DK960049
Clone id TST39A01NGRL0006_F15
Library
Length 673
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_F15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GTGTGTGTGTGTATGTGTATGTGTGTGTGTGCGTGCGTGTTCGTCTGCGGTGAAGCTTCT
TGGTAAAGCCCCGACTCTCTGCGAACCCTAGGTGGCTCCACAGTCAGTCTTCTGTCGCTG
GCTTCGACACGTTGTGGAGAGATCGCGATTCACAGCTTGCGATTTTCTGTTTACTGCGTG
GGCGTTGCGACGCCATTGTAGATCATTACCTTCGGATTGATTTTTGCGTGGATGGCAGTG
CTAGTGTTGTAGATTTGGCATACGTGTGTGTGTGAGTGACTATACTTTTGCTGTGGGTTT
ACCCCATGTGGAAATGAAAGCCAAGGGACAGGAAGCTGTTGATGATCTGTTGAAAAACAC
TTCCAAAAGCGGCTTGTTTTCATCATTGAAGGCTGAGACAAACACGATTCAGTGGTTACA
TTGGCTTGATATTCTGGACCAGCAAACAAATAGTCAGGGTTTTGGCGGCTTGAACTTGGA
CTCAGATTTGGATCTCAAGGGCAATAAGCAACAGGAGAGTCTAAAGTTGGAGTCAAAGAC
AGGTAAAAGCTCTGCTACTAAGGATTCACTAGATTCTAGTGTAAAAAGTGGCAACATGTT
TGGAAGAGGCCTTCAAACTTCTGGAGATAAGTATCCGACATTGAAATTTCCAGAAGCCAT
GGTTGCCATTGCC
■■Homology search results ■■ -
sp_hit_id Q96LB3
Definition sp|Q96LB3|IFT74_HUMAN Intraflagellar transport protein 74 homolog OS=Homo sapiens
Align length 87
Score (bit) 37.4
E-value 0.073
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960049|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F15, 5'
(673 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q96LB3|IFT74_HUMAN Intraflagellar transport protein 74 homolo... 37 0.073
sp|P09186|LOX3_SOYBN Seed lipoxygenase-3 OS=Glycine max GN=LOX1.... 31 6.8
sp|Q9VZV5|CYHR1_DROME Cysteine and histidine-rich protein 1 homo... 31 6.8

>sp|Q96LB3|IFT74_HUMAN Intraflagellar transport protein 74 homolog
OS=Homo sapiens GN=IFT74 PE=2 SV=1
Length = 600

Score = 37.4 bits (85), Expect = 0.073
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +2

Query: 329 QEAVDDLLKNTSKSGLFSSLKAETNTIQWLHWLDILDQQTNSQGFGGLNLDSDLDLKGNK 508
++A DD++KN S L+ +T + L LD L QQ +SQ +L++++
Sbjct: 212 KQATDDIIKNMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEI-AHSQV 270

Query: 509 QQESLKLESKTGKSSATKDSLDSSVKS 589
+QE++ L K + + +D + + KS
Sbjct: 271 KQEAVLLHEKLYELESHRDQMIAEDKS 297


>sp|P09186|LOX3_SOYBN Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3
PE=1 SV=1
Length = 857

Score = 30.8 bits (68), Expect = 6.8
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2

Query: 119 WLRHVVERSRFTACDFLFTAWALRRHCRSLPSD*FLRGW--QC*CCRFGIRVCVSDYTFA 292
W R+ VE S D++FT AL P+D RG + C GIR+ + DY +A
Sbjct: 578 WGRYSVEMSAVVYKDWVFTDQAL-------PADLIKRGMAIEDPSCPHGIRLVIEDYPYA 630

Query: 293 V 295
V
Sbjct: 631 V 631


>sp|Q9VZV5|CYHR1_DROME Cysteine and histidine-rich protein 1 homolog
OS=Drosophila melanogaster GN=CG32486 PE=1 SV=2
Length = 412

Score = 30.8 bits (68), Expect = 6.8
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +2

Query: 482 SDLDLKGNKQQESLKLESKTGKSSATKDSLDSSVKSGNMFGRGLQTSGDKYPTLK 646
S+L L G+ Q + + + SS+T S SSV GN+ G L T G P K
Sbjct: 17 SNLPLLGDNQAVATTSSASSASSSSTSSS-SSSVGGGNVVGVPLDTQGSGEPPAK 70


tr_hit_id Q5RFM5
Definition tr|Q5RFM5|Q5RFM5_PONAB Putative uncharacterized protein DKFZp469F1522 OS=Pongo abelii
Align length 87
Score (bit) 37.7
E-value 0.67
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960049|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F15, 5'
(673 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5RFM5|Q5RFM5_PONAB Putative uncharacterized protein DKFZp469... 38 0.67
tr|Q8IUV3|Q8IUV3_HUMAN IFT74 protein (Fragment) OS=Homo sapiens ... 37 0.87
tr|Q5VY34|Q5VY34_HUMAN Intraflagellar transport 74 homolog (Chla... 37 0.87
tr|Q3B789|Q3B789_HUMAN IFT74 protein OS=Homo sapiens GN=IFT74 PE... 37 0.87
tr|A0PJM7|A0PJM7_HUMAN IFT74 protein (Fragment) OS=Homo sapiens ... 37 0.87
tr|B6FZG1|B6FZG1_9CLOT Putative uncharacterized protein OS=Clost... 36 1.9
tr|A8WPF2|A8WPF2_CAEBR CBR-MEL-11 protein OS=Caenorhabditis brig... 35 4.3
tr|Q4R679|Q4R679_MACFA Testis cDNA, clone: QtsA-18855, similar t... 35 4.3
tr|Q4UCW0|Q4UCW0_THEAN Putative uncharacterized protein OS=Theil... 35 4.3
tr|A7LR08|A7LR08_BACOV Putative uncharacterized protein OS=Bacte... 35 5.6
tr|B0WTU3|B0WTU3_CULQU Valyl-tRNA synthetase OS=Culex quinquefas... 35 5.6
tr|Q4Q1Y6|Q4Q1Y6_LEIMA Protein kinase, putative (Snf1-related pr... 34 7.4
tr|A0BIX2|A0BIX2_PARTE Chromosome undetermined scaffold_11, whol... 34 7.4
tr|A2QYF6|A2QYF6_ASPNC Similarity to proteins with this domain O... 34 9.5
tr|A9B840|A9B840_HERA2 Putative uncharacterized protein OS=Herpe... 34 9.6

>tr|Q5RFM5|Q5RFM5_PONAB Putative uncharacterized protein
DKFZp469F1522 OS=Pongo abelii GN=DKFZp469F1522 PE=2 SV=1
Length = 600

Score = 37.7 bits (86), Expect = 0.67
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +2

Query: 329 QEAVDDLLKNTSKSGLFSSLKAETNTIQWLHWLDILDQQTNSQGFGGLNLDSDLDLKGNK 508
++A DD++KN S L+ +T + L LD L QQ +SQ +L++++
Sbjct: 212 KQAADDIIKNMSLENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEI-AHSQV 270

Query: 509 QQESLKLESKTGKSSATKDSLDSSVKS 589
+QE++ L K + + +D + + KS
Sbjct: 271 KQEAVLLHEKLYELESHRDQMIAEDKS 297


>tr|Q8IUV3|Q8IUV3_HUMAN IFT74 protein (Fragment) OS=Homo sapiens
GN=IFT74 PE=2 SV=3
Length = 503

Score = 37.4 bits (85), Expect = 0.87
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +2

Query: 329 QEAVDDLLKNTSKSGLFSSLKAETNTIQWLHWLDILDQQTNSQGFGGLNLDSDLDLKGNK 508
++A DD++KN S L+ +T + L LD L QQ +SQ +L++++
Sbjct: 212 KQATDDIIKNMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEI-AHSQV 270

Query: 509 QQESLKLESKTGKSSATKDSLDSSVKS 589
+QE++ L K + + +D + + KS
Sbjct: 271 KQEAVLLHEKLYELESHRDQMIAEDKS 297


>tr|Q5VY34|Q5VY34_HUMAN Intraflagellar transport 74 homolog
(Chlamydomonas) OS=Homo sapiens GN=IFT74 PE=2 SV=1
Length = 600

Score = 37.4 bits (85), Expect = 0.87
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +2

Query: 329 QEAVDDLLKNTSKSGLFSSLKAETNTIQWLHWLDILDQQTNSQGFGGLNLDSDLDLKGNK 508
++A DD++KN S L+ +T + L LD L QQ +SQ +L++++
Sbjct: 212 KQATDDIIKNMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEI-AHSQV 270

Query: 509 QQESLKLESKTGKSSATKDSLDSSVKS 589
+QE++ L K + + +D + + KS
Sbjct: 271 KQEAVLLHEKLYELESHRDQMIAEDKS 297


>tr|Q3B789|Q3B789_HUMAN IFT74 protein OS=Homo sapiens GN=IFT74 PE=2
SV=1
Length = 372

Score = 37.4 bits (85), Expect = 0.87
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +2

Query: 329 QEAVDDLLKNTSKSGLFSSLKAETNTIQWLHWLDILDQQTNSQGFGGLNLDSDLDLKGNK 508
++A DD++KN S L+ +T + L LD L QQ +SQ +L++++
Sbjct: 212 KQATDDIIKNMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEI-AHSQV 270

Query: 509 QQESLKLESKTGKSSATKDSLDSSVKS 589
+QE++ L K + + +D + + KS
Sbjct: 271 KQEAVLLHEKLYELESHRDQMIAEDKS 297


>tr|A0PJM7|A0PJM7_HUMAN IFT74 protein (Fragment) OS=Homo sapiens
GN=IFT74 PE=2 SV=1
Length = 578

Score = 37.4 bits (85), Expect = 0.87
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +2

Query: 329 QEAVDDLLKNTSKSGLFSSLKAETNTIQWLHWLDILDQQTNSQGFGGLNLDSDLDLKGNK 508
++A DD++KN S L+ +T + L LD L QQ +SQ +L++++
Sbjct: 190 KQATDDIIKNMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEI-AHSQV 248

Query: 509 QQESLKLESKTGKSSATKDSLDSSVKS 589
+QE++ L K + + +D + + KS
Sbjct: 249 KQEAVLLHEKLYELESHRDQMIAEDKS 275


>tr|B6FZG1|B6FZG1_9CLOT Putative uncharacterized protein
OS=Clostridium hiranonis DSM 13275 GN=CLOHIR_01265 PE=4
SV=1
Length = 341

Score = 36.2 bits (82), Expect = 1.9
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Frame = +2

Query: 266 VCVSDYTFAVGLPHVEMKAKGQEAVDDLLKNTSKSGL--------FSSLKAETNTIQWLH 421
+ VSD VG+PHVEM+ + L++ + S FS +K + +
Sbjct: 128 IAVSDVYLEVGIPHVEMEYNKFRDIKVLMEKNNPSEYPKFDLPEGFSLVKYKDGYEK--D 185

Query: 422 WLDILDQQTNSQGFGGLN------LDSDLDLKGNKQQESLKLESKTGKSSATKDSLDSSV 583
W I QT+ + F ++ D+ LD+ + ++ +++K GK+ AT +S+
Sbjct: 186 WAKI---QTDLEQFESIDEALKCFKDTFLDVTDDVYKKCFFIQNKDGKNIAT-----ASI 237

Query: 584 KSGNMFGRGLQ 616
+GN FG+ LQ
Sbjct: 238 WNGNHFGKTLQ 248


>tr|A8WPF2|A8WPF2_CAEBR CBR-MEL-11 protein OS=Caenorhabditis
briggsae GN=Cbr-mel-11 PE=4 SV=2
Length = 1167

Score = 35.0 bits (79), Expect = 4.3
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Frame = -3

Query: 539 SLTPTLDSPVAYCP*DPNLSP---SSSRQNPDYLFAGPEYQANVTTESCLSQPSMMKTSR 369
++TPT S V P + N+ SSS +N P +VT + ++PS +
Sbjct: 621 TVTPT-PSTVPSTPTNSNVMAATISSSAKNT------PSPAGSVTITATFTKPSSSRNPS 673

Query: 368 FWKCFSTDHQQLPVPWLSFPHGVNPQQKYSHSHTHVCQIYNTSTAIHAKINPKVMIYNGV 189
+ + + Q VPW S H VN TH+ Q+ N S++ + P+V + +
Sbjct: 674 E-ELYRSPSQPTNVPWASLWHNVN-NASTGQIRTHIEQLRNASSSSLSSYYPRVSAFRPI 731

Query: 188 A---TPTQ 174
A TP+Q
Sbjct: 732 ASSRTPSQ 739


>tr|Q4R679|Q4R679_MACFA Testis cDNA, clone: QtsA-18855, similar to
human coiled-coil domain containing 2 (CCDC2), OS=Macaca
fascicularis PE=2 SV=1
Length = 600

Score = 35.0 bits (79), Expect = 4.3
Identities = 22/87 (25%), Positives = 44/87 (50%)
Frame = +2

Query: 329 QEAVDDLLKNTSKSGLFSSLKAETNTIQWLHWLDILDQQTNSQGFGGLNLDSDLDLKGNK 508
++A DD++KN S L+ + + L LD L QQ +SQ ++++++
Sbjct: 212 KQAADDIIKNMSLENQVKYLEMKATNEKLLQELDTLQQQLDSQNMKKESMEAEI-AHSQV 270

Query: 509 QQESLKLESKTGKSSATKDSLDSSVKS 589
+QE++ L K + + +D + + KS
Sbjct: 271 KQEAVLLHEKLYELESHRDQMIAEDKS 297


>tr|Q4UCW0|Q4UCW0_THEAN Putative uncharacterized protein
OS=Theileria annulata GN=TA04860 PE=4 SV=1
Length = 438

Score = 35.0 bits (79), Expect = 4.3
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2

Query: 386 LKAETNTIQWLHWLDILDQQTNSQGFGGLNLDSDLDLKGNKQQESLKLESKTGKSSATK- 562
+ +T I+WL LD+ D+Q + F + D L K NK +S KL+ + K
Sbjct: 144 INLQTIIIEWLELLDLNDKQQRKKLFNFILKDLILLSKNNKLDKSNKLDKLDKSNKLDKL 203

Query: 563 DSLDSSVKSGNM 598
+ L+ S KSG +
Sbjct: 204 EKLEKSGKSGKL 215


>tr|A7LR08|A7LR08_BACOV Putative uncharacterized protein
OS=Bacteroides ovatus ATCC 8483 GN=BACOVA_00233 PE=4
SV=1
Length = 476

Score = 34.7 bits (78), Expect = 5.6
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2

Query: 422 WLDILDQQTN-SQGFGGLNLDSDLDLKGNKQQESLKLESKTGKSSATKDSLDSSVKSGNM 598
W D +D Q +G+G ++D+ L GN++ ++ KL GK +K+ G
Sbjct: 321 WYDGIDNQPELPEGYGVSEYNADIPLVGNQKLQASKL--NPGKIIYSKE----FTFKGGS 374

Query: 599 FGRGLQTSGDKYPTLKFPE 655
G L GDK +K+PE
Sbjct: 375 HGSTLSIIGDKEKNIKYPE 393