DK960055 |
Clone id |
TST39A01NGRL0006_F21 |
Library |
TST39 |
Length |
661 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_F21. 5' end sequence. |
Accession |
DK960055 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL237Contig1 |
Sequence |
CGACTGTACAGAGAAATTTGCTTGTATCTGCATTTCCTCTCCTCGTGGAAGGACCTCCCG ATTGTTATCGCAGGTGATAGTTTGCGGGCCGCAGTTGAGTTTCGTGTATCAAGGGTAGTA TGAATGCGAAATTCAACAATCGCTCGTCAATCGAACCTGTGGATGAAGAAACCTGCGTAT CTCCACTCGAACCTAAACTGCATTGAAAATTTTGATTTGCCAGCAGGTCGTCTGCTGGTC CTTGTAAGCTTTTGAAGATTTCATGTTCACATTCAGCCATGGAGATGAAAGACAGACATT CTTCTTTTTTAGCAATGGAGAAGTCATCATCTTTGCTGGAGGCCATGGTGGATTTGTCTG CCAATATGGTGCCTTTGTGGGTAGCTGTACTGATCGGCCTTTTTGTAGGATGGATATGGA AGCCACGGTGGGTGAGCTTACTGTTTCTAGGGGTAAGAGGCAGGCACAGACTCGTCTGGA CTAGTCCTCCAGGCCTAGGTGTGCGGCGCTTCTGGATTGCATTGACTGCTTCAGTGACCG CCTTTCAAATGCTGAAAGAATGCTGGTTGAAATTTAAAGCATGGAAATGGCCTCAGACTC AGTCTCCTGAAGGAATTGAAGAGAGGGAAAGGCCACTTCAGGCTACTGACAGCGGTGCTG T |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q04003 |
Definition |
sp|Q04003|SAS4_YEAST Something about silencing protein 4 OS=Saccharomyces cerevisiae |
Align length |
82 |
Score (bit) |
33.9 |
E-value |
0.79 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TCG3 |
Definition |
tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
89 |
Score (bit) |
119.0 |
E-value |
2.0e-25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960055|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_F21, 5' (661 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella paten... 119 2e-25 tr|A7NX17|A7NX17_VITVI Chromosome chr5 scaffold_2, whole genome ... 105 2e-21 tr|A5BHP5|A5BHP5_VITVI Putative uncharacterized protein OS=Vitis... 105 2e-21 tr|A9NUT1|A9NUT1_PICSI Putative uncharacterized protein OS=Picea... 104 4e-21 tr|A9U359|A9U359_PHYPA Predicted protein OS=Physcomitrella paten... 103 7e-21 tr|Q944M2|Q944M2_ARATH AT4g14500/dl3290w (At4g14500) (Expressed ... 98 4e-19 tr|O23306|O23306_ARATH Putative uncharacterized protein dl3290w ... 98 4e-19 tr|B4G219|B4G219_MAIZE Putative uncharacterized protein OS=Zea m... 87 7e-16 tr|Q9LS84|Q9LS84_ARATH Membrane related protein-like (Putative u... 86 2e-15 tr|Q93ZZ1|Q93ZZ1_ARATH Putative uncharacterized protein At3g2308... 86 2e-15 tr|B8B7W5|B8B7W5_ORYSI Putative uncharacterized protein OS=Oryza... 83 2e-14 tr|A3BHA2|A3BHA2_ORYSJ Putative uncharacterized protein OS=Oryza... 81 5e-14 tr|Q2V3T7|Q2V3T7_ARATH Uncharacterized protein At3g23080.2 OS=Ar... 68 4e-10 tr|Q7XTJ2|Q7XTJ2_ORYSJ Os04g0119500 protein OS=Oryza sativa subs... 45 0.005 tr|Q6ZXK5|Q6ZXK5_ORYSJ Membrane related protein OS=Oryza sativa ... 45 0.005 tr|A2XPT7|A2XPT7_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.005 tr|Q9XIR9|Q9XIR9_ARATH Putative membrane related protein OS=Arab... 44 0.007 tr|Q9XF49|Q9XF49_ARATH Membrane related protein CP5 OS=Arabidops... 44 0.007 tr|Q8L7P8|Q8L7P8_ARATH Membrane related protein CP5, putative OS... 44 0.007 tr|B7FHR4|B7FHR4_MEDTR Putative uncharacterized protein (Fragmen... 44 0.009 tr|Q01MR5|Q01MR5_ORYSA H0716A07.8 protein OS=Oryza sativa GN=H07... 44 0.012 tr|B4G0M5|B4G0M5_MAIZE Putative uncharacterized protein OS=Zea m... 43 0.015 tr|Q9FK24|Q9FK24_ARATH Membrane related protein-like OS=Arabidop... 43 0.020 tr|Q8LAQ0|Q8LAQ0_ARATH Membrane related protein-like OS=Arabidop... 43 0.020 tr|B6TV06|B6TV06_MAIZE CP5 OS=Zea mays PE=2 SV=1 43 0.020 tr|B6T237|B6T237_MAIZE CP5 OS=Zea mays PE=2 SV=1 43 0.020 tr|Q6Z705|Q6Z705_ORYSJ Putative membrane related protein CP5 OS=... 42 0.044 tr|B8AGY6|B8AGY6_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.044 tr|A3A2N2|A3A2N2_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.044 tr|Q5R0F2|Q5R0F2_IDILO Carbon starvation regulatory protein OS=I... 39 0.28
>tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_143492 PE=4 SV=1 Length = 435
Score = 119 bits (298), Expect = 2e-25 Identities = 48/89 (53%), Positives = 64/89 (71%) Frame = +3
Query: 327 SSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLGVR 506 S+++E D+ MVP+WVAV +GL VGW WKP+W S+L +G++ R RL+W +PPG G R Sbjct: 16 SAVMETAADMLLGMVPIWVAVAVGLLVGWSWKPQWASILLMGIKSRPRLIWGTPPGFGAR 75
Query: 507 RFWIALTASVTAFQMLKECWLKFKAWKWP 593 RFW+A+ A V+AF M KE W F AW WP Sbjct: 76 RFWLAIMA-VSAFPMWKEAWKSFSAWMWP 103
>tr|A7NX17|A7NX17_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020141001 PE=4 SV=1 Length = 439
Score = 105 bits (262), Expect = 2e-21 Identities = 44/98 (44%), Positives = 66/98 (67%) Frame = +3
Query: 285 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 464 M+D F+ K S++E ++D+ VP+WVAV+IGL +GW W+PRW L++LG+R + Sbjct: 1 MEDIFFDFMDFMKKPSVIETLLDILLCAVPIWVAVMIGLVIGWSWRPRWTGLVYLGLRSK 60
Query: 465 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECWLKFK 578 R +WT+PPG G RR W+A TA ++AF + + W FK Sbjct: 61 FRFLWTAPPGFGARRLWLAFTA-LSAFSVGRTIWSNFK 97
>tr|A5BHP5|A5BHP5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018339 PE=4 SV=1 Length = 410
Score = 105 bits (262), Expect = 2e-21 Identities = 44/98 (44%), Positives = 66/98 (67%) Frame = +3
Query: 285 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 464 M+D F+ K S++E ++D+ VP+WVAV+IGL +GW W+PRW L++LG+R + Sbjct: 1 MEDIFFDFMDFMKKPSVIETLLDILLCAVPIWVAVMIGLVIGWSWRPRWTGLVYLGLRSK 60
Query: 465 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECWLKFK 578 R +WT+PPG G RR W+A TA ++AF + + W FK Sbjct: 61 FRFLWTAPPGFGARRLWLAFTA-LSAFSVGRTIWSNFK 97
>tr|A9NUT1|A9NUT1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 426
Score = 104 bits (260), Expect = 4e-21 Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 4/104 (3%) Frame = +3
Query: 321 KSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLG 500 + +L+E VD++ +VPLW+AV+IGL VGW WKPRW L+ LG++ + R WT+PPG G Sbjct: 13 RKPALVETFVDIAMCLVPLWLAVMIGLLVGWAWKPRWAGLICLGMKSKIRFAWTAPPGFG 72
Query: 501 VRRFWIALTASVTAFQMLKECWLKFKAWKW----PQTQSPEGIE 620 RR W A+TA +TAF +L++ W F K P Q P E Sbjct: 73 ARRLWFAITA-LTAFPVLRKLWSNFSDSKAKGDDPTLQEPASTE 115
>tr|A9U359|A9U359_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_155288 PE=4 SV=1 Length = 429
Score = 103 bits (258), Expect = 7e-21 Identities = 47/101 (46%), Positives = 63/101 (62%) Frame = +3
Query: 330 SLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLGVRR 509 +++E D+ MVP WVA IGL VGW+WKP+W S+L LGV+ R RLVW +PPG G RR Sbjct: 17 AVMETAADMMFCMVPFWVATAIGLLVGWLWKPQWASILLLGVKSRPRLVWDTPPGFGARR 76
Query: 510 FWIALTASVTAFQMLKECWLKFKAWKWPQTQSPEGIEERER 632 FW+A+ A ++A M KE W F + S +ER + Sbjct: 77 FWLAIMA-LSALPMWKEAWKSFNVLECSSMCSEPDAKERTK 116
>tr|Q944M2|Q944M2_ARATH AT4g14500/dl3290w (At4g14500) (Expressed protein) OS=Arabidopsis thaliana GN=At4g14500 PE=2 SV=1 Length = 433
Score = 98.2 bits (243), Expect = 4e-19 Identities = 41/94 (43%), Positives = 60/94 (63%) Frame = +3
Query: 285 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 464 M + + L K+ S E VD+ VP+W+AV+IGL +GW W+PRW L++LG R + Sbjct: 1 MDETYFDLLNFFKNPSFTETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLIYLGFRSK 60
Query: 465 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECW 566 R +WT+PPG G RR W+A TA ++AF + + W Sbjct: 61 LRFLWTAPPGFGARRLWLAFTA-LSAFSVCRTIW 93
>tr|O23306|O23306_ARATH Putative uncharacterized protein dl3290w (Putative uncharacterized protein AT4g14500) OS=Arabidopsis thaliana GN=dl3290w PE=4 SV=1 Length = 420
Score = 98.2 bits (243), Expect = 4e-19 Identities = 41/94 (43%), Positives = 60/94 (63%) Frame = +3
Query: 285 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 464 M + + L K+ S E VD+ VP+W+AV+IGL +GW W+PRW L++LG R + Sbjct: 1 MDETYFDLLNFFKNPSFTETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLIYLGFRSK 60
Query: 465 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECW 566 R +WT+PPG G RR W+A TA ++AF + + W Sbjct: 61 LRFLWTAPPGFGARRLWLAFTA-LSAFSVCRTIW 93
>tr|B4G219|B4G219_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 438
Score = 87.4 bits (215), Expect = 7e-16 Identities = 39/74 (52%), Positives = 51/74 (68%) Frame = +3
Query: 309 LAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSP 488 +A+ + ++ E VD+ VP+W AV+IGL VGW W+PRW LLFLG+R R R++W P Sbjct: 9 VALLQRPAVAEMAVDVLLCAVPIWAAVMIGLVVGWSWRPRWTGLLFLGLRSRLRILWV-P 67
Query: 489 PGLGVRRFWIALTA 530 PGLG RR W A TA Sbjct: 68 PGLGARRLWFACTA 81
>tr|Q9LS84|Q9LS84_ARATH Membrane related protein-like (Putative uncharacterized protein At3g23080) OS=Arabidopsis thaliana GN=At3g23080 PE=2 SV=1 Length = 419
Score = 86.3 bits (212), Expect = 2e-15 Identities = 38/82 (46%), Positives = 53/82 (64%) Frame = +3
Query: 306 FLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTS 485 F+ S+ E VD+ VP+WV V+IGL +GW W+PRW SL++LG R + R + T Sbjct: 4 FMDFFNKPSVTETFVDVLLCAVPIWVTVMIGLLIGWSWRPRWTSLVYLGFRSKLRFLCTV 63
Query: 486 PPGLGVRRFWIALTASVTAFQM 551 PPG G RR W+A TA ++AF + Sbjct: 64 PPGFGARRIWLAFTA-LSAFSV 84
>tr|Q93ZZ1|Q93ZZ1_ARATH Putative uncharacterized protein At3g23080 OS=Arabidopsis thaliana GN=At3g23080 PE=2 SV=1 Length = 419
Score = 86.3 bits (212), Expect = 2e-15 Identities = 38/82 (46%), Positives = 53/82 (64%) Frame = +3
Query: 306 FLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTS 485 F+ S+ E VD+ VP+WV V+IGL +GW W+PRW SL++LG R + R + T Sbjct: 4 FMDFFNKPSVTETFVDVLLCAVPIWVTVMIGLLIGWSWRPRWTSLVYLGFRSKLRFLCTV 63
Query: 486 PPGLGVRRFWIALTASVTAFQM 551 PPG G RR W+A TA ++AF + Sbjct: 64 PPGFGARRIWLAFTA-LSAFSV 84
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