DK960058 |
Clone id |
TST39A01NGRL0006_F24 |
Library |
TST39 |
Length |
644 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_F24. 5' end sequence. |
Accession |
DK960058 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CAGACGCTCTTATGGAGCTTCATTGATGTGAGTACACATAGACATACATACAGACATCTA CAGGCTGCTATGTAGCTCTTTTGATCTGTGTAGGTACATACATACGTGTATGTAGTTCTC TCCATAACACCCGCTTAGCGCTTATGTGTGCGTGCACACATCTCCATACACACAAACACG AAGAAAGCTTCCATGTCATCACCGGCTAGTGGATGGATCTCTTTTTGGGAGCAAAATCTT CTGGGGGATCAGCAGCACCCAGACTTCGAATGGAGTGACCCAGGTCTTGAAGATGCAGCT ATCAAAGGTGACTCCTTCAATATTCAATGCAGCTCTATTTCCTGCAGTACTGAAAATGAA AACTCTAAAGGAGATTCTTTCCATCAAGACAGCAAGAAAAGGCCTAGAGATGATGGATCG AGTGGAGTGCAAGGAAAAGCTTGTCGGGAAAAGATGCGAAGAGACAGGATGAATGACAGA TTTGTGGAATTGAGTGCTGTTCTTGAGCCCGACAAGCCCCCAAAAACAGATAAAGCATCC ATTCTGCGAGATGCGGCCAGGATCATTAGCCAGCTTCGGGCAGAATCCAGACATTACAAA GAAACAAACAGTCAACTGCATGACACCATCAAGGAGTTGAAGGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FH37 |
Definition |
sp|Q9FH37|ILR3_ARATH Transcription factor ILR3 OS=Arabidopsis thaliana |
Align length |
130 |
Score (bit) |
109.0 |
E-value |
1.0e-23 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NRC9 |
Definition |
tr|A9NRC9|A9NRC9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
158 |
Score (bit) |
135.0 |
E-value |
2.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960058|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_F24, 5' (644 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NRC9|A9NRC9_PICSI Putative uncharacterized protein OS=Picea... 135 2e-30 tr|A9TJS4|A9TJS4_PHYPA Predicted protein OS=Physcomitrella paten... 134 5e-30 tr|A9RJX7|A9RJX7_PHYPA Predicted protein OS=Physcomitrella paten... 123 1e-26 tr|A7P102|A7P102_VITVI Chromosome chr19 scaffold_4, whole genome... 113 9e-24 tr|A9TH67|A9TH67_PHYPA Predicted protein (Fragment) OS=Physcomit... 110 1e-22 tr|B7FHX6|B7FHX6_MEDTR Putative uncharacterized protein OS=Medic... 108 4e-22 tr|B7FHK4|B7FHK4_MEDTR Putative uncharacterized protein OS=Medic... 106 1e-21 tr|Q7XXQ5|Q7XXQ5_ORYSJ BHLH transcription factor OS=Oryza sativa... 106 1e-21 tr|B5AYF5|B5AYF5_TOBAC Basic helix-loop-helix protein OS=Nicotia... 106 1e-21 tr|B8B796|B8B796_ORYSI Putative uncharacterized protein OS=Oryza... 105 2e-21 tr|Q6ZGM4|Q6ZGM4_ORYSJ BHLH transcription factor OS=Oryza sativa... 102 2e-20 tr|A2X043|A2X043_ORYSI Putative uncharacterized protein OS=Oryza... 102 2e-20 tr|B6SST8|B6SST8_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 102 3e-20 tr|A9PJ95|A9PJ95_POPJC Putative uncharacterized protein OS=Popul... 102 3e-20 tr|B4FUY2|B4FUY2_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 100 1e-19 tr|B6TNC2|B6TNC2_MAIZE BHLH transcription factor OS=Zea mays PE=... 98 4e-19 tr|B4FRK4|B4FRK4_MAIZE Putative uncharacterized protein OS=Zea m... 98 4e-19 tr|B4FGY4|B4FGY4_MAIZE Putative uncharacterized protein OS=Zea m... 98 4e-19 tr|A3BKT7|A3BKT7_ORYSJ Putative uncharacterized protein OS=Oryza... 96 2e-18 tr|Q84PA6|Q84PA6_ORYSJ Helix-loop-helix-like protein (Fragment) ... 96 2e-18 tr|Q6ZKI8|Q6ZKI8_ORYSJ Os08g0138500 protein OS=Oryza sativa subs... 96 2e-18 tr|A3BPH0|A3BPH0_ORYSJ Putative uncharacterized protein OS=Oryza... 96 2e-18 tr|A2YR23|A2YR23_ORYSI Putative uncharacterized protein OS=Oryza... 96 2e-18 tr|B6T879|B6T879_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 95 4e-18 tr|B6UCV4|B6UCV4_MAIZE BHLH transcription factor OS=Zea mays PE=... 90 1e-16 tr|B6TTJ8|B6TTJ8_MAIZE BHLH transcription factor OS=Zea mays PE=... 87 7e-16 tr|B8A1W1|B8A1W1_MAIZE Putative uncharacterized protein OS=Zea m... 79 2e-13 tr|B4G0P0|B4G0P0_MAIZE Putative uncharacterized protein OS=Zea m... 78 4e-13 tr|A2Y5C1|A2Y5C1_ORYSI Putative uncharacterized protein OS=Oryza... 77 1e-12 tr|A3B4Q1|A3B4Q1_ORYSJ Putative uncharacterized protein OS=Oryza... 73 2e-11
>tr|A9NRC9|A9NRC9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 238
Score = 135 bits (340), Expect = 2e-30 Identities = 76/158 (48%), Positives = 102/158 (64%), Gaps = 8/158 (5%) Frame = +1
Query: 193 MSSPASG-WISFWEQNLLGD----QQHPDFEWSDPGLEDAAIKGDSFNIQCSSISCSTEN 357 MSSP S W+S++++ LL + Q F W PG+ D +S S E Sbjct: 1 MSSPQSNKWLSYFDEPLLDEVGVGQPANPFFWCGPGINDQP-----------DVSGSVEI 49
Query: 358 ENSKGDSFHQDS---KKRPRDDGSSGVQGKACREKMRRDRMNDRFVELSAVLEPDKPPKT 528 + S D Q+ +KRPR++ S G KACREKMRRDR+NDRF+ELS+VLEP +PPKT Sbjct: 50 DGSNKDIDEQEKLCPRKRPREESSGGPGSKACREKMRRDRLNDRFMELSSVLEPGRPPKT 109
Query: 529 DKASILRDAARIISQLRAESRHYKETNSQLHDTIKELK 642 DKA+IL DAAR++SQLRA+++ KE+N L +TIK+LK Sbjct: 110 DKATILSDAARVMSQLRADAQKLKESNDHLQETIKDLK 147
>tr|A9TJS4|A9TJS4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_195760 PE=4 SV=1 Length = 238
Score = 134 bits (337), Expect = 5e-30 Identities = 77/158 (48%), Positives = 104/158 (65%), Gaps = 8/158 (5%) Frame = +1
Query: 193 MSSPA--SGWISFWEQNLLGDQQ---HPDFEWSDPGLEDAAIKGDSFNIQCSSISCSTEN 357 MSSP+ S W+S+ +NLL +++ F W + I CS +N Sbjct: 2 MSSPSNTSKWMSYLAENLLAEEEVQPSNPFFWC------------TTQQPVEQIDCSIDN 49
Query: 358 ENSKGDSFHQD---SKKRPRDDGSSGVQGKACREKMRRDRMNDRFVELSAVLEPDKPPKT 528 E SKG+S + S+KR R++GSSG KACREKMRRDR+NDRF++LSA LEP +PPKT Sbjct: 50 ECSKGESDVPEKSCSRKRSREEGSSGSGNKACREKMRRDRLNDRFLDLSAALEPGRPPKT 109
Query: 529 DKASILRDAARIISQLRAESRHYKETNSQLHDTIKELK 642 DKA+IL DA RI++QLRAE++ E+N+QL +TIK+LK Sbjct: 110 DKATILSDAVRILTQLRAEAQGLTESNNQLRETIKDLK 147
>tr|A9RJX7|A9RJX7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_67124 PE=4 SV=1 Length = 201
Score = 123 bits (308), Expect = 1e-26 Identities = 63/100 (63%), Positives = 79/100 (79%), Gaps = 3/100 (3%) Frame = +1
Query: 352 ENENSKGDSFHQD---SKKRPRDDGSSGVQGKACREKMRRDRMNDRFVELSAVLEPDKPP 522 +NE SKGDS + S+KR R+D SG KACREKMRRDR+NDRF+ELSA LEP +PP Sbjct: 11 DNECSKGDSDVLEKSCSRKRSREDACSGAGNKACREKMRRDRLNDRFLELSAALEPGRPP 70
Query: 523 KTDKASILRDAARIISQLRAESRHYKETNSQLHDTIKELK 642 KTDKA+IL DA RI++QLRAE++ E+N+QL +TIK+LK Sbjct: 71 KTDKATILSDAVRILTQLRAEAQGLTESNNQLRETIKDLK 110
>tr|A7P102|A7P102_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027432001 PE=4 SV=1 Length = 237
Score = 113 bits (283), Expect = 9e-24 Identities = 66/153 (43%), Positives = 94/153 (61%), Gaps = 3/153 (1%) Frame = +1
Query: 193 MSSPASGWISFWEQNLLGDQQHPDFEWSDPGLEDAAIKGDSFNIQCSSISCSTENENSKG 372 +S A+ W+ +E L+ D PD +++ A + N +S + S E + S G Sbjct: 2 VSPEATNWL--YEYGLIEDIPVPDSNFANTNSGFAWTPVQALN---TSANVSGEIDGSFG 56
Query: 373 DSF---HQDSKKRPRDDGSSGVQGKACREKMRRDRMNDRFVELSAVLEPDKPPKTDKASI 543 DS SKKR R + KACREK+RRDR+ND+F+EL ++LEP +PPKTDK+SI Sbjct: 57 DSDGIKETGSKKRVRSESCGASSSKACREKLRRDRLNDKFMELGSILEPGRPPKTDKSSI 116
Query: 544 LRDAARIISQLRAESRHYKETNSQLHDTIKELK 642 L DA R+++QLR ES+ K++NS L + IKELK Sbjct: 117 LIDAVRMVTQLRGESQKLKDSNSSLQEKIKELK 149
>tr|A9TH67|A9TH67_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_145569 PE=4 SV=1 Length = 172
Score = 110 bits (274), Expect = 1e-22 Identities = 52/81 (64%), Positives = 67/81 (82%) Frame = +1
Query: 400 RPRDDGSSGVQGKACREKMRRDRMNDRFVELSAVLEPDKPPKTDKASILRDAARIISQLR 579 R R++ S G KACREKMRRDR+NDRF+EL A+LEP +PPKTDKA+IL DA RI++QLR Sbjct: 1 RSREEISGGAGNKACREKMRRDRLNDRFLELGAILEPGRPPKTDKATILSDAVRILTQLR 60
Query: 580 AESRHYKETNSQLHDTIKELK 642 AE++ E+N+QL +TIK+LK Sbjct: 61 AEAQGLTESNNQLRETIKDLK 81
>tr|B7FHX6|B7FHX6_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 230
Score = 108 bits (269), Expect = 4e-22 Identities = 57/126 (45%), Positives = 80/126 (63%) Frame = +1
Query: 265 FEWSDPGLEDAAIKGDSFNIQCSSISCSTENENSKGDSFHQDSKKRPRDDGSSGVQGKAC 444 F W P L + I+ D ++ +++ K SKKR R D + KAC Sbjct: 29 FTWPPPHLSNGGIEMDDSSL--------VDSDGIK----EPGSKKRGRSDSCAPSSSKAC 76
Query: 445 REKMRRDRMNDRFVELSAVLEPDKPPKTDKASILRDAARIISQLRAESRHYKETNSQLHD 624 REK+RRDR+ND+FVEL ++LEP +PPKTDKA+IL DA R+++QLR E++ K++NS L + Sbjct: 77 REKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNSGLQE 136
Query: 625 TIKELK 642 IKELK Sbjct: 137 KIKELK 142
>tr|B7FHK4|B7FHK4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 237
Score = 106 bits (265), Expect = 1e-21 Identities = 63/153 (41%), Positives = 89/153 (58%), Gaps = 3/153 (1%) Frame = +1
Query: 193 MSSPASGWISFWEQNLLGDQQHPDFEWSDPGLEDAAIKGDSFNIQCSSISCSTENENSKG 372 +S + WI+ + D PD ++ P FN+ S + S E + S G Sbjct: 2 VSRENTNWIN--DYGFYDDIPVPDSTFALPSSAFTWPTQPPFNL---SSNVSAEVDGSLG 56
Query: 373 DSF---HQDSKKRPRDDGSSGVQGKACREKMRRDRMNDRFVELSAVLEPDKPPKTDKASI 543 DS SKKR R + + KACREK+RRDR+ND+F+EL ++LEP +P KTDKA+I Sbjct: 57 DSDGLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAI 116
Query: 544 LRDAARIISQLRAESRHYKETNSQLHDTIKELK 642 L DA R+++QLR E++ K+ NS L + IKELK Sbjct: 117 LIDAVRMVTQLRGEAQKLKDANSGLQEKIKELK 149
>tr|Q7XXQ5|Q7XXQ5_ORYSJ BHLH transcription factor OS=Oryza sativa subsp. japonica GN=Os07g0543000 PE=2 SV=1 Length = 256
Score = 106 bits (264), Expect = 1e-21 Identities = 58/137 (42%), Positives = 83/137 (60%), Gaps = 11/137 (8%) Frame = +1
Query: 265 FEWSDPGLEDAAIKGDSFNIQ-----------CSSISCSTENENSKGDSFHQDSKKRPRD 411 F W+ P AA++ Q C+ I+ S + E+ K Q + KRPR Sbjct: 33 FYWTTPAPPQAALQPPPPQQQPVAPATAAPNACAEINGSVDCEHGK----EQPTNKRPRS 88
Query: 412 DGSSGVQGKACREKMRRDRMNDRFVELSAVLEPDKPPKTDKASILRDAARIISQLRAESR 591 + + KACREK+RRD++N+RF+EL AVLEP K PK DK+SIL DA R++++LR+E++ Sbjct: 89 ESGTRPSSKACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAIRVMAELRSEAQ 148
Query: 592 HYKETNSQLHDTIKELK 642 KE+N L + IKELK Sbjct: 149 KLKESNESLQEKIKELK 165
>tr|B5AYF5|B5AYF5_TOBAC Basic helix-loop-helix protein OS=Nicotiana tabacum PE=2 SV=1 Length = 233
Score = 106 bits (264), Expect = 1e-21 Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 14/136 (10%) Frame = +1
Query: 277 DPGLEDAAIKGDSFNIQCS-----------SISCSTENENSKGDSFH---QDSKKRPRDD 414 D G E++A+ +F+ S S + S E + S G+S + SKKR R + Sbjct: 12 DYGFEESAVPDSNFSATASGFNWPMQNLNGSRNVSAEVDGSIGESDYPKENGSKKRARVE 71
Query: 415 GSSGVQGKACREKMRRDRMNDRFVELSAVLEPDKPPKTDKASILRDAARIISQLRAESRH 594 + KACREK RRDR+ND+F EL A+LEP +PPKTDK++IL DA R+++QLR E++ Sbjct: 72 SCAPTSSKACREKQRRDRLNDKFTELGALLEPGRPPKTDKSAILVDAVRMVTQLRGEAQK 131
Query: 595 YKETNSQLHDTIKELK 642 K++N L + IKELK Sbjct: 132 LKDSNLNLQEKIKELK 147
>tr|B8B796|B8B796_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_26369 PE=4 SV=1 Length = 256
Score = 105 bits (263), Expect = 2e-21 Identities = 52/105 (49%), Positives = 74/105 (70%) Frame = +1
Query: 328 CSSISCSTENENSKGDSFHQDSKKRPRDDGSSGVQGKACREKMRRDRMNDRFVELSAVLE 507 C+ I+ S + E+ K Q + KRPR + + KACREK+RRD++N+RF+EL AVLE Sbjct: 65 CAEINGSVDCEHGK----EQPTNKRPRSESGTRPSSKACREKVRRDKLNERFLELGAVLE 120
Query: 508 PDKPPKTDKASILRDAARIISQLRAESRHYKETNSQLHDTIKELK 642 P K PK DK+SIL DA R++++LR+E++ KE+N L + IKELK Sbjct: 121 PGKTPKMDKSSILNDAIRVMAELRSEAQKLKESNESLQEKIKELK 165
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