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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960043
Clone id TST39A01NGRL0006_F09
Library
Length 265
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_F09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATTCCGCTTTCAGGGCTGAGTATTCCTCGCGAACGTCGCCCTGCTTTTCTCGTGATGGCC
CTCCCCCCTCCAGATCGCCGTCATCGTGTTCTTCGTCCGCTCATCTCTAGCCTCTGATTA
CGATAGTTTGTATGCGGATGACGAGAAAATGGAAGTTTGGGTGAACGAAGTTGGGTTCAT
ACGACTTTCGTGGGGAGATTTACGACTACATCAGCTTACCTTTTTGCTCGTCTAGCAATG
ACTGTCCCGCGATTAAGGGGGGTGG
■■Homology search results ■■ -
sp_hit_id Q9ET30
Definition sp|Q9ET30|TM9S3_MOUSE Transmembrane 9 superfamily member 3 OS=Mus musculus
Align length 22
Score (bit) 28.1
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960043|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F09, 5'
         (265 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ET30|TM9S3_MOUSE Transmembrane 9 superfamily member 3 OS=Mu...    28   0.43 
sp|Q9HD45|TM9S3_HUMAN Transmembrane 9 superfamily member 3 OS=Ho...    28   0.56 

>sp|Q9ET30|TM9S3_MOUSE Transmembrane 9 superfamily member 3 OS=Mus
           musculus GN=Tm9sf3 PE=2 SV=1
          Length = 587

 Score = 28.1 bits (61), Expect(2) = 0.43
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 171 LGSYDFRGEIYDYISLPFCSSS 236
           +G Y  R E Y Y SLPFC  S
Sbjct: 46  VGPYHNRQETYKYFSLPFCVGS 67



 Score = 25.4 bits (54), Expect(2) = 0.43
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = +2

Query: 77  AVIVFFVRSSLASDYDSLYADDEKMEVWVNEVG 175
           A+++  +  + + +++  Y D E++ +W+N VG
Sbjct: 15  ALLLLLLPRARSDEHEHTYQDKEEVVLWMNTVG 47


>sp|Q9HD45|TM9S3_HUMAN Transmembrane 9 superfamily member 3 OS=Homo
           sapiens GN=TM9SF3 PE=1 SV=2
          Length = 589

 Score = 28.1 bits (61), Expect(2) = 0.56
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 171 LGSYDFRGEIYDYISLPFCSSS 236
           +G Y  R E Y Y SLPFC  S
Sbjct: 48  VGPYHNRQETYKYFSLPFCVGS 69



 Score = 25.0 bits (53), Expect(2) = 0.56
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +2

Query: 80  VIVFFVRSSLASDYDSLYADDEKMEVWVNEVG 175
           +++  +  + A +++  Y D E++ +W+N VG
Sbjct: 18  LLLLLLPRTRADEHEHTYQDKEEVVLWMNTVG 49
tr_hit_id Q6ZI33
Definition tr|Q6ZI33|Q6ZI33_ORYSJ Os02g0552000 protein OS=Oryza sativa subsp. japonica
Align length 34
Score (bit) 34.3
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960043|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F09, 5'
         (265 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6ZI33|Q6ZI33_ORYSJ Os02g0552000 protein OS=Oryza sativa subs...    34   0.001
tr|B8AJE2|B8AJE2_ORYSI Putative uncharacterized protein OS=Oryza...    34   0.001
tr|A3A7X3|A3A7X3_ORYSJ Putative uncharacterized protein OS=Oryza...    34   0.001
tr|Q940G0|Q940G0_ARATH Endomembrane protein EMP70 precusor isolo...    34   0.011
tr|O04091|O04091_ARATH Endomembrane protein EMP70 precusor isolo...    34   0.011
tr|A5BNX7|A5BNX7_VITVI Putative uncharacterized protein OS=Vitis...    31   0.11 
tr|A7QLZ5|A7QLZ5_VITVI Chromosome chr18 scaffold_122, whole geno...    31   0.11 
tr|A7QCN1|A7QCN1_VITVI Chromosome chr12 scaffold_78, whole genom...    32   0.11 
tr|A7SCC5|A7SCC5_NEMVE Predicted protein OS=Nematostella vectens...    31   0.19 
tr|A9U2F6|A9U2F6_PHYPA Predicted protein OS=Physcomitrella paten...    29   0.68 
tr|B7QBL1|B7QBL1_IXOSC Endosomal membrane protein EMP70, putativ...    29   0.87 
tr|A8JAK4|A8JAK4_CHLRE EMP/nonaspanin domain family protein OS=C...    30   1.1  
tr|Q95Y24|Q95Y24_CAEEL Putative uncharacterized protein Y41D4A.4...    28   1.1  
tr|B5X1L2|B5X1L2_SALSA Transmembrane 9 superfamily member 3 OS=S...    28   1.4  
tr|A8X6G6|A8X6G6_CAEBR Putative uncharacterized protein OS=Caeno...    28   1.9  
tr|A8PYY1|A8PYY1_BRUMA Transmembrane 9 superfamily protein membe...    28   3.1  
tr|Q7Q985|Q7Q985_ANOGA AGAP004882-PA OS=Anopheles gambiae GN=AGA...    27   4.0  
tr|A0NB39|A0NB39_ANOGA AGAP012660-PA (Fragment) OS=Anopheles gam...    27   5.0  
tr|Q571B0|Q571B0_MOUSE MKIAA4036 protein (Fragment) OS=Mus muscu...    28   5.1  
tr|B6P687|B6P687_BRAFL Putative uncharacterized protein OS=Branc...    29   5.1  
tr|Q8C6F5|Q8C6F5_MOUSE Putative uncharacterized protein OS=Mus m...    28   5.3  
tr|Q5TB57|Q5TB57_HUMAN SM-11044 binding protein (SMBP)(EP70-P-is...    28   6.6  

>tr|Q6ZI33|Q6ZI33_ORYSJ Os02g0552000 protein OS=Oryza sativa subsp.
           japonica GN=OJ1004_H01.22 PE=2 SV=1
          Length = 590

 Score = 34.3 bits (77), Expect(2) = 0.001
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 74  IAVIVFFVRSSLASDYDSLYADDEKMEVWVNEVG 175
           + ++VF    + ASD D  Y  +EK+ +WVN+VG
Sbjct: 16  VLLVVFLAPLAAASDSDHKYQSEEKVMLWVNKVG 49



 Score = 31.6 bits (70), Expect(2) = 0.001
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 KLGSYDFRGEIYDYISLPFCSSSNDCPAIKGG 263
           K+G Y+   E Y+Y SLPFC  SN+ P  K G
Sbjct: 47  KVGPYNNPQETYNYYSLPFCHPSNN-PVHKWG 77


>tr|B8AJE2|B8AJE2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07622 PE=4 SV=1
          Length = 590

 Score = 34.3 bits (77), Expect(2) = 0.001
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 74  IAVIVFFVRSSLASDYDSLYADDEKMEVWVNEVG 175
           + ++VF    + ASD D  Y  +EK+ +WVN+VG
Sbjct: 16  VLLVVFLAPLAAASDSDHKYQSEEKVMLWVNKVG 49



 Score = 31.6 bits (70), Expect(2) = 0.001
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 KLGSYDFRGEIYDYISLPFCSSSNDCPAIKGG 263
           K+G Y+   E Y+Y SLPFC  SN+ P  K G
Sbjct: 47  KVGPYNNPQETYNYYSLPFCHPSNN-PVHKWG 77


>tr|A3A7X3|A3A7X3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006895 PE=4 SV=1
          Length = 573

 Score = 34.3 bits (77), Expect(2) = 0.001
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 74  IAVIVFFVRSSLASDYDSLYADDEKMEVWVNEVG 175
           + ++VF    + ASD D  Y  +EK+ +WVN+VG
Sbjct: 16  VLLVVFLAPLAAASDSDHKYQSEEKVMLWVNKVG 49



 Score = 31.6 bits (70), Expect(2) = 0.001
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 KLGSYDFRGEIYDYISLPFCSSSNDCPAIKGG 263
           K+G Y+   E Y+Y SLPFC  SN+ P  K G
Sbjct: 47  KVGPYNNPQETYNYYSLPFCHPSNN-PVHKWG 77


>tr|Q940G0|Q940G0_ARATH Endomembrane protein EMP70 precusor isolog
           (Putative endomembrane protein 70) (At1g10950/T19D16_13)
           OS=Arabidopsis thaliana GN=At1g10950/T19D16.13 PE=2 SV=1
          Length = 589

 Score = 33.9 bits (76), Expect(2) = 0.011
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +2

Query: 59  PSPLQIAVIVFFVRSSL-----ASDYDSLYADDEKMEVWVNEVG 175
           PS    AV+VF +  SL     ASD D  Y  +E++ +WVN+VG
Sbjct: 2   PSSSSAAVLVFLLLVSLLTPTFASDSDHKYQAEEQVTLWVNKVG 45



 Score = 28.9 bits (63), Expect(2) = 0.011
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 168 KLGSYDFRGEIYDYISLPFCSSSND 242
           K+G Y+   E Y+Y SLPFC  S +
Sbjct: 43  KVGPYNNPQETYNYYSLPFCRPSGN 67


>tr|O04091|O04091_ARATH Endomembrane protein EMP70 precusor isolog;
           68664-64364 OS=Arabidopsis thaliana GN=T19D16.13 PE=4
           SV=1
          Length = 589

 Score = 33.9 bits (76), Expect(2) = 0.011
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +2

Query: 59  PSPLQIAVIVFFVRSSL-----ASDYDSLYADDEKMEVWVNEVG 175
           PS    AV+VF +  SL     ASD D  Y  +E++ +WVN+VG
Sbjct: 2   PSSSSAAVLVFLLLVSLLTPTFASDSDHKYQAEEQVTLWVNKVG 45



 Score = 28.9 bits (63), Expect(2) = 0.011
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 168 KLGSYDFRGEIYDYISLPFCSSSND 242
           K+G Y+   E Y+Y SLPFC  S +
Sbjct: 43  KVGPYNNPQETYNYYSLPFCRPSGN 67


>tr|A5BNX7|A5BNX7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037096 PE=4 SV=1
          Length = 600

 Score = 31.2 bits (69), Expect(2) = 0.11
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 68  LQIAVIVFFVRSSLASDYDSLYADDEKMEVWVNEVG 175
           L + ++  F   + AS+ D  Y  DE++ +WVN+VG
Sbjct: 10  LLLLLVSLFALLAFASESDHKYQTDEQVTLWVNKVG 45



 Score = 28.1 bits (61), Expect(2) = 0.11
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 168 KLGSYDFRGEIYDYISLPFC 227
           K+G Y+   E Y+Y SLPFC
Sbjct: 43  KVGPYNNPQETYNYFSLPFC 62


>tr|A7QLZ5|A7QLZ5_VITVI Chromosome chr18 scaffold_122, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001846001
           PE=4 SV=1
          Length = 589

 Score = 31.2 bits (69), Expect(2) = 0.11
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 68  LQIAVIVFFVRSSLASDYDSLYADDEKMEVWVNEVG 175
           L + ++  F   + AS+ D  Y  DE++ +WVN+VG
Sbjct: 10  LLLLLVSLFALLAFASESDHKYQTDEQVTLWVNKVG 45



 Score = 28.1 bits (61), Expect(2) = 0.11
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 168 KLGSYDFRGEIYDYISLPFC 227
           K+G Y+   E Y+Y SLPFC
Sbjct: 43  KVGPYNNPQETYNYFSLPFC 62


>tr|A7QCN1|A7QCN1_VITVI Chromosome chr12 scaffold_78, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035476001
           PE=4 SV=1
          Length = 567

 Score = 31.6 bits (70), Expect(2) = 0.11
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 68  LQIAVIVFFVRSSLASDYDSLYADDEKMEVWVNEVG 175
           L +A+++    +S ASDYD  Y  +E + +WVN+VG
Sbjct: 15  LYLALLLLLSPAS-ASDYDHKYQQNEPVTLWVNKVG 49



 Score = 27.7 bits (60), Expect(2) = 0.11
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 168 KLGSYDFRGEIYDYISLPFC 227
           K+G Y+   E Y+Y SLPFC
Sbjct: 47  KVGPYNNPQETYNYYSLPFC 66


>tr|A7SCC5|A7SCC5_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g188125 PE=4 SV=1
          Length = 583

 Score = 30.8 bits (68), Expect(2) = 0.19
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +2

Query: 80  VIVFFVRSSLASDYDSLYADDEKMEVWVNEVG 175
           + +  ++ S+A ++D +Y D E++ +W+N VG
Sbjct: 12  LFILALQGSIADEHDHIYKDAEEVVLWMNTVG 43



 Score = 27.7 bits (60), Expect(2) = 0.19
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 171 LGSYDFRGEIYDYISLPFC 227
           +G Y  R E Y+Y SLPFC
Sbjct: 42  VGPYHNRQETYNYYSLPFC 60


>tr|A9U2F6|A9U2F6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_227713 PE=4 SV=1
          Length = 590

 Score = 29.3 bits (64), Expect(2) = 0.68
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 168 KLGSYDFRGEIYDYISLPFCS 230
           K+G Y+   E Y+Y SLPFCS
Sbjct: 43  KVGPYNNPQETYNYYSLPFCS 63



 Score = 27.3 bits (59), Expect(2) = 0.68
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 68  LQIAVIVFFVRSSLASDYDSLYADDEKMEVWVNEVG 175
           L +A  +  ++   A++YD  Y   + + +WVN+VG
Sbjct: 10  LGVACALVLLQLCSANEYDHRYGKGDPVMLWVNKVG 45