DK960039
Clone id TST39A01NGRL0006_F05
Library
Length 302
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_F05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GTCGTCCTCTGCAAGATCATCATGGTTTCGATGCCAAGAGCAAGGGCTGGGTGGACTACA
ATACCCTTGACCCATGGATCGCAAGCTCAGCCACCCCCGTCTCGGAAGGAAGGTAAACTT
GCCGCTTGCTGTCGATGCCTTGTTTCCTTCTGAACAGCATAATGTCGTTGGCTGCTGACA
TTTCTGGAACTTCAAGAGTTGCCTTATCACTTGTTCCCCTGTGTCTTGAGACCAACTCCT
GGAAACAACTAAAAGAGCAAATTGTTTTAATCTCCAACAGAATATCCCTGTTGAAGCAGG
CG
■■Homology search results ■■ -
sp_hit_id Q5RBI3
Definition sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
Align length 85
Score (bit) 45.4
E-value 9.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960039|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F05, 5'
(302 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subun... 45 9e-05
sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subun... 45 9e-05
sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subun... 44 3e-04
sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subun... 41 0.002
sp|Q9CQC3|CI135_MOUSE Uncharacterized protein C9orf135 homolog O... 34 0.20
sp|Q12250|RPN5_YEAST 26S proteasome regulatory subunit RPN5 OS=S... 32 0.99
sp|Q32L77|CI135_BOVIN Uncharacterized protein C9orf135 homolog O... 30 3.8
sp|Q1LH90|Y3614_RALME UPF0161 protein Rmet_3614 OS=Ralstonia met... 30 4.9
sp|Q5D873|MATK_LYCCR Maturase K OS=Lycopodiella cernua GN=matK P... 29 6.4
sp|Q5SCW7|MATK_HUPLU Maturase K OS=Huperzia lucidula GN=matK PE=... 29 6.4
sp|O95428|PPN_HUMAN Papilin OS=Homo sapiens GN=PAPLN PE=2 SV=3 29 8.4
sp|A6TCE4|PEPB_KLEP7 Peptidase B OS=Klebsiella pneumoniae subsp.... 29 8.4
sp|Q6BDI8|MATK_PINCL Maturase K OS=Pinus clausa GN=matK PE=3 SV=1 29 8.4
sp|Q9MV60|MATK_PINBN Maturase K OS=Pinus banksiana GN=matK PE=3 ... 29 8.4
sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 O... 29 8.4
sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4... 29 8.4
sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4... 29 8.4
sp|Q0I8L9|HEMH_SYNS3 Ferrochelatase OS=Synechococcus sp. (strain... 29 8.4
sp|Q9FLX3|FB293_ARATH F-box protein At5g52880 OS=Arabidopsis tha... 29 8.4

>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit
12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3
Length = 456

Score = 45.4 bits (106), Expect = 9e-05
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3

Query: 51 VDYN-TLDPWIASSATPVSEGR*TCRLLSMPCFLLNSIMSLAADISGTSRVALSLVPLCL 227
VDY+ T+D + A EGR + + L A+D+ TSR+ +++V +C
Sbjct: 18 VDYSPTVDQRLPECAKLAKEGR--LQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCY 75

Query: 228 ETNSWKQLKEQIVLISNRISLLKQA 302
E W L E I+L+S R S LKQA
Sbjct: 76 EAKEWDLLNENIMLLSKRRSQLKQA 100


>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit
12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3
Length = 456

Score = 45.4 bits (106), Expect = 9e-05
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3

Query: 51 VDYN-TLDPWIASSATPVSEGR*TCRLLSMPCFLLNSIMSLAADISGTSRVALSLVPLCL 227
VDY+ T+D + A EGR + + L A+D+ TSR+ +++V +C
Sbjct: 18 VDYSATVDQRLPECAKLAKEGR--LQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCY 75

Query: 228 ETNSWKQLKEQIVLISNRISLLKQA 302
E W L E I+L+S R S LKQA
Sbjct: 76 EAKEWDLLNENIMLLSKRRSQLKQA 100


>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit
12 OS=Bos taurus GN=PSMD12 PE=2 SV=3
Length = 456

Score = 43.9 bits (102), Expect = 3e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +3

Query: 171 AADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
A+D+ TSR+ +++V +C E W L E I+L+S R S LKQA
Sbjct: 57 ASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQA 100


>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit
12 OS=Mus musculus GN=Psmd12 PE=2 SV=3
Length = 456

Score = 40.8 bits (94), Expect = 0.002
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3

Query: 171 AADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
A+D+ TSR+ +++V +C E W E I+L+S R S LKQA
Sbjct: 57 ASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQA 100


>sp|Q9CQC3|CI135_MOUSE Uncharacterized protein C9orf135 homolog
OS=Mus musculus PE=2 SV=1
Length = 228

Score = 34.3 bits (77), Expect = 0.20
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3

Query: 156 CSEGNKASTASGKFTFLPRRGWLSLRSMGQGYCSPPSPCSWHRNHDDLAED 4
C E + G L R+G L+LRS + Y P SWHRN + +D
Sbjct: 11 CFESKERWYEIGPTDLLERKGSLTLRSHHKKYSEPVLVYSWHRNREAFPKD 61


>sp|Q12250|RPN5_YEAST 26S proteasome regulatory subunit RPN5
OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3
Length = 445

Score = 32.0 bits (71), Expect = 0.99
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3

Query: 171 AADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLK 296
A+D++ + V +V L N W L EQ+ L+S + LK
Sbjct: 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK 90


>sp|Q32L77|CI135_BOVIN Uncharacterized protein C9orf135 homolog
OS=Bos taurus PE=2 SV=1
Length = 232

Score = 30.0 bits (66), Expect = 3.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3

Query: 123 GKFTFLPRRGWLSLRSMGQGYCSPPSPCSWHRNHDDLAED 4
G + R+G L+LRS + Y P SWHR+ + +D
Sbjct: 22 GPTDLMERKGSLTLRSHHKKYSKPVLVYSWHRDRETYPKD 61


>sp|Q1LH90|Y3614_RALME UPF0161 protein Rmet_3614 OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=Rmet_3614 PE=3 SV=1
Length = 96

Score = 29.6 bits (65), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1

Query: 34 PRARAGWTTIPLTHGSQAQPPPSRKEGK 117
P + G+ +P THG+ A PP S G+
Sbjct: 59 PFTKGGYDPVPATHGTAAAPPASAAPGR 86


>sp|Q5D873|MATK_LYCCR Maturase K OS=Lycopodiella cernua GN=matK PE=3
SV=1
Length = 517

Score = 29.3 bits (64), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2

Query: 298 CFNRDILLEIKTICSFSCFQELVSRHRGT 212
C NR L +I+ I FSC + L +H+ T
Sbjct: 437 CLNRSDLYQIQYILRFSCAKTLACKHKST 465


>sp|Q5SCW7|MATK_HUPLU Maturase K OS=Huperzia lucidula GN=matK PE=3
SV=2
Length = 532

Score = 29.3 bits (64), Expect = 6.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2

Query: 298 CFNRDILLEIKTICSFSCFQELVSRHRGT 212
C NR+ L +I+ I FSC + L +H+ T
Sbjct: 419 CLNRNGLYQIQYILRFSCAKTLACKHKST 447


tr_hit_id A9TLD4
Definition tr|A9TLD4|A9TLD4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 53.1
E-value 7.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960039|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F05, 5'
(302 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TLD4|A9TLD4_PHYPA Predicted protein OS=Physcomitrella paten... 53 7e-06
tr|A9S9L3|A9S9L3_PHYPA Predicted protein OS=Physcomitrella paten... 52 1e-05
tr|Q851Y6|Q851Y6_ORYSJ Os03g0851300 protein OS=Oryza sativa subs... 50 6e-05
tr|B8ANQ0|B8ANQ0_ORYSI Putative uncharacterized protein OS=Oryza... 50 6e-05
tr|A7PKX7|A7PKX7_VITVI Chromosome chr7 scaffold_20, whole genome... 49 9e-05
tr|B3TM04|B3TM04_ELAGV 26S proteasome subunit RPN5b OS=Elaeis gu... 49 1e-04
tr|B7FLC5|B7FLC5_MEDTR Putative uncharacterized protein OS=Medic... 49 2e-04
tr|B7FFC4|B7FFC4_MEDTR Putative uncharacterized protein (Fragmen... 49 2e-04
tr|A9PH46|A9PH46_POPTR Putative uncharacterized protein OS=Popul... 48 3e-04
tr|B6PFA0|B6PFA0_BRAFL Putative uncharacterized protein OS=Branc... 46 8e-04
tr|B6LDA1|B6LDA1_BRAFL Putative uncharacterized protein OS=Branc... 46 8e-04
tr|A7SCN9|A7SCN9_NEMVE Predicted protein OS=Nematostella vectens... 45 0.001
tr|Q8AW07|Q8AW07_DANRE Proteasome (Prosome, macropain) 26S subun... 45 0.002
tr|Q6IQG7|Q6IQG7_DANRE Psmd12 protein (Fragment) OS=Danio rerio ... 45 0.002
tr|Q5ZI37|Q5ZI37_CHICK Putative uncharacterized protein OS=Gallu... 45 0.002
tr|A9UME5|A9UME5_XENTR LOC100135329 protein OS=Xenopus tropicali... 45 0.002
tr|A7YYF2|A7YYF2_DANRE Proteasome (Prosome, macropain) 26S subun... 45 0.002
tr|A6RLH5|A6RLH5_BOTFB Putative uncharacterized protein OS=Botry... 45 0.002
tr|Q6NRX6|Q6NRX6_XENLA MGC81129 protein OS=Xenopus laevis GN=MGC... 44 0.004
tr|B1AT36|B1AT36_MOUSE Proteasome (Prosome, macropain) 26S subun... 44 0.004
tr|Q9FGF7|Q9FGF7_ARATH Proteasome regulatory subunit-like OS=Ara... 44 0.004
tr|Q8VWK0|Q8VWK0_ARATH AT5g64760/MVP7_9 (26S proteasome subunit ... 44 0.004
tr|Q4AC17|Q4AC17_BRACM 117M18_1 (Fragment) OS=Brassica campestri... 44 0.004
tr|A6NP15|A6NP15_HUMAN cDNA FLJ33879 fis, clone CTONG2007091, hi... 44 0.004
tr|Q7ZTL2|Q7ZTL2_XENLA Psmd12 protein (Fragment) OS=Xenopus laev... 44 0.005
tr|Q6AXA3|Q6AXA3_XENLA Psmd12 protein OS=Xenopus laevis GN=psmd1... 44 0.005
tr|Q28EG1|Q28EG1_XENTR Proteasome (Prosome, macropain) 26S subun... 44 0.005
tr|A4IHT1|A4IHT1_XENTR Proteasome 26S non-ATPase subunit 12 OS=X... 44 0.005
tr|Q9CSW4|Q9CSW4_MOUSE Putative uncharacterized protein (Fragmen... 44 0.005
tr|Q9CQT4|Q9CQT4_MOUSE Putative uncharacterized protein OS=Mus m... 44 0.005

>tr|A9TLD4|A9TLD4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_170720 PE=4 SV=1
Length = 455

Score = 53.1 bits (126), Expect = 7e-06
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +3

Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
M LAAD++GT +V ++ LC + +WK L EQI+L+S R S LKQA
Sbjct: 23 MRLAADVAGTKKVVTEIIELCYKAKAWKTLNEQILLLSKRRSQLKQA 69


>tr|A9S9L3|A9S9L3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_182594 PE=4 SV=1
Length = 452

Score = 52.0 bits (123), Expect = 1e-05
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +3

Query: 168 LAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
LAAD++GT +V ++ LC E +WK L EQI+L+S R S LKQA
Sbjct: 22 LAADVAGTKKVVTEIIRLCYEGKAWKTLNEQILLLSKRRSQLKQA 66


>tr|Q851Y6|Q851Y6_ORYSJ Os03g0851300 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0015N08.15 PE=2 SV=1
Length = 443

Score = 50.1 bits (118), Expect = 6e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +3

Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
M LA D++GT + A+ +V LC + +WK L +QIV++S R LKQA
Sbjct: 22 MRLAGDVAGTRKAAIDIVELCYKAGAWKTLNDQIVVLSKRRGQLKQA 68


>tr|B8ANQ0|B8ANQ0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_14352 PE=4 SV=1
Length = 443

Score = 50.1 bits (118), Expect = 6e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +3

Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
M LA D++GT + A+ +V LC + +WK L +QIV++S R LKQA
Sbjct: 22 MRLAGDVAGTRKAAIDIVELCYKAGAWKTLNDQIVVLSKRRGQLKQA 68


>tr|A7PKX7|A7PKX7_VITVI Chromosome chr7 scaffold_20, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019352001
PE=4 SV=1
Length = 320

Score = 49.3 bits (116), Expect = 9e-05
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +3

Query: 168 LAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
LA D+SGT + ++ LC E +WK L +QIVL+S R LKQA
Sbjct: 28 LAGDVSGTKKAVTDILQLCFEARAWKTLNDQIVLLSKRRGQLKQA 72


>tr|B3TM04|B3TM04_ELAGV 26S proteasome subunit RPN5b OS=Elaeis
guineensis var. tenera PE=2 SV=1
Length = 440

Score = 48.9 bits (115), Expect = 1e-04
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +3

Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
M LA D++GT + +V LC + +WK L +QIVL+S R LKQA
Sbjct: 19 MRLAGDVAGTKKAVTDIVELCYKAGAWKTLNDQIVLLSKRRGQLKQA 65


>tr|B7FLC5|B7FLC5_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 441

Score = 48.5 bits (114), Expect = 2e-04
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +3

Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
M LA +I GT + A+ ++ LC E +WK L +QIV++S R LKQA
Sbjct: 21 MRLAGEIVGTRKAAIDILQLCFEAKAWKTLNDQIVVLSKRRGQLKQA 67


>tr|B7FFC4|B7FFC4_MEDTR Putative uncharacterized protein (Fragment)
OS=Medicago truncatula PE=2 SV=1
Length = 199

Score = 48.5 bits (114), Expect = 2e-04
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +3

Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
M LA +I GT + A+ ++ LC E +WK L +QIV++S R LKQA
Sbjct: 21 MRLAGEIVGTRKAAIDILQLCFEAKAWKTLNDQIVVLSKRRGQLKQA 67


>tr|A9PH46|A9PH46_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 442

Score = 47.8 bits (112), Expect = 3e-04
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +3

Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
M LA D++GT + ++ LC E WK L +QI+L+S + LKQA
Sbjct: 21 MRLAGDVAGTKKAVTEILQLCFEAKDWKALNDQIILLSKKRGQLKQA 67


>tr|B6PFA0|B6PFA0_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_62283 PE=4 SV=1
Length = 442

Score = 46.2 bits (108), Expect = 8e-04
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3

Query: 171 AADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302
AAD+ T+R+ + + LC E N+W+ L E I L+S R S LKQA
Sbjct: 42 AADMHSTARILVKVAQLCFECNNWEALNENITLLSKRRSQLKQA 85