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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960024
Clone id TST39A01NGRL0006_E12
Library
Length 639
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_E12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATGGAGTCCACCCACAATGATCTCTCTTCTGCTGAGCTCTCCAGCTGTGACATGGAGTTG
GAACCAGAGGAGTTCGTGCTGGCAGACATCGTCGAGTCCAGCCCGTTCGGATACATAAAG
TCGCTGTTTAAGTCCTGGTCTAAAGATGGAGTTCCGCCGCTTTCCAAGCAGGGCGTTGGG
ACGACCGACCACAGTGCTACCGGGGTTAGTCCGAGCTTGAAGACATCCGGACACACAACC
TGTCGCAACTATCATCTGAGCTGGGCAGCCATATGCTCCATCATTCTCATGAAGATTCTC
CTCCTCTTTGCCACCCCTGTTGAGATCTTTGGAAACATTCTGGAGTATATCCTGAATCTG
TTTTACATGAACAATGGTCTCAGGGCCTTTTTTGTTACGCTCTTTTTTGACCTTGGTAAG
CCCAATTAGTTTCAGCTCAATCTCCAGCTCTTTGGGCAGTCTATTACTACTTTTTCTGTC
TGATAATTCTGCGTTAAAGGGATGACTTATGTATTGGAGCTCTCTCCACACACACACACA
CACACACACACCCCTTCCATGCATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCACACACACACACACACACACACACACACACA
■■Homology search results ■■ -
sp_hit_id Q5U2X2
Definition sp|Q5U2X2|SPAG1_RAT Sperm-associated antigen 1 OS=Rattus norvegicus
Align length 140
Score (bit) 32.0
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960024|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_E12, 5'
         (639 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5U2X2|SPAG1_RAT Sperm-associated antigen 1 OS=Rattus norvegi...    32   2.8  
sp|Q5F464|LPP_CHICK Lipoma-preferred partner homolog OS=Gallus g...    32   2.8  
sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains pr...    30   8.1  
sp|Q5RF36|NARFL_PONAB Nuclear prelamin A recognition factor-like...    30   8.1  
sp|Q9H6Q4|NARFL_HUMAN Nuclear prelamin A recognition factor-like...    30   8.1  
sp|Q8TSH7|MDH_METAC Malate dehydrogenase OS=Methanosarcina aceti...    30   8.1  

>sp|Q5U2X2|SPAG1_RAT Sperm-associated antigen 1 OS=Rattus norvegicus
           GN=Spag1 PE=2 SV=1
          Length = 893

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 2/140 (1%)
 Frame = -1

Query: 420 LTKVKKERNKKGPETIVHVKQIQDILQNVSKDLNRGGKEEENLHENDGAYGCPAQMIVAT 241
           L++V++E     P + +  K  + +++ V    + GGK +E+ HE+DG        + A 
Sbjct: 320 LSEVERELKNSEPASELQTKGKRMVIEEVENSGDEGGKGDEDDHEDDGV------DMAAM 373

Query: 240 GCVSGCLQARTNPGSTVVGRPNALLGKRRNSIFRPGLKQRLYVSERAGLDDVCQHELLWF 61
           G +   L  R+  G             RR     PG +Q+    E         H+L   
Sbjct: 374 GNIQKKLMVRSQGGRR----------SRRARTPMPGAEQQEGQPETGTASTSDNHDLEER 423

Query: 60  QLHVTAGELSRR--EIIVGG 7
           +   + G+L  R  E+  GG
Sbjct: 424 RAADSPGDLKSRGNELFRGG 443


>sp|Q5F464|LPP_CHICK Lipoma-preferred partner homolog OS=Gallus
           gallus GN=LPP PE=2 SV=1
          Length = 604

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 40  SSCDMELEPEEFVLADIVESSPFGYIKSLFKSWSKDGVPPLSKQGVGTTDHSATGVSPSL 219
           SS D E++    +LAD+  SSP+                P  +QG GT+  +AT  S S 
Sbjct: 114 SSLDAEIDSLTSILADLESSSPY---------------KPRIQQGSGTSSSAATTPSVST 158

Query: 220 KTSGH 234
             +GH
Sbjct: 159 PVTGH 163


>sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein
            1 OS=Homo sapiens GN=SHANK1 PE=1 SV=1
          Length = 2161

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 115  IKSLFKSWSKDGVPPL-SKQGVGTTDHSATG-VSPSLKTSGHTT 240
            + SLF++W K  +PPL +  GV  T  +A G  SPS  +S  +T
Sbjct: 1937 VSSLFQNWPKPPLPPLPTGTGVSPTAAAAPGATSPSASSSSTST 1980


>sp|Q5RF36|NARFL_PONAB Nuclear prelamin A recognition factor-like
           protein OS=Pongo abelii GN=NARFL PE=2 SV=1
          Length = 476

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
 Frame = -1

Query: 315 GGKEEENLHENDGAYGCPAQMIVATGCVSGC------LQARTNPGSTVVGRPNALLGKRR 154
           G +  +NL +      CP   +    C SGC      LQA   P   ++     L G  R
Sbjct: 369 GFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQAPDRPSRELLQHVERLYGMVR 428

Query: 153 NSI--FRPGLKQRLYVSERAGLDDVCQHELLWFQLH 52
                  PG+ Q LY     G D  C   LL  Q H
Sbjct: 429 AEAPEDAPGV-QELYTHWLQGTDSECAGRLLHTQYH 463


>sp|Q9H6Q4|NARFL_HUMAN Nuclear prelamin A recognition factor-like
           protein OS=Homo sapiens GN=NARFL PE=1 SV=1
          Length = 476

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
 Frame = -1

Query: 315 GGKEEENLHENDGAYGCPAQMIVATGCVSGC------LQARTNPGSTVVGRPNALLGKRR 154
           G +  +NL +      CP   +    C SGC      LQA   P   ++     L G  R
Sbjct: 369 GFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQAPDRPSRELLQHVERLYGMVR 428

Query: 153 NSI--FRPGLKQRLYVSERAGLDDVCQHELLWFQLH 52
                  PG+ Q LY     G D  C   LL  Q H
Sbjct: 429 AEAPEDAPGV-QELYTHWLQGTDSECAGRLLHTQYH 463


>sp|Q8TSH7|MDH_METAC Malate dehydrogenase OS=Methanosarcina
           acetivorans GN=mdh PE=3 SV=1
          Length = 307

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 55  ELEPEEFVLADIVESSPFGYIKSLFKSWSKDGVPPLSKQGVGTTDHS 195
           ELEP E V+ DIVE  P G    L ++ + +G      Q  GT D++
Sbjct: 22  ELEPGEIVMTDIVEGLPQGKALDLMQAGAING---YDTQVTGTNDYA 65
tr_hit_id Q1W632
Definition tr|Q1W632|Q1W632_RICCO LipRC1p OS=Ricinus communis
Align length 43
Score (bit) 42.7
E-value 0.019
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960024|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_E12, 5'
         (639 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1W632|Q1W632_RICCO LipRC1p OS=Ricinus communis PE=2 SV=1           43   0.019
tr|A0T1K1|A0T1K1_RICCO Acidic triacylglycerol lipase 2 OS=Ricinu...    43   0.019
tr|A5ALY8|A5ALY8_VITVI Putative uncharacterized protein OS=Vitis...    41   0.054
tr|Q9LUL3|Q9LUL3_ARATH Genomic DNA, chromosome 3, P1 clone: MLN2...    40   0.12 
tr|Q93ZZ5|Q93ZZ5_ARATH Putative uncharacterized protein At3g1436...    40   0.12 
tr|Q8H1D5|Q8H1D5_ARATH Putative uncharacterized protein At3g1436...    40   0.12 
tr|A7P696|A7P696_VITVI Chromosome chr9 scaffold_7, whole genome ...    39   0.27 
tr|Q5VKJ7|Q5VKJ7_RICCO Lipase OS=Ricinus communis GN=OBL1 PE=2 SV=1    39   0.35 
tr|Q5S8F1|Q5S8F1_RICCO Lipase OS=Ricinus communis GN=OBL2 PE=2 SV=1    37   0.78 
tr|A9PEF2|A9PEF2_POPTR Putative uncharacterized protein OS=Popul...    37   0.78 
tr|Q4XJT6|Q4XJT6_PLACH Putative uncharacterized protein (Fragmen...    30   1.1  
tr|Q3Z8J3|Q3Z8J3_DEHE1 Metallopeptidase, M24 family OS=Dehalococ...    35   3.0  
tr|A9RBS5|A9RBS5_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.0  
tr|Q4T1K3|Q4T1K3_TETNG Chromosome 16 SCAF10562, whole genome sho...    27   3.0  
tr|A9V347|A9V347_MONBE Ubiquitin carboxyl-terminal hydrolase OS=...    28   3.2  
tr|B8LK97|B8LK97_PICSI Putative uncharacterized protein OS=Picea...    35   3.9  
tr|A7NTX4|A7NTX4_VITVI Chromosome chr18 scaffold_1, whole genome...    35   3.9  
tr|A9VA29|A9VA29_MONBE Predicted protein OS=Monosiga brevicollis...    27   5.2  
tr|A9RBT5|A9RBT5_PHYPA Predicted protein OS=Physcomitrella paten...    34   6.6  
tr|Q2NV84|Q2NV84_SODGM Cytochrome o ubiquinol oxidase subunit I ...    34   8.7  
tr|Q8L7S1|Q8L7S1_ARATH At1g45200 (At1g45200/At1g45200) OS=Arabid...    34   8.7  
tr|Q2V4I5|Q2V4I5_ARATH Uncharacterized protein At1g45201.2 OS=Ar...    34   8.7  
tr|B6TZH5|B6TZH5_MAIZE Putative uncharacterized protein OS=Zea m...    34   8.7  
tr|Q4Y6J9|Q4Y6J9_PLACH Putative uncharacterized protein OS=Plasm...    34   8.7  
tr|Q4T2J6|Q4T2J6_TETNG Chromosome undetermined SCAF10255, whole ...    27   8.9  

>tr|Q1W632|Q1W632_RICCO LipRC1p OS=Ricinus communis PE=2 SV=1
          Length = 526

 Score = 42.7 bits (99), Expect = 0.019
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = +1

Query: 250 YHLSWAAICSIILMKILLLFATPVEIFGNILEYILNLFYMNNG 378
           Y+  W+   S+++ K L LF TP+EI G + E+ LN +Y N+G
Sbjct: 54  YYSRWSV--SVLICKTLKLFETPLEILGRVTEFSLNFYYQNHG 94


>tr|A0T1K1|A0T1K1_RICCO Acidic triacylglycerol lipase 2 OS=Ricinus
           communis PE=2 SV=1
          Length = 526

 Score = 42.7 bits (99), Expect = 0.019
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = +1

Query: 250 YHLSWAAICSIILMKILLLFATPVEIFGNILEYILNLFYMNNG 378
           Y+  W+   S+++ K L LF TP+EI G + E+ LN +Y N+G
Sbjct: 54  YYSRWSV--SVLICKTLKLFETPLEILGRVTEFSLNFYYQNHG 94


>tr|A5ALY8|A5ALY8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027895 PE=4 SV=1
          Length = 487

 Score = 41.2 bits (95), Expect = 0.054
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 262 WAAICSIILMKILLLFATPVEIFGNILEYILNLFYMNNGLRAFFVTL 402
           W  + S+I  KI+ +F  P+E  G ++E++LNLF  N  L   F  L
Sbjct: 61  WVILVSVIACKIIAVFGKPMEWTGCLVEFLLNLFSQNGSLLGLFYNL 107


>tr|Q9LUL3|Q9LUL3_ARATH Genomic DNA, chromosome 3, P1 clone: MLN21
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 507

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 262 WAAICSIILMKILLLFATPVEIFGNILEYILNLFYMNNGLRAFFVTL 402
           W  + SI++ KI+ L  TP+E  G ++++ LNLF  N G     + L
Sbjct: 70  WVIVVSILVRKIIRLLRTPMEFTGFVVDFFLNLFSANGGFFGLLLRL 116


>tr|Q93ZZ5|Q93ZZ5_ARATH Putative uncharacterized protein At3g14360
           OS=Arabidopsis thaliana GN=At3g14360 PE=2 SV=1
          Length = 469

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 262 WAAICSIILMKILLLFATPVEIFGNILEYILNLFYMNNGLRAFFVTL 402
           W  + SI++ KI+ L  TP+E  G ++++ LNLF  N G     + L
Sbjct: 21  WVIVVSILVRKIIRLLRTPMEFTGFVVDFFLNLFSANGGFFGLLLRL 67


>tr|Q8H1D5|Q8H1D5_ARATH Putative uncharacterized protein At3g14360
           OS=Arabidopsis thaliana GN=At3g14360 PE=2 SV=1
          Length = 469

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 262 WAAICSIILMKILLLFATPVEIFGNILEYILNLFYMNNGLRAFFVTL 402
           W  + SI++ KI+ L  TP+E  G ++++ LNLF  N G     + L
Sbjct: 21  WVIVVSILVRKIIRLLRTPMEFTGFVVDFFLNLFSANGGFFGLLLRL 67


>tr|A7P696|A7P696_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033982001
           PE=4 SV=1
          Length = 510

 Score = 38.9 bits (89), Expect = 0.27
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 262 WAAICSIILMKILLLFATPVEIFGNILEYILNLFYMNNGLRAFFVTL 402
           W  + S+I  KI+ +F  P+E  G ++E++LNLF  N  L      L
Sbjct: 61  WVILVSVIACKIIAVFGKPMEWTGCLVEFLLNLFSQNGSLLGLLYNL 107


>tr|Q5VKJ7|Q5VKJ7_RICCO Lipase OS=Ricinus communis GN=OBL1 PE=2 SV=1
          Length = 526

 Score = 38.5 bits (88), Expect = 0.35
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 250 YHLSWAAICSIILMKILLLFATPVEIFGNILEYILNLFYMNNGLRAFFVTLF 405
           Y+  W    S+ + KIL LF  P  + G++ +++LN +Y N+G       +F
Sbjct: 54  YYSRWPV--SVFICKILQLFQMPAAMLGHLTDFLLNFYYQNHGFLGILRNIF 103


>tr|Q5S8F1|Q5S8F1_RICCO Lipase OS=Ricinus communis GN=OBL2 PE=2 SV=1
          Length = 519

 Score = 37.4 bits (85), Expect = 0.78
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 262 WAAICSIILMKILLLFATPVEIFGNILEYILNLFYMNNG 378
           W  + SII+ ++L L  TP++  G ++++ LNL   N+G
Sbjct: 61  WILLVSIIIRRVLALIDTPLKYLGYVIDFFLNLISQNSG 99


>tr|A9PEF2|A9PEF2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 471

 Score = 37.4 bits (85), Expect = 0.78
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 247 NYHLSWAAICSIILMKILLLFATPVEIFGNILEYILNLFYMNNG 378
           ++   W    SII+ K+L  F+ P+  FG++ E  LNL   N G
Sbjct: 48  DFQRRWLIFISIIVQKLLQFFSKPISFFGSLTEMWLNLLSSNGG 91