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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960050
Clone id TST39A01NGRL0006_F16
Library
Length 632
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_F16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CTCGATGTGCGTTTGGCTTCTTTGCCGTCTCCTAGTCTGGTCTGCCGTTATGATCGCAGT
GACAGATAGTGCCTACTAGGCTTGAAGTTGGCGGAATGGTGGAAGTATGCTGGTCGCTTT
TGAGGCAACTTCTGACATATTTGACATGCTGCCTTGTATCATCTCTCTGTGGTTAATGTA
AAGTTCTGTTGTTCTACATGCGATCCTTCCCCTATGGGTGCGCTCACGGGGTGGATCCAT
AGTAATGGAAAAAGAGTTTTTTGTGTAGGGAGGGGGGCTCTACCCCCTCCTTGGTGTCGG
GCTCCTGTTTATATTGTGTGCATGTGGTTGGGTTCTTTTGCTGGTTTCTCATATATTTCC
GTGTTTACATGGTCTTTGAGCGTGGACTTGTTGGTTGTGTGCAGGCTTCTGTTCATTTAC
AGCCCATATATAGTGAAACATGGGATTTGTGTCAGAGGATAGTGTGACATCTTCATCGAA
TGATGCAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGCATAATACTTTGCTTTGGACCTATATTGGAACTATAGTGTTTGC
TGTGAAGAGATTGAGATTAGGATTTGTTTTGC
■■Homology search results ■■ -
sp_hit_id P26358
Definition sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens
Align length 46
Score (bit) 32.7
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960050|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F16, 5'
         (632 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Ho...    33   1.6  
sp|Q9WVT0|GP116_RAT Probable G-protein coupled receptor 116 OS=R...    32   2.7  
sp|Q8IZF2|GP116_HUMAN Probable G-protein coupled receptor 116 OS...    31   4.6  
sp|Q8IZF3|GP115_HUMAN Probable G-protein coupled receptor 115 OS...    31   6.1  
sp|P39398|YJJL_ECOLI Inner membrane transport protein yjjL OS=Es...    30   7.9  

>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo
           sapiens GN=DNMT1 PE=1 SV=2
          Length = 1616

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -2

Query: 400 TQPTSPRSKTM*TRKYMRNQQKNPTTCTQ---YKQEPDTKEGVEPP 272
           T P  P  K M   K + N + +P  C Q   Y  +PD K G  PP
Sbjct: 327 TTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYLDDPDLKYGQHPP 372


>sp|Q9WVT0|GP116_RAT Probable G-protein coupled receptor 116 OS=Rattus
            norvegicus GN=Gpr116 PE=1 SV=1
          Length = 1349

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 25/86 (29%), Positives = 36/86 (41%)
 Frame = +1

Query: 160  HLSVVNVKFCCSTCDPSPMGALTGWIHSNGKRVFCVGRGALPPPWCRAPVYIVCMWLGSF 339
            H+ +VN+  C    D      + G IH         G   L    C A  +        F
Sbjct: 1054 HICIVNIALCLLIADI--WFIVAGAIHD--------GHYPLNETACVAATF--------F 1095

Query: 340  AGFSYISVFTWSLSVDLLVVCRLLFI 417
              F Y+SVF W L++ L++  RL+FI
Sbjct: 1096 IHFFYLSVFFWMLTLGLMLFYRLIFI 1121


>sp|Q8IZF2|GP116_HUMAN Probable G-protein coupled receptor 116 OS=Homo
            sapiens GN=GPR116 PE=1 SV=2
          Length = 1346

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 319  CMWLGSFAGFSYISVFTWSLSVDLLVVCRLLFI 417
            C+    F  F Y+SVF W L++ L++  RL+FI
Sbjct: 1086 CVAATFFIHFFYLSVFFWMLTLGLMLFYRLVFI 1118


>sp|Q8IZF3|GP115_HUMAN Probable G-protein coupled receptor 115
           OS=Homo sapiens GN=GPR115 PE=2 SV=2
          Length = 695

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 298 RAPVYIVCMWLGSFAGFSYISVFTWSLSVDLLVVCRLLFIY 420
           +A  Y +C+ +  F+ F Y+S+F W L   LL++  +L I+
Sbjct: 466 KAQDYNMCVAVTFFSHFFYLSLFFWMLFKALLIIYGILVIF 506


>sp|P39398|YJJL_ECOLI Inner membrane transport protein yjjL
           OS=Escherichia coli (strain K12) GN=yjjL PE=1 SV=2
          Length = 453

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 282 TPSLVSGSCLYCVHVVGFFCWFLIYFRV 365
           T  L+ G  L+C+H  G  CW LI+  V
Sbjct: 357 TAVLLIGMALFCIHFAGTSCWGLIHVAV 384
tr_hit_id Q69ZZ8
Definition tr|Q69ZZ8|Q69ZZ8_MOUSE MKIAA0758 protein (Fragment) OS=Mus musculus
Align length 86
Score (bit) 36.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960050|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F16, 5'
         (632 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q69ZZ8|Q69ZZ8_MOUSE MKIAA0758 protein (Fragment) OS=Mus muscu...    36   1.7  
tr|Q316R0|Q316R0_DESDG ABC-type uncharacterized transport system...    36   2.2  
tr|A5EXU9|A5EXU9_DICNV Hypothetical membrane protein OS=Dichelob...    35   4.9  
tr|Q5I746|Q5I746_DICNO Orf379 OS=Dichelobacter nodosus GN=orf379...    35   4.9  
tr|B0FGR1|B0FGR1_CANTR Purine-cytosine permease (Fragment) OS=Ca...    35   4.9  
tr|B0FGR0|B0FGR0_CANTR Purine-cytosine permease (Fragment) OS=Ca...    35   4.9  
tr|B0FGQ9|B0FGQ9_CANTR Purine-cytosine permease (Fragment) OS=Ca...    35   4.9  

>tr|Q69ZZ8|Q69ZZ8_MOUSE MKIAA0758 protein (Fragment) OS=Mus musculus
            GN=Gpr116 PE=2 SV=1
          Length = 1143

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 27/86 (31%), Positives = 38/86 (44%)
 Frame = +1

Query: 160  HLSVVNVKFCCSTCDPSPMGALTGWIHSNGKRVFCVGRGALPPPWCRAPVYIVCMWLGSF 339
            H+ +VN+ FC    D      + G IH         GR  L    C A  +        F
Sbjct: 848  HICIVNIAFCLLIADI--WFIVAGAIHD--------GRYPLNETACVAATF--------F 889

Query: 340  AGFSYISVFTWSLSVDLLVVCRLLFI 417
              F Y+SVF W L++ L++  RL+FI
Sbjct: 890  IHFFYLSVFFWMLTLGLMLFYRLIFI 915


>tr|Q316R0|Q316R0_DESDG ABC-type uncharacterized transport system
           permease component-like OS=Desulfovibrio desulfuricans
           (strain G20) GN=Dde_0285 PE=3 SV=1
          Length = 366

 Score = 35.8 bits (81), Expect = 2.2
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +3

Query: 189 LFYMRSFPYGCAHGVDP**WKKSFLC----REGGSTPSLVSGSCLYCVHVVGFFCWFLIY 356
           LF   SF YG  H + P   K    C    R GG +  L+ G+ L  VHV+      ++ 
Sbjct: 144 LFLAVSFVYGVVHAIGPGHGKAVVFCYFLGRSGGISRGLLMGNLLTSVHVLSA---AVLV 200

Query: 357 FRVYMVFERG 386
           F  +++FE+G
Sbjct: 201 FAAHLLFEQG 210


>tr|A5EXU9|A5EXU9_DICNV Hypothetical membrane protein
           OS=Dichelobacter nodosus (strain VCS1703A) GN=DNO_1037
           PE=4 SV=1
          Length = 379

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 346 FSYISVFTWSLSVDLLVVCRLLFIYSPYIVKHG 444
           F Y++V TW +SVD+L    L FIY  +  K G
Sbjct: 120 FPYVAVITWQISVDVLQFAGLTFIYFSFAKKMG 152


>tr|Q5I746|Q5I746_DICNO Orf379 OS=Dichelobacter nodosus GN=orf379
           PE=4 SV=1
          Length = 379

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 346 FSYISVFTWSLSVDLLVVCRLLFIYSPYIVKHG 444
           F Y++V TW +SVD+L    L FIY  +  K G
Sbjct: 120 FPYVAVITWQISVDVLQFAGLTFIYFSFAKKMG 152


>tr|B0FGR1|B0FGR1_CANTR Purine-cytosine permease (Fragment)
           OS=Candida tropicalis GN=FCY2 PE=4 SV=1
          Length = 463

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +1

Query: 220 ALTGW----IHSNGKRVFCVGRGALPPPWCRAPVYIVCMWLGSFAGFSYISVF-TWSLSV 384
           A  GW    I S+ + +  V  GALPP W    + +VC  L +F G+  I ++  WS   
Sbjct: 106 ACVGWGAVNIMSSAQLLHIVNNGALPP-WAGCLILVVCTVLVTFFGYHVIHIYEKWSWIP 164

Query: 385 DLLV 396
           +L++
Sbjct: 165 NLII 168


>tr|B0FGR0|B0FGR0_CANTR Purine-cytosine permease (Fragment)
           OS=Candida tropicalis GN=FCY2 PE=4 SV=1
          Length = 466

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +1

Query: 220 ALTGW----IHSNGKRVFCVGRGALPPPWCRAPVYIVCMWLGSFAGFSYISVF-TWSLSV 384
           A  GW    I S+ + +  V  GALPP W    + +VC  L +F G+  I ++  WS   
Sbjct: 109 ACVGWGAVNIMSSAQLLHIVNNGALPP-WAGCLILVVCTVLVTFFGYHVIHIYEKWSWIP 167

Query: 385 DLLV 396
           +L++
Sbjct: 168 NLII 171


>tr|B0FGQ9|B0FGQ9_CANTR Purine-cytosine permease (Fragment)
           OS=Candida tropicalis GN=FCY2 PE=4 SV=1
          Length = 465

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +1

Query: 220 ALTGW----IHSNGKRVFCVGRGALPPPWCRAPVYIVCMWLGSFAGFSYISVF-TWSLSV 384
           A  GW    I S+ + +  V  GALPP W    + +VC  L +F G+  I ++  WS   
Sbjct: 108 ACVGWGAVNIMSSAQLLHIVNNGALPP-WAGCLILVVCTVLVTFFGYHVIHIYEKWSWIP 166

Query: 385 DLLV 396
           +L++
Sbjct: 167 NLII 170