DK960055
Clone id TST39A01NGRL0006_F21
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_F21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CGACTGTACAGAGAAATTTGCTTGTATCTGCATTTCCTCTCCTCGTGGAAGGACCTCCCG
ATTGTTATCGCAGGTGATAGTTTGCGGGCCGCAGTTGAGTTTCGTGTATCAAGGGTAGTA
TGAATGCGAAATTCAACAATCGCTCGTCAATCGAACCTGTGGATGAAGAAACCTGCGTAT
CTCCACTCGAACCTAAACTGCATTGAAAATTTTGATTTGCCAGCAGGTCGTCTGCTGGTC
CTTGTAAGCTTTTGAAGATTTCATGTTCACATTCAGCCATGGAGATGAAAGACAGACATT
CTTCTTTTTTAGCAATGGAGAAGTCATCATCTTTGCTGGAGGCCATGGTGGATTTGTCTG
CCAATATGGTGCCTTTGTGGGTAGCTGTACTGATCGGCCTTTTTGTAGGATGGATATGGA
AGCCACGGTGGGTGAGCTTACTGTTTCTAGGGGTAAGAGGCAGGCACAGACTCGTCTGGA
CTAGTCCTCCAGGCCTAGGTGTGCGGCGCTTCTGGATTGCATTGACTGCTTCAGTGACCG
CCTTTCAAATGCTGAAAGAATGCTGGTTGAAATTTAAAGCATGGAAATGGCCTCAGACTC
AGTCTCCTGAAGGAATTGAAGAGAGGGAAAGGCCACTTCAGGCTACTGACAGCGGTGCTG
T
■■Homology search results ■■ -
sp_hit_id Q04003
Definition sp|Q04003|SAS4_YEAST Something about silencing protein 4 OS=Saccharomyces cerevisiae
Align length 82
Score (bit) 33.9
E-value 0.79
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960055|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F21, 5'
(661 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q04003|SAS4_YEAST Something about silencing protein 4 OS=Sacc... 34 0.79
sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04... 32 2.3
sp|Q83Z42|OPGH_XANEU Glucans biosynthesis glucosyltransferase H ... 31 5.1
sp|Q3BXV7|OPGH_XANC5 Glucans biosynthesis glucosyltransferase H ... 31 5.1
sp|Q8PPR7|OPGH_XANAC Glucans biosynthesis glucosyltransferase H ... 31 5.1
sp|O18175|SRE33_CAEEL Serpentine receptor class epsilon-33 OS=Ca... 31 6.6
sp|Q86V87|F16B2_HUMAN UPF0518 protein FAM160B2 OS=Homo sapiens G... 31 6.6
sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Sola... 30 8.6
sp|O54935|XRCC1_CRIGR DNA repair protein XRCC1 OS=Cricetulus gri... 30 8.7

>sp|Q04003|SAS4_YEAST Something about silencing protein 4
OS=Saccharomyces cerevisiae GN=SAS4 PE=1 SV=1
Length = 481

Score = 33.9 bits (76), Expect = 0.79
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = -1

Query: 442 SKLTHRGFHIHPTKRPISTATHKGTILADKSTMASS--KDDDFSIAKKEECLSFISMAEC 269
S++ H+ +K + H K M S + D I KK E ++ +++
Sbjct: 51 SRINPNAGHLRKSKSCFTVDEHVDETRCQKPVMKSPFMSNVDDEIKKKRETITKMTLEIE 110

Query: 268 EHEIFKSLQGPADDLLANQNFQ 203
HE+ ++++ P DDLL + +Q
Sbjct: 111 HHELSQNIRKPTDDLLPDSTYQ 132


>sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04
OS=Schizosaccharomyces pombe GN=SPBC902.04 PE=1 SV=1
Length = 589

Score = 32.3 bits (72), Expect = 2.3
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1

Query: 427 RGFHIHPTKRPISTATHKGTILADKSTMASSKD-DDFSIAKKEECLSFISMAECEHE 260
+GFH RP A+HK +D S + SS+D D S+ + EE I + +HE
Sbjct: 316 KGFH----NRPKKFASHKSPTTSDSSNVESSEDVDPASLLQNEEFHKLIEERQRQHE 368


>sp|Q83Z42|OPGH_XANEU Glucans biosynthesis glucosyltransferase H
OS=Xanthomonas euvesicatoria GN=opgH PE=3 SV=1
Length = 643

Score = 31.2 bits (69), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +3

Query: 480 TSPPGLGVRRFWIA----LTASVTAFQMLKECW 566
TSPPG+GVRRF++ T ++ + ML W
Sbjct: 52 TSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLW 84


>sp|Q3BXV7|OPGH_XANC5 Glucans biosynthesis glucosyltransferase H
OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
GN=opgH PE=3 SV=1
Length = 645

Score = 31.2 bits (69), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +3

Query: 480 TSPPGLGVRRFWIA----LTASVTAFQMLKECW 566
TSPPG+GVRRF++ T ++ + ML W
Sbjct: 52 TSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLW 84


>sp|Q8PPR7|OPGH_XANAC Glucans biosynthesis glucosyltransferase H
OS=Xanthomonas axonopodis pv. citri GN=opgH PE=3 SV=2
Length = 645

Score = 31.2 bits (69), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +3

Query: 480 TSPPGLGVRRFWIA----LTASVTAFQMLKECW 566
TSPPG+GVRRF++ T ++ + ML W
Sbjct: 52 TSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLW 84


>sp|O18175|SRE33_CAEEL Serpentine receptor class epsilon-33
OS=Caenorhabditis elegans GN=sre-33 PE=2 SV=2
Length = 359

Score = 30.8 bits (68), Expect = 6.6
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3

Query: 354 LSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLGVRRFWIALTAS 533
L+ M +W ++IG F+ ++ + + L F G H +WT+ PG + L AS
Sbjct: 66 LALPMFGMWYELIIGKFITIAYRLKLLGLDF--ELGEHTAIWTNDPGK------VLLVAS 117

Query: 534 VTAFQML 554
+ ++L
Sbjct: 118 LNGLELL 124


>sp|Q86V87|F16B2_HUMAN UPF0518 protein FAM160B2 OS=Homo sapiens
GN=FAM160B2 PE=2 SV=2
Length = 743

Score = 30.8 bits (68), Expect = 6.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3

Query: 540 AFQMLKECWLKFKAWKWPQTQSPEGIEERERP 635
A+ + +EC + +W WP T +P E ERP
Sbjct: 566 AYGLFQECSSRVASWGWPLTPTPLDPHEPERP 597


>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum
lycopersicum GN=CURL3 PE=1 SV=1
Length = 1207

Score = 30.4 bits (67), Expect = 8.6
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Frame = +3

Query: 228 SSAGPCKLLKISCSHSAMEMKDRHSSFLAMEKS--------SSLLEAMVDLSANM 368
SS GPC +SC +S + D ++FL+++ S S LE++V +AN+
Sbjct: 66 SSTGPCSFTGVSCKNSRVSSIDLSNTFLSVDFSLVTSYLLPLSNLESLVLKNANL 120


>sp|O54935|XRCC1_CRIGR DNA repair protein XRCC1 OS=Cricetulus
griseus GN=XRCC1 PE=2 SV=1
Length = 633

Score = 30.4 bits (67), Expect = 8.7
Identities = 25/90 (27%), Positives = 37/90 (41%)
Frame = -1

Query: 421 FHIHPTKRPISTATHKGTILADKSTMASSKDDDFSIAKKEECLSFISMAECEHEIFKSLQ 242
FH P K T + KGT+ ++DD + + K L F + + S +
Sbjct: 153 FHSPPDKDEAETPSQKGTV-TKLGQFRVKEEDDGASSLKPGALFFSRINKTSS---ASAR 208

Query: 241 GPADDLLANQNFQCSLGSSGDTQVSSSTGS 152
GPA A Q S +S + VS + GS
Sbjct: 209 GPAGPSYAAATLQASNATSSASSVSKALGS 238


tr_hit_id A9TCG3
Definition tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 89
Score (bit) 119.0
E-value 2.0e-25
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960055|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F21, 5'
(661 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella paten... 119 2e-25
tr|A7NX17|A7NX17_VITVI Chromosome chr5 scaffold_2, whole genome ... 105 2e-21
tr|A5BHP5|A5BHP5_VITVI Putative uncharacterized protein OS=Vitis... 105 2e-21
tr|A9NUT1|A9NUT1_PICSI Putative uncharacterized protein OS=Picea... 104 4e-21
tr|A9U359|A9U359_PHYPA Predicted protein OS=Physcomitrella paten... 103 7e-21
tr|Q944M2|Q944M2_ARATH AT4g14500/dl3290w (At4g14500) (Expressed ... 98 4e-19
tr|O23306|O23306_ARATH Putative uncharacterized protein dl3290w ... 98 4e-19
tr|B4G219|B4G219_MAIZE Putative uncharacterized protein OS=Zea m... 87 7e-16
tr|Q9LS84|Q9LS84_ARATH Membrane related protein-like (Putative u... 86 2e-15
tr|Q93ZZ1|Q93ZZ1_ARATH Putative uncharacterized protein At3g2308... 86 2e-15
tr|B8B7W5|B8B7W5_ORYSI Putative uncharacterized protein OS=Oryza... 83 2e-14
tr|A3BHA2|A3BHA2_ORYSJ Putative uncharacterized protein OS=Oryza... 81 5e-14
tr|Q2V3T7|Q2V3T7_ARATH Uncharacterized protein At3g23080.2 OS=Ar... 68 4e-10
tr|Q7XTJ2|Q7XTJ2_ORYSJ Os04g0119500 protein OS=Oryza sativa subs... 45 0.005
tr|Q6ZXK5|Q6ZXK5_ORYSJ Membrane related protein OS=Oryza sativa ... 45 0.005
tr|A2XPT7|A2XPT7_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.005
tr|Q9XIR9|Q9XIR9_ARATH Putative membrane related protein OS=Arab... 44 0.007
tr|Q9XF49|Q9XF49_ARATH Membrane related protein CP5 OS=Arabidops... 44 0.007
tr|Q8L7P8|Q8L7P8_ARATH Membrane related protein CP5, putative OS... 44 0.007
tr|B7FHR4|B7FHR4_MEDTR Putative uncharacterized protein (Fragmen... 44 0.009
tr|Q01MR5|Q01MR5_ORYSA H0716A07.8 protein OS=Oryza sativa GN=H07... 44 0.012
tr|B4G0M5|B4G0M5_MAIZE Putative uncharacterized protein OS=Zea m... 43 0.015
tr|Q9FK24|Q9FK24_ARATH Membrane related protein-like OS=Arabidop... 43 0.020
tr|Q8LAQ0|Q8LAQ0_ARATH Membrane related protein-like OS=Arabidop... 43 0.020
tr|B6TV06|B6TV06_MAIZE CP5 OS=Zea mays PE=2 SV=1 43 0.020
tr|B6T237|B6T237_MAIZE CP5 OS=Zea mays PE=2 SV=1 43 0.020
tr|Q6Z705|Q6Z705_ORYSJ Putative membrane related protein CP5 OS=... 42 0.044
tr|B8AGY6|B8AGY6_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.044
tr|A3A2N2|A3A2N2_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.044
tr|Q5R0F2|Q5R0F2_IDILO Carbon starvation regulatory protein OS=I... 39 0.28

>tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_143492 PE=4 SV=1
Length = 435

Score = 119 bits (298), Expect = 2e-25
Identities = 48/89 (53%), Positives = 64/89 (71%)
Frame = +3

Query: 327 SSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLGVR 506
S+++E D+ MVP+WVAV +GL VGW WKP+W S+L +G++ R RL+W +PPG G R
Sbjct: 16 SAVMETAADMLLGMVPIWVAVAVGLLVGWSWKPQWASILLMGIKSRPRLIWGTPPGFGAR 75

Query: 507 RFWIALTASVTAFQMLKECWLKFKAWKWP 593
RFW+A+ A V+AF M KE W F AW WP
Sbjct: 76 RFWLAIMA-VSAFPMWKEAWKSFSAWMWP 103


>tr|A7NX17|A7NX17_VITVI Chromosome chr5 scaffold_2, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020141001
PE=4 SV=1
Length = 439

Score = 105 bits (262), Expect = 2e-21
Identities = 44/98 (44%), Positives = 66/98 (67%)
Frame = +3

Query: 285 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 464
M+D F+ K S++E ++D+ VP+WVAV+IGL +GW W+PRW L++LG+R +
Sbjct: 1 MEDIFFDFMDFMKKPSVIETLLDILLCAVPIWVAVMIGLVIGWSWRPRWTGLVYLGLRSK 60

Query: 465 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECWLKFK 578
R +WT+PPG G RR W+A TA ++AF + + W FK
Sbjct: 61 FRFLWTAPPGFGARRLWLAFTA-LSAFSVGRTIWSNFK 97


>tr|A5BHP5|A5BHP5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_018339 PE=4 SV=1
Length = 410

Score = 105 bits (262), Expect = 2e-21
Identities = 44/98 (44%), Positives = 66/98 (67%)
Frame = +3

Query: 285 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 464
M+D F+ K S++E ++D+ VP+WVAV+IGL +GW W+PRW L++LG+R +
Sbjct: 1 MEDIFFDFMDFMKKPSVIETLLDILLCAVPIWVAVMIGLVIGWSWRPRWTGLVYLGLRSK 60

Query: 465 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECWLKFK 578
R +WT+PPG G RR W+A TA ++AF + + W FK
Sbjct: 61 FRFLWTAPPGFGARRLWLAFTA-LSAFSVGRTIWSNFK 97


>tr|A9NUT1|A9NUT1_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 426

Score = 104 bits (260), Expect = 4e-21
Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Frame = +3

Query: 321 KSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLG 500
+ +L+E VD++ +VPLW+AV+IGL VGW WKPRW L+ LG++ + R WT+PPG G
Sbjct: 13 RKPALVETFVDIAMCLVPLWLAVMIGLLVGWAWKPRWAGLICLGMKSKIRFAWTAPPGFG 72

Query: 501 VRRFWIALTASVTAFQMLKECWLKFKAWKW----PQTQSPEGIE 620
RR W A+TA +TAF +L++ W F K P Q P E
Sbjct: 73 ARRLWFAITA-LTAFPVLRKLWSNFSDSKAKGDDPTLQEPASTE 115


>tr|A9U359|A9U359_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_155288 PE=4 SV=1
Length = 429

Score = 103 bits (258), Expect = 7e-21
Identities = 47/101 (46%), Positives = 63/101 (62%)
Frame = +3

Query: 330 SLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLGVRR 509
+++E D+ MVP WVA IGL VGW+WKP+W S+L LGV+ R RLVW +PPG G RR
Sbjct: 17 AVMETAADMMFCMVPFWVATAIGLLVGWLWKPQWASILLLGVKSRPRLVWDTPPGFGARR 76

Query: 510 FWIALTASVTAFQMLKECWLKFKAWKWPQTQSPEGIEERER 632
FW+A+ A ++A M KE W F + S +ER +
Sbjct: 77 FWLAIMA-LSALPMWKEAWKSFNVLECSSMCSEPDAKERTK 116


>tr|Q944M2|Q944M2_ARATH AT4g14500/dl3290w (At4g14500) (Expressed
protein) OS=Arabidopsis thaliana GN=At4g14500 PE=2 SV=1
Length = 433

Score = 98.2 bits (243), Expect = 4e-19
Identities = 41/94 (43%), Positives = 60/94 (63%)
Frame = +3

Query: 285 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 464
M + + L K+ S E VD+ VP+W+AV+IGL +GW W+PRW L++LG R +
Sbjct: 1 MDETYFDLLNFFKNPSFTETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLIYLGFRSK 60

Query: 465 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECW 566
R +WT+PPG G RR W+A TA ++AF + + W
Sbjct: 61 LRFLWTAPPGFGARRLWLAFTA-LSAFSVCRTIW 93


>tr|O23306|O23306_ARATH Putative uncharacterized protein dl3290w
(Putative uncharacterized protein AT4g14500)
OS=Arabidopsis thaliana GN=dl3290w PE=4 SV=1
Length = 420

Score = 98.2 bits (243), Expect = 4e-19
Identities = 41/94 (43%), Positives = 60/94 (63%)
Frame = +3

Query: 285 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 464
M + + L K+ S E VD+ VP+W+AV+IGL +GW W+PRW L++LG R +
Sbjct: 1 MDETYFDLLNFFKNPSFTETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLIYLGFRSK 60

Query: 465 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECW 566
R +WT+PPG G RR W+A TA ++AF + + W
Sbjct: 61 LRFLWTAPPGFGARRLWLAFTA-LSAFSVCRTIW 93


>tr|B4G219|B4G219_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 438

Score = 87.4 bits (215), Expect = 7e-16
Identities = 39/74 (52%), Positives = 51/74 (68%)
Frame = +3

Query: 309 LAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSP 488
+A+ + ++ E VD+ VP+W AV+IGL VGW W+PRW LLFLG+R R R++W P
Sbjct: 9 VALLQRPAVAEMAVDVLLCAVPIWAAVMIGLVVGWSWRPRWTGLLFLGLRSRLRILWV-P 67

Query: 489 PGLGVRRFWIALTA 530
PGLG RR W A TA
Sbjct: 68 PGLGARRLWFACTA 81


>tr|Q9LS84|Q9LS84_ARATH Membrane related protein-like (Putative
uncharacterized protein At3g23080) OS=Arabidopsis
thaliana GN=At3g23080 PE=2 SV=1
Length = 419

Score = 86.3 bits (212), Expect = 2e-15
Identities = 38/82 (46%), Positives = 53/82 (64%)
Frame = +3

Query: 306 FLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTS 485
F+ S+ E VD+ VP+WV V+IGL +GW W+PRW SL++LG R + R + T
Sbjct: 4 FMDFFNKPSVTETFVDVLLCAVPIWVTVMIGLLIGWSWRPRWTSLVYLGFRSKLRFLCTV 63

Query: 486 PPGLGVRRFWIALTASVTAFQM 551
PPG G RR W+A TA ++AF +
Sbjct: 64 PPGFGARRIWLAFTA-LSAFSV 84


>tr|Q93ZZ1|Q93ZZ1_ARATH Putative uncharacterized protein At3g23080
OS=Arabidopsis thaliana GN=At3g23080 PE=2 SV=1
Length = 419

Score = 86.3 bits (212), Expect = 2e-15
Identities = 38/82 (46%), Positives = 53/82 (64%)
Frame = +3

Query: 306 FLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTS 485
F+ S+ E VD+ VP+WV V+IGL +GW W+PRW SL++LG R + R + T
Sbjct: 4 FMDFFNKPSVTETFVDVLLCAVPIWVTVMIGLLIGWSWRPRWTSLVYLGFRSKLRFLCTV 63

Query: 486 PPGLGVRRFWIALTASVTAFQM 551
PPG G RR W+A TA ++AF +
Sbjct: 64 PPGFGARRIWLAFTA-LSAFSV 84