GGAAAGGAAGTCAAGACAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9BYJ9 |
Definition |
sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens |
Align length |
174 |
Score (bit) |
193.0 |
E-value |
6.0e-49 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7NVV9 |
Definition |
tr|A7NVV9|A7NVV9_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
175 |
Score (bit) |
275.0 |
E-value |
1.0e-72 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960002|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_D12, 5' (679 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7NVV9|A7NVV9_VITVI Chromosome chr5 scaffold_2, whole genome ... 275 1e-72 tr|A5AJP6|A5AJP6_VITVI Putative uncharacterized protein OS=Vitis... 275 1e-72 tr|A7QMM3|A7QMM3_VITVI Chromosome chr19 scaffold_126, whole geno... 274 4e-72 tr|A5ACY6|A5ACY6_VITVI Putative uncharacterized protein OS=Vitis... 274 4e-72 tr|Q5QM96|Q5QM96_ORYSJ cDNA clone:J013046L18, full insert sequen... 271 3e-71 tr|Q5QM95|Q5QM95_ORYSJ Rubisco subunit binding-protein beta subu... 271 3e-71 tr|Q5QM94|Q5QM94_ORYSJ cDNA clone:J013144M15, full insert sequen... 271 3e-71 tr|A2ZWJ5|A2ZWJ5_ORYSJ Putative uncharacterized protein OS=Oryza... 271 3e-71 tr|A2WTS8|A2WTS8_ORYSI Putative uncharacterized protein OS=Oryza... 271 3e-71 tr|B4FF31|B4FF31_MAIZE Putative uncharacterized protein OS=Zea m... 269 1e-70 tr|Q8W311|Q8W311_ORYSA Putative RNA-binding protein OS=Oryza sat... 266 9e-70 tr|Q10CW7|Q10CW7_ORYSJ Os03g0748000 protein OS=Oryza sativa subs... 266 9e-70 tr|B8AJV8|B8AJV8_ORYSI Putative uncharacterized protein OS=Oryza... 266 9e-70 tr|A7P0B6|A7P0B6_VITVI Chromosome chr6 scaffold_3, whole genome ... 263 1e-68 tr|B8AMZ5|B8AMZ5_ORYSI Putative uncharacterized protein OS=Oryza... 261 4e-68 tr|Q10MA6|Q10MA6_ORYSJ Os03g0317000 protein OS=Oryza sativa subs... 260 5e-68 tr|A3AHC9|A3AHC9_ORYSJ Putative uncharacterized protein OS=Oryza... 260 5e-68 tr|Q0WPP4|Q0WPP4_ARATH Putative uncharacterized protein At3g1733... 260 6e-68 tr|Q9LUT8|Q9LUT8_ARATH Arabidopsis thaliana genomic DNA, chromos... 257 4e-67 tr|Q1JPL5|Q1JPL5_ARATH At3g17330 OS=Arabidopsis thaliana PE=2 SV=1 257 4e-67 tr|A8MPR6|A8MPR6_ARATH Uncharacterized protein At3g17330.2 OS=Ar... 257 4e-67 tr|A7Q4I8|A7Q4I8_VITVI Chromosome chr9 scaffold_49, whole genome... 257 4e-67 tr|Q9FPE7|Q9FPE7_ARATH Putative uncharacterized protein At1g7927... 257 5e-67 tr|Q8H8C1|Q8H8C1_ORYSJ Putative RNA-binding protein (Putative un... 257 5e-67 tr|Q10RI4|Q10RI4_ORYSJ Os03g0158500 protein OS=Oryza sativa subs... 257 5e-67 tr|Q10RI3|Q10RI3_ORYSJ YT521-B-like family protein, expressed OS... 257 5e-67 tr|Q10RI2|Q10RI2_ORYSJ YT521-B-like family protein, expressed OS... 257 5e-67 tr|O64526|O64526_ARATH YUP8H12R.13 protein OS=Arabidopsis thalia... 257 5e-67 tr|B8ANU7|B8ANU7_ORYSI Putative uncharacterized protein OS=Oryza... 257 5e-67 tr|A5B5J0|A5B5J0_VITVI Putative uncharacterized protein OS=Vitis... 256 7e-67
>tr|A7NVV9|A7NVV9_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019682001 PE=4 SV=1 Length = 416
Score = 275 bits (704), Expect = 1e-72 Identities = 128/175 (73%), Positives = 144/175 (82%) Frame = +1
Query: 127 YNKDDFQVSYEAAKFFIIKSYSEDDVHKSIKYSVWSSTPNGNKRLDEAYRKAQEKSEAPS 306 YNKDDF V Y AKFF+IKSYSEDDVHKSIKY+VWSSTPNGNK+L+ AY AQ + Sbjct: 65 YNKDDFPVDYVDAKFFVIKSYSEDDVHKSIKYNVWSSTPNGNKKLENAYEDAQRIALGKR 124
Query: 307 TLCPVFFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVKWHIIKDVPNGHF 486 CP+F FFSVN SGQFCGVAEM+GPVDF K+MDFW Q KW+G PVKWHIIKDVPN +F Sbjct: 125 RGCPIFLFFSVNASGQFCGVAEMIGPVDFHKDMDFWQQDKWSGSFPVKWHIIKDVPNTNF 184
Query: 487 RHIILSNNDNKPVTHSRDTQEVHFHQGLEMLKIFKFFPTRTSLLDDFAFYDGRQR 651 RHIIL NN+NKPVT+SRDTQE+ F QGLEMLKIFK T+TSLLDDF +Y+ RQR Sbjct: 185 RHIILENNENKPVTNSRDTQEIRFKQGLEMLKIFKNHTTKTSLLDDFMYYENRQR 239
>tr|A5AJP6|A5AJP6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038412 PE=4 SV=1 Length = 1960
Score = 275 bits (704), Expect = 1e-72 Identities = 128/175 (73%), Positives = 144/175 (82%) Frame = +1
Query: 127 YNKDDFQVSYEAAKFFIIKSYSEDDVHKSIKYSVWSSTPNGNKRLDEAYRKAQEKSEAPS 306 YNKDDF V Y AKFF+IKSYSEDDVHKSIKY+VWSSTPNGNK+L+ AY AQ + Sbjct: 373 YNKDDFPVDYVDAKFFVIKSYSEDDVHKSIKYNVWSSTPNGNKKLENAYEDAQRIALGKR 432
Query: 307 TLCPVFFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVKWHIIKDVPNGHF 486 CP+F FFSVN SGQFCGVAEM+GPVDF K+MDFW Q KW+G PVKWHIIKDVPN +F Sbjct: 433 RGCPIFLFFSVNASGQFCGVAEMIGPVDFHKDMDFWQQDKWSGSFPVKWHIIKDVPNTNF 492
Query: 487 RHIILSNNDNKPVTHSRDTQEVHFHQGLEMLKIFKFFPTRTSLLDDFAFYDGRQR 651 RHIIL NN+NKPVT+SRDTQE+ F QGLEMLKIFK T+TSLLDDF +Y+ RQR Sbjct: 493 RHIILENNENKPVTNSRDTQEIRFKQGLEMLKIFKNHTTKTSLLDDFMYYENRQR 547
>tr|A7QMM3|A7QMM3_VITVI Chromosome chr19 scaffold_126, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002122001 PE=4 SV=1 Length = 269
Score = 274 bits (700), Expect = 4e-72 Identities = 126/192 (65%), Positives = 151/192 (78%) Frame = +1
Query: 100 LCSSVNRSDYNKDDFQVSYEAAKFFIIKSYSEDDVHKSIKYSVWSSTPNGNKRLDEAYRK 279 + S + R YN DF Y+ A FF+IKSYSEDD+HKSIKY+VW+STPNGNKRLD AY++ Sbjct: 50 IASLIRRDQYNLPDFPTKYDHAFFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDGAYQE 109
Query: 280 AQEKSEAPSTLCPVFFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVKWHI 459 A+E+ + CPVF FFSVN SGQFCGVAEM+G VDF KNMDFW Q KWNG PVKWHI Sbjct: 110 AKERMGDRGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGFFPVKWHI 169
Query: 460 IKDVPNGHFRHIILSNNDNKPVTHSRDTQEVHFHQGLEMLKIFKFFPTRTSLLDDFAFYD 639 IKDVPN RHIIL NNDNKPVT+SRDTQEV F QG+E+L IFK + ++TS+LDDF FY+ Sbjct: 170 IKDVPNPQLRHIILENNDNKPVTNSRDTQEVRFPQGIEILNIFKNYVSKTSILDDFDFYE 229
Query: 640 GRQRGVAGKEVK 675 RQ+ + K++K Sbjct: 230 SRQKVMQDKKIK 241
>tr|A5ACY6|A5ACY6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005095 PE=4 SV=1 Length = 592
Score = 274 bits (700), Expect = 4e-72 Identities = 126/192 (65%), Positives = 151/192 (78%) Frame = +1
Query: 100 LCSSVNRSDYNKDDFQVSYEAAKFFIIKSYSEDDVHKSIKYSVWSSTPNGNKRLDEAYRK 279 + S + R YN DF Y+ A FF+IKSYSEDD+HKSIKY+VW+STPNGNKRLD AY++ Sbjct: 344 IASLIRRDQYNLPDFPTKYDHAFFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDGAYQE 403
Query: 280 AQEKSEAPSTLCPVFFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVKWHI 459 A+E+ + CPVF FFSVN SGQFCGVAEM+G VDF KNMDFW Q KWNG PVKWHI Sbjct: 404 AKERMGDRGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGFFPVKWHI 463
Query: 460 IKDVPNGHFRHIILSNNDNKPVTHSRDTQEVHFHQGLEMLKIFKFFPTRTSLLDDFAFYD 639 IKDVPN RHIIL NNDNKPVT+SRDTQEV F QG+E+L IFK + ++TS+LDDF FY+ Sbjct: 464 IKDVPNPQLRHIILENNDNKPVTNSRDTQEVRFPQGIEILNIFKNYVSKTSILDDFDFYE 523
Query: 640 GRQRGVAGKEVK 675 RQ+ + K++K Sbjct: 524 SRQKVMQDKKIK 535
>tr|Q5QM96|Q5QM96_ORYSJ cDNA clone:J013046L18, full insert sequence OS=Oryza sativa subsp. japonica GN=B1144G04.45-2 PE=2 SV=1 Length = 609
Score = 271 bits (693), Expect = 3e-71 Identities = 125/181 (69%), Positives = 145/181 (80%) Frame = +1
Query: 109 SVNRSDYNKDDFQVSYEAAKFFIIKSYSEDDVHKSIKYSVWSSTPNGNKRLDEAYRKAQE 288 +++R YN DF Y+ A FF+IKSYSEDD+HKSIKY+VW+STPNGNKRLD A++ AQE Sbjct: 349 AMSRDAYNLPDFVTKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAFKLAQE 408
Query: 289 KSEAPSTLCPVFFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVKWHIIKD 468 + T CP+F FFSVN SGQFCGVAEMVGPVDF +NM+FW Q KWNG PVKWHIIKD Sbjct: 409 RVAEKGTKCPMFLFFSVNASGQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKD 468
Query: 469 VPNGHFRHIILSNNDNKPVTHSRDTQEVHFHQGLEMLKIFKFFPTRTSLLDDFAFYDGRQ 648 VPN FRHIIL NN+NKPVT+SRDTQEV F QG EML IFK F +TS+LDDF FY+ RQ Sbjct: 469 VPNPQFRHIILENNENKPVTNSRDTQEVKFPQGSEMLNIFKNFSCKTSILDDFDFYENRQ 528
Query: 649 R 651 + Sbjct: 529 K 529
>tr|Q5QM95|Q5QM95_ORYSJ Rubisco subunit binding-protein beta subunit-like OS=Oryza sativa subsp. japonica GN=B1144G04.45-1 PE=4 SV=1 Length = 598
Score = 271 bits (693), Expect = 3e-71 Identities = 125/181 (69%), Positives = 145/181 (80%) Frame = +1
Query: 109 SVNRSDYNKDDFQVSYEAAKFFIIKSYSEDDVHKSIKYSVWSSTPNGNKRLDEAYRKAQE 288 +++R YN DF Y+ A FF+IKSYSEDD+HKSIKY+VW+STPNGNKRLD A++ AQE Sbjct: 338 AMSRDAYNLPDFVTKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAFKLAQE 397
Query: 289 KSEAPSTLCPVFFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVKWHIIKD 468 + T CP+F FFSVN SGQFCGVAEMVGPVDF +NM+FW Q KWNG PVKWHIIKD Sbjct: 398 RVAEKGTKCPMFLFFSVNASGQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKD 457
Query: 469 VPNGHFRHIILSNNDNKPVTHSRDTQEVHFHQGLEMLKIFKFFPTRTSLLDDFAFYDGRQ 648 VPN FRHIIL NN+NKPVT+SRDTQEV F QG EML IFK F +TS+LDDF FY+ RQ Sbjct: 458 VPNPQFRHIILENNENKPVTNSRDTQEVKFPQGSEMLNIFKNFSCKTSILDDFDFYENRQ 517
Query: 649 R 651 + Sbjct: 518 K 518
>tr|Q5QM94|Q5QM94_ORYSJ cDNA clone:J013144M15, full insert sequence OS=Oryza sativa subsp. japonica GN=B1144G04.45-3 PE=2 SV=1 Length = 458
Score = 271 bits (693), Expect = 3e-71 Identities = 125/181 (69%), Positives = 145/181 (80%) Frame = +1
Query: 109 SVNRSDYNKDDFQVSYEAAKFFIIKSYSEDDVHKSIKYSVWSSTPNGNKRLDEAYRKAQE 288 +++R YN DF Y+ A FF+IKSYSEDD+HKSIKY+VW+STPNGNKRLD A++ AQE Sbjct: 198 AMSRDAYNLPDFVTKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAFKLAQE 257
Query: 289 KSEAPSTLCPVFFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVKWHIIKD 468 + T CP+F FFSVN SGQFCGVAEMVGPVDF +NM+FW Q KWNG PVKWHIIKD Sbjct: 258 RVAEKGTKCPMFLFFSVNASGQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKD 317
Query: 469 VPNGHFRHIILSNNDNKPVTHSRDTQEVHFHQGLEMLKIFKFFPTRTSLLDDFAFYDGRQ 648 VPN FRHIIL NN+NKPVT+SRDTQEV F QG EML IFK F +TS+LDDF FY+ RQ Sbjct: 318 VPNPQFRHIILENNENKPVTNSRDTQEVKFPQGSEMLNIFKNFSCKTSILDDFDFYENRQ 377
Query: 649 R 651 + Sbjct: 378 K 378
>tr|A2ZWJ5|A2ZWJ5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_002917 PE=4 SV=1 Length = 594
Score = 271 bits (693), Expect = 3e-71 Identities = 125/181 (69%), Positives = 145/181 (80%) Frame = +1
Query: 109 SVNRSDYNKDDFQVSYEAAKFFIIKSYSEDDVHKSIKYSVWSSTPNGNKRLDEAYRKAQE 288 +++R YN DF Y+ A FF+IKSYSEDD+HKSIKY+VW+STPNGNKRLD A++ AQE Sbjct: 334 AMSRDAYNLPDFVTKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAFKLAQE 393
Query: 289 KSEAPSTLCPVFFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVKWHIIKD 468 + T CP+F FFSVN SGQFCGVAEMVGPVDF +NM+FW Q KWNG PVKWHIIKD Sbjct: 394 RVAEKGTKCPMFLFFSVNASGQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKD 453
Query: 469 VPNGHFRHIILSNNDNKPVTHSRDTQEVHFHQGLEMLKIFKFFPTRTSLLDDFAFYDGRQ 648 VPN FRHIIL NN+NKPVT+SRDTQEV F QG EML IFK F +TS+LDDF FY+ RQ Sbjct: 454 VPNPQFRHIILENNENKPVTNSRDTQEVKFPQGSEMLNIFKNFSCKTSILDDFDFYENRQ 513
Query: 649 R 651 + Sbjct: 514 K 514
>tr|A2WTS8|A2WTS8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03270 PE=4 SV=1 Length = 594
Score = 271 bits (693), Expect = 3e-71 Identities = 125/181 (69%), Positives = 145/181 (80%) Frame = +1
Query: 109 SVNRSDYNKDDFQVSYEAAKFFIIKSYSEDDVHKSIKYSVWSSTPNGNKRLDEAYRKAQE 288 +++R YN DF Y+ A FF+IKSYSEDD+HKSIKY+VW+STPNGNKRLD A++ AQE Sbjct: 334 AMSRDAYNLPDFVTKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAFKLAQE 393
Query: 289 KSEAPSTLCPVFFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVKWHIIKD 468 + T CP+F FFSVN SGQFCGVAEMVGPVDF +NM+FW Q KWNG PVKWHIIKD Sbjct: 394 RVAEKGTKCPMFLFFSVNASGQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKD 453
Query: 469 VPNGHFRHIILSNNDNKPVTHSRDTQEVHFHQGLEMLKIFKFFPTRTSLLDDFAFYDGRQ 648 VPN FRHIIL NN+NKPVT+SRDTQEV F QG EML IFK F +TS+LDDF FY+ RQ Sbjct: 454 VPNPQFRHIILENNENKPVTNSRDTQEVKFPQGSEMLNIFKNFSCKTSILDDFDFYENRQ 513
Query: 649 R 651 + Sbjct: 514 K 514
>tr|B4FF31|B4FF31_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 338
Score = 269 bits (688), Expect = 1e-70 Identities = 125/180 (69%), Positives = 141/180 (78%) Frame = +1
Query: 112 VNRSDYNKDDFQVSYEAAKFFIIKSYSEDDVHKSIKYSVWSSTPNGNKRLDEAYRKAQEK 291 + ++ YN DF YE A FF+IKSYSEDD+HKSIKY+VW+STPNGNKRLD AYR AQE+ Sbjct: 84 IRKTAYNLSDFVTKYEQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAYRLAQER 143
Query: 292 SEAPSTLCPVFFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVKWHIIKDV 471 T CPVF FFSVN S QFCGVAEMVGPVDF +NM+FW Q KWNG VKWHIIKDV Sbjct: 144 MAEKGTKCPVFLFFSVNASDQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFSVKWHIIKDV 203
Query: 472 PNGHFRHIILSNNDNKPVTHSRDTQEVHFHQGLEMLKIFKFFPTRTSLLDDFAFYDGRQR 651 PN FRHIIL NN+NKPVT+SRDTQEV F QG EML IFK F + S+LDDF FY+ RQ+ Sbjct: 204 PNPQFRHIILENNENKPVTNSRDTQEVKFSQGTEMLNIFKNFTCKASILDDFDFYENRQK 263
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