DK960039 |
Clone id |
TST39A01NGRL0006_F05 |
Library |
TST39 |
Length |
302 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_F05. 5' end sequence. |
Accession |
DK960039 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GTCGTCCTCTGCAAGATCATCATGGTTTCGATGCCAAGAGCAAGGGCTGGGTGGACTACA ATACCCTTGACCCATGGATCGCAAGCTCAGCCACCCCCGTCTCGGAAGGAAGGTAAACTT GCCGCTTGCTGTCGATGCCTTGTTTCCTTCTGAACAGCATAATGTCGTTGGCTGCTGACA TTTCTGGAACTTCAAGAGTTGCCTTATCACTTGTTCCCCTGTGTCTTGAGACCAACTCCT GGAAACAACTAAAAGAGCAAATTGTTTTAATCTCCAACAGAATATCCCTGTTGAAGCAGG CG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5RBI3 |
Definition |
sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii |
Align length |
85 |
Score (bit) |
45.4 |
E-value |
9.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TLD4 |
Definition |
tr|A9TLD4|A9TLD4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
47 |
Score (bit) |
53.1 |
E-value |
7.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960039|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_F05, 5' (302 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TLD4|A9TLD4_PHYPA Predicted protein OS=Physcomitrella paten... 53 7e-06 tr|A9S9L3|A9S9L3_PHYPA Predicted protein OS=Physcomitrella paten... 52 1e-05 tr|Q851Y6|Q851Y6_ORYSJ Os03g0851300 protein OS=Oryza sativa subs... 50 6e-05 tr|B8ANQ0|B8ANQ0_ORYSI Putative uncharacterized protein OS=Oryza... 50 6e-05 tr|A7PKX7|A7PKX7_VITVI Chromosome chr7 scaffold_20, whole genome... 49 9e-05 tr|B3TM04|B3TM04_ELAGV 26S proteasome subunit RPN5b OS=Elaeis gu... 49 1e-04 tr|B7FLC5|B7FLC5_MEDTR Putative uncharacterized protein OS=Medic... 49 2e-04 tr|B7FFC4|B7FFC4_MEDTR Putative uncharacterized protein (Fragmen... 49 2e-04 tr|A9PH46|A9PH46_POPTR Putative uncharacterized protein OS=Popul... 48 3e-04 tr|B6PFA0|B6PFA0_BRAFL Putative uncharacterized protein OS=Branc... 46 8e-04 tr|B6LDA1|B6LDA1_BRAFL Putative uncharacterized protein OS=Branc... 46 8e-04 tr|A7SCN9|A7SCN9_NEMVE Predicted protein OS=Nematostella vectens... 45 0.001 tr|Q8AW07|Q8AW07_DANRE Proteasome (Prosome, macropain) 26S subun... 45 0.002 tr|Q6IQG7|Q6IQG7_DANRE Psmd12 protein (Fragment) OS=Danio rerio ... 45 0.002 tr|Q5ZI37|Q5ZI37_CHICK Putative uncharacterized protein OS=Gallu... 45 0.002 tr|A9UME5|A9UME5_XENTR LOC100135329 protein OS=Xenopus tropicali... 45 0.002 tr|A7YYF2|A7YYF2_DANRE Proteasome (Prosome, macropain) 26S subun... 45 0.002 tr|A6RLH5|A6RLH5_BOTFB Putative uncharacterized protein OS=Botry... 45 0.002 tr|Q6NRX6|Q6NRX6_XENLA MGC81129 protein OS=Xenopus laevis GN=MGC... 44 0.004 tr|B1AT36|B1AT36_MOUSE Proteasome (Prosome, macropain) 26S subun... 44 0.004 tr|Q9FGF7|Q9FGF7_ARATH Proteasome regulatory subunit-like OS=Ara... 44 0.004 tr|Q8VWK0|Q8VWK0_ARATH AT5g64760/MVP7_9 (26S proteasome subunit ... 44 0.004 tr|Q4AC17|Q4AC17_BRACM 117M18_1 (Fragment) OS=Brassica campestri... 44 0.004 tr|A6NP15|A6NP15_HUMAN cDNA FLJ33879 fis, clone CTONG2007091, hi... 44 0.004 tr|Q7ZTL2|Q7ZTL2_XENLA Psmd12 protein (Fragment) OS=Xenopus laev... 44 0.005 tr|Q6AXA3|Q6AXA3_XENLA Psmd12 protein OS=Xenopus laevis GN=psmd1... 44 0.005 tr|Q28EG1|Q28EG1_XENTR Proteasome (Prosome, macropain) 26S subun... 44 0.005 tr|A4IHT1|A4IHT1_XENTR Proteasome 26S non-ATPase subunit 12 OS=X... 44 0.005 tr|Q9CSW4|Q9CSW4_MOUSE Putative uncharacterized protein (Fragmen... 44 0.005 tr|Q9CQT4|Q9CQT4_MOUSE Putative uncharacterized protein OS=Mus m... 44 0.005
>tr|A9TLD4|A9TLD4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_170720 PE=4 SV=1 Length = 455
Score = 53.1 bits (126), Expect = 7e-06 Identities = 24/47 (51%), Positives = 33/47 (70%) Frame = +3
Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302 M LAAD++GT +V ++ LC + +WK L EQI+L+S R S LKQA Sbjct: 23 MRLAADVAGTKKVVTEIIELCYKAKAWKTLNEQILLLSKRRSQLKQA 69
>tr|A9S9L3|A9S9L3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_182594 PE=4 SV=1 Length = 452
Score = 52.0 bits (123), Expect = 1e-05 Identities = 24/45 (53%), Positives = 32/45 (71%) Frame = +3
Query: 168 LAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302 LAAD++GT +V ++ LC E +WK L EQI+L+S R S LKQA Sbjct: 22 LAADVAGTKKVVTEIIRLCYEGKAWKTLNEQILLLSKRRSQLKQA 66
>tr|Q851Y6|Q851Y6_ORYSJ Os03g0851300 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0015N08.15 PE=2 SV=1 Length = 443
Score = 50.1 bits (118), Expect = 6e-05 Identities = 22/47 (46%), Positives = 32/47 (68%) Frame = +3
Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302 M LA D++GT + A+ +V LC + +WK L +QIV++S R LKQA Sbjct: 22 MRLAGDVAGTRKAAIDIVELCYKAGAWKTLNDQIVVLSKRRGQLKQA 68
>tr|B8ANQ0|B8ANQ0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14352 PE=4 SV=1 Length = 443
Score = 50.1 bits (118), Expect = 6e-05 Identities = 22/47 (46%), Positives = 32/47 (68%) Frame = +3
Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302 M LA D++GT + A+ +V LC + +WK L +QIV++S R LKQA Sbjct: 22 MRLAGDVAGTRKAAIDIVELCYKAGAWKTLNDQIVVLSKRRGQLKQA 68
>tr|A7PKX7|A7PKX7_VITVI Chromosome chr7 scaffold_20, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019352001 PE=4 SV=1 Length = 320
Score = 49.3 bits (116), Expect = 9e-05 Identities = 22/45 (48%), Positives = 29/45 (64%) Frame = +3
Query: 168 LAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302 LA D+SGT + ++ LC E +WK L +QIVL+S R LKQA Sbjct: 28 LAGDVSGTKKAVTDILQLCFEARAWKTLNDQIVLLSKRRGQLKQA 72
>tr|B3TM04|B3TM04_ELAGV 26S proteasome subunit RPN5b OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 440
Score = 48.9 bits (115), Expect = 1e-04 Identities = 22/47 (46%), Positives = 30/47 (63%) Frame = +3
Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302 M LA D++GT + +V LC + +WK L +QIVL+S R LKQA Sbjct: 19 MRLAGDVAGTKKAVTDIVELCYKAGAWKTLNDQIVLLSKRRGQLKQA 65
>tr|B7FLC5|B7FLC5_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 441
Score = 48.5 bits (114), Expect = 2e-04 Identities = 22/47 (46%), Positives = 31/47 (65%) Frame = +3
Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302 M LA +I GT + A+ ++ LC E +WK L +QIV++S R LKQA Sbjct: 21 MRLAGEIVGTRKAAIDILQLCFEAKAWKTLNDQIVVLSKRRGQLKQA 67
>tr|B7FFC4|B7FFC4_MEDTR Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1 Length = 199
Score = 48.5 bits (114), Expect = 2e-04 Identities = 22/47 (46%), Positives = 31/47 (65%) Frame = +3
Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302 M LA +I GT + A+ ++ LC E +WK L +QIV++S R LKQA Sbjct: 21 MRLAGEIVGTRKAAIDILQLCFEAKAWKTLNDQIVVLSKRRGQLKQA 67
>tr|A9PH46|A9PH46_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 442
Score = 47.8 bits (112), Expect = 3e-04 Identities = 20/47 (42%), Positives = 29/47 (61%) Frame = +3
Query: 162 MSLAADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302 M LA D++GT + ++ LC E WK L +QI+L+S + LKQA Sbjct: 21 MRLAGDVAGTKKAVTEILQLCFEAKDWKALNDQIILLSKKRGQLKQA 67
>tr|B6PFA0|B6PFA0_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_62283 PE=4 SV=1 Length = 442
Score = 46.2 bits (108), Expect = 8e-04 Identities = 21/44 (47%), Positives = 29/44 (65%) Frame = +3
Query: 171 AADISGTSRVALSLVPLCLETNSWKQLKEQIVLISNRISLLKQA 302 AAD+ T+R+ + + LC E N+W+ L E I L+S R S LKQA Sbjct: 42 AADMHSTARILVKVAQLCFECNNWEALNENITLLSKRRSQLKQA 85
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